Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20maxima_20[genbank_20GCA_5F002006925.1_202017-03-07] 1,504 sequences; 345,757,338 total letters Query= NC_004745.1 Length=30728 Score E Sequences producing significant alignments: (Bits) Value seq1504 354 2e-93 >seq1504 Length=2444 Score = 354 bits (392), Expect = 2e-93 Identities = 929/1382 (67%), Gaps = 64/1382 (5%) Strand=Plus/Minus Query 16481 CATGGCGTGCAGGTGCTGGAGA--TTAACGACGGCACCCGCGTCATTTCCACCGTATCCA 16538 || ||||||| | || || ||| ||||||||||||||||| || | || || || Sbjct 2377 CACGGCGTGC-GCTGTTGTAGAAGTTAACGACGGCACCCGCTCTATCACGACGGTGAGCA 2319 Query 16539 CTGCCATTGTCGGCATGGTCTGCACGGCCAGCGATGCGGATGCGGAAACCTTCCCTCTCA 16598 | || ||||| |||||||| ||||| | | ||||| ||||| | ||||| |||| Sbjct 2318 CGGCGATTGTGGGCATGGTGTGCACCGGCGATGATGCCGATGCCTCCATGTTCCCGCTCA 2259 Query 16599 ATAAACC-GGTGCTGATTACCAATGTGCAGAGCGCAATTGCAAAGGCCGGTAAAAAAGGC 16657 |||| || ||| ||| ||||| |||| | || ||| | | || || || | || Sbjct 2258 ATAAGCCTGGTACTGCTTACCGATGTACTGACCGCCAGCGGTAAAGCGGGCGAGTCCGGT 2199 Query 16658 ACGCTGGCGGCGTCGTTACAGGCCATCGCTGACCAGTCAAAA-CCGGTCACCGTTGTTGT 16716 |||||||| || | | || ||||| |||||| ||||| || |||||||| || || Sbjct 2198 ACGCTGGCCCGCTCACTGGACGCGATCGCAGACCAGGCAAAAACCCGTCACCGTAGTGGT 2139 Query 16717 GCGCGTGGAAGACGGCACCGGCGACGACGAGGAAACGAAACTCGCGCAGACTGTTTCCAA 16776 |||||| | | ||| ||||| || ||| | || || || Sbjct 2138 GCGCGTTGCCCAGGGC---------------GAAACCGAA---GCGGAAACCACCTCAAA 2097 Query 16777 TATTATCGGCACC---ACCGACGAAAACGGTCAGTACACCGGACTGAAAGCCCTGATGGG 16833 |||||||||| | || | ||| |||| || | ||||| |||| || || | Sbjct 2096 TATTATCGGCGGCGTGACTGCCGA---CGGTAAGAAAACCGGCATGAAGGCGCTACTTTC 2040 Query 16834 GGCTGAGTCGGTTACCGGCGTTAAACCGCGCATTCT-CGGCGTACCGGGACTGGACACCA 16892 || ||||| | ||||| |||||||||||||| |||||| ||||| | || || Sbjct 2039 CGCGCAGTCGCAG-CTGGCGTGAAACCGCGCATTCTTCGGCGTGCCGGGGCATGATACGC 1981 Query 16893 AAGAGGTCGCCGTCGCACTGGCATCGGTATGCCAGGAACTGAATGCCTTCGGGTATATCA 16952 | | || || | ||| | || || || ||| ||||| | |||||| Sbjct 1980 AGGCCGTATCCACTGAGCTGTGAGCGTGGCGC-AGAGCCTGCGGGCCTTTGCGTATATGT 1922 Query 16953 GCGCATGGGGTTGTAAAACCATTTCCGAGGTGAAAGCCTACCGCCAGAATTTCAGCCAGC 17012 || | || ||||||||| | | | || | |||||| | || |||||||||| Sbjct 1921 CAGCTTACGGCTGTAAAACCGTGGCAAGAGCGATCACTTACCGCGACAACTTCAGCCAGC 1862 Query 17013 GTGAGCTGATGGTTATCTGGCCGGATTTCCTCGCATGGGATACGGTTAC-CAGTACCACC 17071 |||| ||| |||||||||| || ||| | | || ||||| ||| | Sbjct 1861 GTGAAGGAATGATTATCTGGCCTGACTTCATAAACTTTGACACGGTGCTGCAGGCGGAT- 1803 Query 17072 GCCACCGCGTATGCCACCGCTCGTGCGCTGGGTCTGCGCGCTAAAA-TCGACCAGGAGCA 17130 || ||||| || || || || || || || || ||||||||||||| ||||| || | Sbjct 1802 GCGACCGC-TACGCTAC-GCCCGCGCCCTTGG-CTGCGCGCTAAAAATCGACGAGCAAAC 1746 Query 17131 GGGCTGGCATAAAACGCTGTCCAACGTCGGGGTGAACGGTGTTACCGGCATCAGTGCATC 17190 |||||||| ||||| ||||| ||||| || || ||||| || |||||| | ||| Sbjct 1745 CGGCTGGCACAAAACCCTGTCTAACGT-GGCGTCAACGGCGTAACCGGCTTGTCTGCGGA 1687 Query 17191 CGTCTTCTGGGATTTGCAGAAGCCAGGCACTGATGCTGACCTGCTGAACGAGGCAGGCGT 17250 || ||||||||| ||||| | || | |||||||| | ||||||||| || | ||| Sbjct 1686 TGTGTTCTGGGATCTGCAGGACCCGGCAACTGATGCCGGACTGCTGAACCAGAACGACGT 1627 Query 17251 CACAACGCTGGTTCGCCGCGACGGTTTTCGTTTCTGGGGTAACCG-TACCTGCTCTGATG 17309 ||| || || | | || ||||| || ||||||||| ||| | |||| ||||| Sbjct 1626 CACCACCTTGATCAGGAAGGATGGTTTCCGCTTCTGGGGTTCCCGCTGCCTGAG-TGATG 1568 Query 17310 AC-CCGCTGTTCCTCTTTGAAAGCTACACACGCACCGCGCAGGTACTGGCCGACACGATG 17368 | |||||||||| ||||||| |||||| |||||||||||||||||||| ||||| ||| Sbjct 1567 AATCCGCTGTTCCAGTTTGAAAACTACACCCGCACCGCGCAGGTACTGGCTGACACCATG 1508 Query 17369 GCTGAGGCGCACATGTGGGCTATTGATAAGCCCATCACCGCAACGCTGATTCGCGACATC 17428 || |||| || |||||||| | |||| ||| | | | | ||||| ||||| || Sbjct 1507 GCAGAGGGCCATATGTGGGCGGTGGATATGCCGCTTAACCCGTCGCTGGCCCGCGATATT 1448 Query 17429 ATTGACGGCATCAATGCCAAATTCCGTGAACTGAAAAACAACGGTTATATCGTGGATGGC 17488 || || || ||| |||||| | || ||| || | | || || || | | || Sbjct 1447 ATCGAAGGTATCCGCGCCAAAATGCGCAGCCTGGTAATC-AGGGCTACCTCATCGGCGGT 1389 Query 17489 ACATGCTGG-TTCAGCGAAGAATCCAACGATGCGGA-AACCCTCAAGGCCGGAAAACTGT 17546 |||||| || | || | ||||| || | |||| || ||||| ||||| | Sbjct 1388 GATTGCTGGATTGATGACAGCGT-TAACGACAAAGACAGCCCTGAAAGCCGGGAAACTCT 1330 Query 17547 ATATCGACTACGACTATACCCCGGTGCCTCCTCTCGAAAACCTGACCCTGCGCCAGCGTA 17606 ||||||||||||||||| || ||||| || || |||||||||| ||||||||||| | Sbjct 1329 GGATCGACTACGACTATACGCCAGTGCCGCCGCTGGAAAACCTGATGCTGCGCCAGCGCA 1270 Query 17607 TTACTTCCAGATACCTGGCAAGTCTGGTCACTTCGGTTAACAGCAATTAAGGAGCCTGAC 17666 | ||| | | ||||||| | | ||| || ||| ||| ||||| | ||| Sbjct 1269 TCACTGACCGTTACCTGGTGGATTTCACCAC-CCGCGTAAGCGCA--TAAGGGG---GAC 1216 Query 17667 CGATGGCAATGCCGCGCAAA-CTCAAGTTAATGAACGTCTTTCTGAACGGCTACAGCTAT 17725 | ||||| | || |||||| || || ||||| |||||| |||| | | | | Sbjct 1215 CCATGGCCTTACCACGCAAAGCTAAAACACCTGAACATCTTTC--AACGCCGGTAACACT 1158 Query 17726 CA-GGGCGTTGCAAAGTCCGTCACGCTGCCAAAACTGACCCGTAAGCTCGAAAACTATCG 17784 | |||| |||| | |||||||| ||||| ||| | |||| ||||| || |||||||| Sbjct 1157 GATGGGCATTGCTGAATCCGTCACCCTGCCGAAATTTTCCCGCAAGCTTGAGAACTATCG 1098 Query 17785 CGGTGCGGGGATGAACGG--CAGCGCACCGGTA--GACCTCGGCCTTGATGATGATGCTC 17840 ||| |||| ||| ||| ||| ||||| || || || || ||||||| || | Sbjct 1097 CGGGGCGGCTATGCCCGGTTCAG----TCGGTATCGATCTGGGGCTGGATGATGGCGCAC 1042 Query 17841 TG 17842 || Sbjct 1041 TG 1040 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 98206246005120