Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20maxima_20[genbank_20GCA_5F002006925.1_202017-03-07] 1,504 sequences; 345,757,338 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq7 125 1e-23 >seq7 Length=22269817 Score = 125 bits (138), Expect = 1e-23 Identities = 376/564 (67%), Gaps = 26/564 (5%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 ||||||||||||||||| || || | || || |||||||| | || || || ||||| Sbjct 8165705 ATTTGGGAAATGTACAAGAAAGCCGAAGCGTCGTTTTGGACCGCTGAGGAAGTTGATCTT 8165646 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAG----TTTAT 125134 || | || || | | |||||| | | | || | |||| ||||| || | Sbjct 8165645 TCGCAAGATCTCCGCCACTGGGAGGCCC---TAACCG---CTGA-CGAGAAGCACTTCGT 8165593 Query 125135 ATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGAC 125194 ||||| | | |||||||| || | |||||| || |||||| ||| || || Sbjct 8165592 CACGCACGTGCTCGCCTTCTTCGCAGCCTCCGACGGCATCGTCCTCGAGAACCTCGCCGG 8165533 Query 125195 ACGATTCTCTCAAGAGTTGACCAT-TC-CAGAGGTGTCGTGCTTT-TACGGATTCCAAAT 125251 | | ||| ||| | ||| || | |||| | ||||| || ||||| |||||||| Sbjct 8165532 AAGGTTCATGACGGAGGT--CCAGGTCGCCGAGGCG-CGTGCCTTCTACGGCTTCCAAAT 8165476 Query 125252 CATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGA 125311 | || |||||| | ||||| ||||||||||| || | || | ||||| || Sbjct 8165475 CGCCATCGAGAACATCCACTCCGAAATGTACTCGCTGCTTCTAGAAACTTACATCAAAGA 8165416 Query 125312 -TCCGCAACGTAAACACATG-CTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAA 125369 |||| ||| ||| | | |||||| |||| ||||| ||||| || | | || ||| Sbjct 8165415 CTCCG--ACGAAAAGAACCGTCTCTTTCACGCCATCGAGACGGTTCCCTGCGT-CGCAAA 8165359 Query 125370 -AAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACT 125428 || || |||| | | |||||||| | | || ||| ||| || ||| | Sbjct 8165358 GAAAGCCACGTGGGCGTTAAATTGGATCGACGGCTCGGAGACTTT---CGCGGAGAGATT 8165302 Query 125429 GGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTG 125488 | || || || ||| ||||| || ||||| || || |||||| || || ||||| Sbjct 8165301 AATCGCGTTTGCTTGCGTGGAGGGGATTTTCTTCTCAGGGAGTTTTTGCGCGATATTTTG 8165242 Query 125489 GCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGA 125548 |||||| |||||||| | ||||| ||| | || | |||||||| || |||||||| Sbjct 8165241 GCTCAAAAAGCGCGGGTTAATGCCGGGATTAACATTCTCAAACGAGTTGATCTCTCGAGA 8165182 Query 125549 CGAGGGCCTACACTGTGACTTTGC 125572 ||||| || ||||| || || || Sbjct 8165181 TGAGGGTCTCCACTGCGATTTCGC 8165158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741045268087040