Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20maxima_20[genbank_20GCA_5F002006925.1_202017-03-07]
1,504 sequences; 345,757,338 total letters
Query= NC_004117.1
Length=158482
Score E
Sequences producing significant alignments: (Bits) Value
seq6 111 2e-19
seq2 87.8 2e-12
>seq6
Length=23636167
Score = 111 bits (122), Expect = 2e-19
Identities = 165/234 (71%), Gaps = 0/234 (0%)
Strand=Plus/Minus
Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016
|||||| || | ||| | || | ||||| || ||||| ||||| || |||||||||
Sbjct 5506611 GCCTCCACGGAGACGAAGCACAAGATGAAGCGTCGATTCCTTTTGGATATTGTAATCGGC 5506552
Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076
|| |||| |||||||| ||||| ||||| |||||||||| ||||| || |||||
Sbjct 5506551 CAAGGTGCGGCCATCTTCGAGCTGTTTTCCAGCGAAGATCAGACGCTGCTGGTCCGGAGG 5506492
Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136
|| ||||| ||||| || || || | | || | ||||| | | || ||
Sbjct 5506491 GATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCGAC 5506432
Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCTTA 143190
||| | ||| | ||||||||||| | ||||| ||||| || ||||| | |||
Sbjct 5506431 TTCGAGAGTAATGGTCTTGCCGGTTAGGGTTTTCACGAAGATCTGCATCGTTTA 5506378
Score = 98.7 bits (108), Expect = 1e-15
Identities = 159/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016
|||||| || | ||| | || | ||||| || || || || || ||||||||||||
Sbjct 4325956 GCCTCCGCGGAGACGAAGGACAAGATGAAGGGTTGACTCCTTCTGGATGTTGTAATCGGC 4325897
Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076
|| |||| ||| ||||| || || |||||| |||| || | ||||| || || ||
Sbjct 4325896 CAAGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCAAAGATAAGCCTCTGCTGGTCCGGCGG 4325837
Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136
|| || || ||||| || || |||| | || | ||||||| | || ||
Sbjct 4325836 AATTCCCTCCTTGTCTTGGATCTTGGCCTTTACGTTGTCGATGGTGTCCGAGCTCTCGAC 4325777
Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185
||| | ||| | || ||||||||||| ||||| ||||| || ||||||
Sbjct 4325776 TTCGAGAGTAATAGTTTTGCCGGTCAAGGTTTTCACGAAGATCTGCATA 4325728
Score = 96.9 bits (106), Expect = 4e-15
Identities = 140/198 (71%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047
|| || || || || |||||||||||| || |||| ||||||||||| || ||
Sbjct 4416550 GTTGACTCCTTCTGGATGTTGTAATCGGCCAAGGTGCGGCCATCTTCGAGTTGCTTTCCG 4416491
Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107
||| |||||||||| |||||||| ||||| || || || ||||| || || ||
Sbjct 4416490 GCAAAGATCAGACGCTGCTGATCCGGAGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTC 4416431
Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167
| | || | ||||| | | || ||||| | ||| | ||| |||||||| | |||
Sbjct 4416430 ACGTTGTCGATGGTGTCAGAGCTCTCCACTTCGAGAGTGATCGTTTTGCCGGTTAGGGTT 4416371
Query 143168 TTTACGAATATTTGCATA 143185
|| ||||| || ||||||
Sbjct 4416370 TTCACGAAGATCTGCATA 4416353
Score = 96.9 bits (106), Expect = 4e-15
Identities = 151/216 (70%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 142969 ACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGA 143028
|||||| || | ||||| || || || || || ||||||||||| | || ||
Sbjct 4424449 ACGCAACACCAGATGAAGAGTCGACTCCTTCTGAATGTTGTAATCCGCAAGCGTCCTTCC 4424390
Query 143029 GTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 143088
|| || || || || |||||| ||||||| || |||||||| || ||||| ||||| ||
Sbjct 4424389 ATCCTCCAGCTGCTTCCCAGCAAAGATCAGGCGCTGCTGATCAGGTGGTATCCCTTCCTT 4424330
Query 143089 GTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCAC 143148
||| |||||| || | | || | ||||| | | || ||||| | ||| |
Sbjct 4424329 GTCCTGGATTTTTGCCTTGACGTTGTCAATGGTGTCAGAGCTCTCGACTTCCAGAGTGAT 4424270
Query 143149 CGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
|||||| || |||| ||||| ||||| || |||||
Sbjct 4424269 CGTCTTTCCCGTCAGGGTTTTGACGAAGATCTGCAT 4424234
Score = 95.1 bits (104), Expect = 1e-14
Identities = 139/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047
|| ||||||||||| |||||||||||| || || | |||||||||||| || ||
Sbjct 4416778 GTGGATTCTTTTTGGATGTTGTAATCGGCCAAGGTCCGGCCGTCTTCGAGTTGCTTTCCG 4416719
Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107
|| ||||||| | ||||| |||||||| || || || ||||| || || ||
Sbjct 4416718 GCGAAGATCAGCCTCTGCTGGTCGGGAGGGATTCCCTCCTTGTCTTGGATCTTGGCCTTC 4416659
Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167
| | || | |||||| | | || || || | || | |||||| ||||||| |||
Sbjct 4416658 ACGTTATCGATCGTGTCGGAGCTCTCGACCTCGAGGGTAATCGTCTTCCCGGTCAGGGTT 4416599
Query 143168 TTTACGAATATTTGCAT 143184
|| ||||| || |||||
Sbjct 4416598 TTGACGAAGATCTGCAT 4416582
Score = 95.1 bits (104), Expect = 1e-14
Identities = 139/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047
|| ||||||||||| |||||||||||| || |||| |||||||||||| || ||
Sbjct 4424202 GTGGATTCTTTTTGAATGTTGTAATCGGCCAAAGTGCGGCCGTCTTCGAGTTGCTTCCCG 4424143
Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107
||| |||| ||||| ||||| || || || || || || ||||| || || ||
Sbjct 4424142 GCAAAGATGAGACGCTGCTGGTCCGGCGGAATTCCCTCCTTGTCCTGGATCTTGGCCTTG 4424083
Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167
| | || | ||||| | | || ||||| | || | ||||||||||| | |||
Sbjct 4424082 ACGTTGTCGATTGTGTCGGAGCTCTCCACTTCGAGGGTGATTGTCTTGCCGGTGAGGGTT 4424023
Query 143168 TTTACGAATATTTGCAT 143184
|| || ||||| |||||
Sbjct 4424022 TTCACAAATATCTGCAT 4424006
Score = 91.5 bits (100), Expect = 1e-13
Identities = 139/198 (70%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047
|| || || || || |||||||||||| || |||| ||||||||||| || ||
Sbjct 4366013 GTTGACTCCTTCTGGATGTTGTAATCGGCCAAGGTGCGGCCATCTTCGAGTTGCTTTCCG 4365954
Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107
|| |||||||||| |||||||| ||||| || || || ||||| || || ||
Sbjct 4365953 GCGAAGATCAGACGCTGCTGATCCGGAGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTG 4365894
Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167
| | || | ||||| | | || ||||| | ||| | ||| |||||||| | |||
Sbjct 4365893 ACGTTGTCGATTGTGTCAGAGCTCTCCACTTCGAGAGTGATCGTTTTGCCGGTTAGGGTT 4365834
Query 143168 TTTACGAATATTTGCATA 143185
|| ||||| || ||||||
Sbjct 4365833 TTCACGAAGATCTGCATA 4365816
Score = 86.0 bits (94), Expect = 6e-12
Identities = 137/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047
|| ||||||||||| |||||||||||| || |||| |||||| | ||| || ||
Sbjct 4366241 GTGGATTCTTTTTGGATGTTGTAATCGGCCAAGGTGCGGCCGTCTTCCAATTGCTTTCCG 4366182
Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107
|| ||||||| | ||||| |||||||| || || || ||||| || || ||
Sbjct 4366181 GCGAAGATCAGCCTCTGCTGGTCGGGAGGGATTCCCTCCTTGTCTTGGATCTTGGCCTTC 4366122
Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167
| | || | |||||| | | || || || | || | |||||| ||||| | |||
Sbjct 4366121 ACGTTATCGATCGTGTCGGAGCTCTCGACCTCGAGGGTAATCGTCTTCCCGGTTAGGGTT 4366062
Query 143168 TTTACGAATATTTGCAT 143184
|| ||||| || |||||
Sbjct 4366061 TTGACGAAGATCTGCAT 4366045
Score = 82.4 bits (90), Expect = 8e-11
Identities = 155/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016
|||||| || | ||| | || | ||| | || || || || |||||||||||||||
Sbjct 4326184 GCCTCCGCGGAGACGAAGGACAAGATGGAGGGTTGACTCCTTCTGTATGTTGTAATCGGC 4326125
Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076
|| |||| ||| ||||| || || ||||| |||| || | ||||| || || ||
Sbjct 4326124 CAAGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATAAGCCTCTGCTGGTCCGGGGG 4326065
Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136
||| || || ||||| ||| || || | | || | ||||| | | || ||
Sbjct 4326064 TATTCCCTCCTTGTCTTGAATCTTCGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCGAC 4326005
Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
||| | ||| | || ||||| |||| ||||| ||||| || |||||
Sbjct 4326004 TTCGAGAGTAATAGTTTTGCCAGTCAGGGTTTTCACGAAGATCTGCAT 4325957
>seq2
Length=53008150
Score = 87.8 bits (96), Expect = 2e-12
Identities = 147/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGTCTTC 143034
|| ||||||| || ||||| || || |||||||| || | ||||| || | || ||
Sbjct 27084291 ACCAAATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCTGCAAGTGTGCGTCCA-TCCTC 27084349
Query 143035 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 143094
||||||||||| ||| |||| || | |||||| || || || || ||||| |||||
Sbjct 27084350 TAGTTGTTTACCGGCAAAGATGAGCCTTTGCTGGTCTGGTGGGATCCCTTCCTTGTCCTG 27084409
Query 143095 AATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTT 143154
|||||| ||| | | || | ||||| | | || ||||| | || | || ||
Sbjct 27084410 AATTTTGGCTTTGACATTGTCAATGGTGTCGGAGCTCTCAACTTCCAAGGTGATAGTTTT 27084469
Query 143155 GCCGGTCAATGTTTTTACGAATATTTGCAT 143184
|| |||| ||||| || ||||| |||||
Sbjct 27084470 ACCAGTCAGGGTTTTCACAAATATCTGCAT 27084499
Score = 86.0 bits (94), Expect = 6e-12
Identities = 147/211 (70%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGTCTTC 143034
|| ||||||| || ||||| || || |||||||| || | ||||| || | || ||
Sbjct 27127554 ACCAAATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCTGCAAGTGTGCGTCCA-TCCTC 27127612
Query 143035 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 143094
||||||||||| ||| |||| || | |||||| || || || || ||||| || ||
Sbjct 27127613 TAGTTGTTTACCGGCAAAGATGAGCCTTTGCTGGTCTGGTGGGATCCCTTCCTTATCCTG 27127672
Query 143095 AATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTT 143154
|||||| ||| | | || | ||||| | | ||| || || | || | |||||
Sbjct 27127673 AATTTTGGCTTTGACATTGTCAATGGTGTCGGAGCTTTCCACCTCCAGGGTGATAGTCTT 27127732
Query 143155 GCCGGTCAATGTTTTTACGAATATTTGCATA 143185
|| || | |||||||| || || ||||||
Sbjct 27127733 TCCAGTGAGGGTTTTTACAAAGATCTGCATA 27127763
Score = 82.4 bits (90), Expect = 8e-11
Identities = 111/155 (72%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089
|| ||||| |||||||||||| |||| || | |||||||| || || || ||||| |||
Sbjct 27128064 TCCTCGAGCTGTTTACCAGCAAAGATAAGCCTCTGCTGATCTGGTGGGATCCCTTCCTTG 27128123
Query 143090 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACC 143149
|| || || ||||| | || | ||||| | | ||| || |||| || |
Sbjct 27128124 TCCTGGATCTTGGCTTTTACATTATCAATGGTGTCGGAGCTTTCAACCTCAAGGGTTATT 27128183
Query 143150 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
||||||||||| | ||||| || || ||||||||
Sbjct 27128184 GTCTTGCCGGTGAGAGTTTTCACAAAGATTTGCAT 27128218
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 507004868129280
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