Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20maxima_20[genbank_20GCA_5F002006925.1_202017-03-07] 1,504 sequences; 345,757,338 total letters Query= NC_005056.1 Length=32684 Score E Sequences producing significant alignments: (Bits) Value seq1504 417 2e-112 >seq1504 Length=2444 Score = 417 bits (462), Expect = 2e-112 Identities = 1168/1739 (67%), Gaps = 99/1739 (6%) Strand=Plus/Minus Query 15851 CACGGCGTGCAGGTGCTGGAGA--TTAACGAGGGCACCCGCGTCATTTCCACCGTATCCA 15908 |||||||||| | || || ||| ||||||| ||||||||| || | || || || Sbjct 2377 CACGGCGTGC-GCTGTTGTAGAAGTTAACGACGGCACCCGCTCTATCACGACGGTGAGCA 2319 Query 15909 CCGCCATTGTTGGCATGGTCTGCACGGCCAGCGATGCGGATGCGGAAATCTTCCCCCTCA 15968 | || ||||| |||||||| ||||| | | ||||| ||||| || ||||| |||| Sbjct 2318 CGGCGATTGTGGGCATGGTGTGCACCGGCGATGATGCCGATGCCTCCATGTTCCCGCTCA 2259 Query 15969 ATAAACC-GGTACTGATTACCAATGTGCAGAGTGCAATTGCAAAGGCCGGTAAAAAAGGC 16027 |||| || ||||||| ||||| |||| | || || | | || || || | || Sbjct 2258 ATAAGCCTGGTACTGCTTACCGATGTACTGACCGCCAGCGGTAAAGCGGGCGAGTCCGGT 2199 Query 16028 ACGCTGGCGGCGTCGTTGCAGGCTATCGCCGACCAGTCAAAA-CCGGTCACCGTTGTCGT 16086 |||||||| || || | || ||||| |||||| ||||| || |||||||| || || Sbjct 2198 ACGCTGGCCCGCTCACTGGACGCGATCGCAGACCAGGCAAAAACCCGTCACCGTAGTGGT 2139 Query 16087 ACGTGTGGAAGACGGCACCGGCGAAGACGAAGAAACGAAACTCGCGCAGACCGTTTCCAA 16146 || || | | ||| ||||| || ||| | ||| || || Sbjct 2138 GCGCGTTGCCCAGGGC---------------GAAACCGAA---GCGGAAACCACCTCAAA 2097 Query 16147 TATCATCGGCACC---ACTGACGAAAACGGTCAGTACACCGGACTGAAGGCCCTGCTGGC 16203 ||| |||||| | |||| ||| |||| || | ||||| ||||||| || || | Sbjct 2096 TATTATCGGCGGCGTGACTGCCGA---CGGTAAGAAAACCGGCATGAAGGCGCTACTTTC 2040 Query 16204 GGCAGAGTCGGTAACCGGTGTTAAACCGCGTATTCT-CGGCGTGCCGGGACTGGACACCA 16262 || ||||| | | || || |||||||| ||||| |||||||||||| | || || Sbjct 2039 CGCGCAGTCGC-AGCTGGCGTGAAACCGCGCATTCTTCGGCGTGCCGGGGCATGATACGC 1981 Query 16263 AAGAGGTGGCTGTTGCACTGGCATCAGTCTGTCAGAAGCTGCGCGCTTTCGGGTATATCA 16322 | | || | || ||| | | || |||| ||||| || || | |||||| Sbjct 1980 AGGCCGTATCCACTGAGCTGTGAGC-GTGGCGCAGAGCCTGCGGGCCTTTGCGTATATGT 1922 Query 16323 GCGCATGGGGCTGTAAAACCATTTCCGAGGTGAAAGCCTACCGCCAGAATTTCAGCCAGC 16382 || | |||||||||||| | | | || | |||||| | || |||||||||| Sbjct 1921 CAGCTTACGGCTGTAAAACCGTGGCAAGAGCGATCACTTACCGCGACAACTTCAGCCAGC 1862 Query 16383 GTGAGCTGATGGTCATCTGGCCGGATTTCCTCGCATGGGATACGGT-CGCCAGTACCACC 16441 |||| ||| | |||||||| || ||| | | || ||||| | ||| | Sbjct 1861 GTGAAGGAATGATTATCTGGCCTGACTTCATAAACTTTGACACGGTGCTGCAGGCGGAT- 1803 Query 16442 GCCACCGCGTATGCCACCGCCCGTGCGCTGGGTCTGCGCGCTAAAA-TCGACCAGGAGCA 16500 || ||||| || || || ||||| || || || ||||||||||||| ||||| || | Sbjct 1802 GCGACCGC-TACGCTAC-GCCCGCGCCCTTGG-CTGCGCGCTAAAAATCGACGAGCAAAC 1746 Query 16501 GGGCTGGCATAAAACGCTGTCCAACGTCGGGGTGAACGGTGTTACCGGCATCAGCGCGTC 16560 |||||||| ||||| ||||| ||||| || || ||||| || |||||| | ||| Sbjct 1745 CGGCTGGCACAAAACCCTGTCTAACGT-GGCGTCAACGGCGTAACCGGCTTGTCTGCGGA 1687 Query 16561 CGTATTCTGGGATTTGCAGGAGTCCGGCACC-GATGCTGACCTGCTTAACGAGTCAGGCG 16619 || ||||||||| ||||||| |||||| | ||||| | ||||| ||| || | || Sbjct 1686 TGTGTTCTGGGATCTGCAGGAC-CCGGCAACTGATGCCGGACTGCTGAACCAGAACGACG 1628 Query 16620 TCACAACGCTGATTCGCCGTGACGGTTTCCGCTTCTGGGGTAACCG-TACCTGCTCTGAT 16678 |||| || |||| | || |||||||||||||||||| ||| | |||| |||| Sbjct 1627 TCACCACCTTGATCAGGAAGGATGGTTTCCGCTTCTGGGGTTCCCGCTGCCTGAG-TGAT 1569 Query 16679 GA-TCCGCTGTTCCTCTTTGAAAACTACACCCGCACCGCGCAGGTGCTGGCCGACACGAT 16737 || ||||||||||| ||||||||||||||||||||||||||||| ||||| ||||| || Sbjct 1568 GAATCCGCTGTTCCAGTTTGAAAACTACACCCGCACCGCGCAGGTACTGGCTGACACCAT 1509 Query 16738 GGCTGAGGCGCACATGTGGGCGGTGGACAAGCCCATCACCGCAACGCTGATTCGCGACAT 16797 ||| |||| || |||||||||||||| | ||| | | | | ||||| ||||| || Sbjct 1508 GGCAGAGGGCCATATGTGGGCGGTGGATATGCCGCTTAACCCGTCGCTGGCCCGCGATAT 1449 Query 16798 CGTTGACGGCATCAATGCCAAATTCCGTGAGCTGAAAACAAACGGCTATATCGT-GGATG 16856 | || || ||| |||||| | || ||| || | ||||| || | || | Sbjct 1448 TATCGAAGGTATCCGCGCCAAAATGCGCAGCCTGGTAA-TCAGGGCTACCTCATCGGCGG 1390 Query 16857 CGACCTGCTGG-TTCAGCGAAGAGTCCAACGATGCGGA-AACCCTCAAGGCCGGAAAACT 16914 || |||||| || | || || ||||| || | |||| || ||||| ||||| Sbjct 1389 TGA-TTGCTGGATTGATGACAGCGT-TAACGACAAAGACAGCCCTGAAAGCCGGGAAACT 1332 Query 16915 GTATATCGACTACGACTATACCCCGGTGCCTCCTCTTGAAAATCTGACCCTGCGCCAGCG 16974 | ||||||||||||||||| || ||||| || || ||||| |||| ||||||||||| Sbjct 1331 CTGGATCGACTACGACTATACGCCAGTGCCGCCGCTGGAAAACCTGATGCTGCGCCAGCG 1272 Query 16975 CATTACCGATAAATACCTGGCAAATCTGGTCACTTCGGTTAACAGCAATTAAGGAGCCTG 17034 ||| || || ||||||| || | ||| || ||| ||| ||||| | | Sbjct 1271 CATCACTGACCGTTACCTGGTGGATTTCACCAC-CCGCGTAAGCGCA--TAAGGGG---G 1218 Query 17035 ACCGATGGCAATGCCGCGCAAA-CTCAAGTTAATGAACGTCTTTCTGAACGGCTACAGCT 17093 ||| ||||| | || |||||| || || ||||| |||||| |||| | | | Sbjct 1217 ACCCATGGCCTTACCACGCAAAGCTAAAACACCTGAACATCTTTC--AACGCCGGTAACA 1160 Query 17094 ATCA-GGGCGTTGCAAAGTCCGTCACGCTGCCAAAACTGACCCGTAAGCTCGAAAACTAT 17152 | | |||| |||| | |||||||| ||||| ||| | |||| ||||| || |||||| Sbjct 1159 CTGATGGGCATTGCTGAATCCGTCACCCTGCCGAAATTTTCCCGCAAGCTTGAGAACTAT 1100 Query 17153 CGCGGTGCGGGGATGAACGG--CAGCGCACCGGTA--GACCTCGGCCTTGATGACGATGC 17208 ||||| |||| ||| ||| ||| ||||| || || || || ||||| | || Sbjct 1099 CGCGGGGCGGCTATGCCCGGTTCAG----TCGGTATCGATCTGGGGCTGGATGATGGCGC 1044 Query 17209 GCTGTCAATGGAGTGGTCGCTCGGTGGCTTCCCGGATTCAGTTATCTGGGAGCTTTACGC 17268 ||| || ||| | | |||| || | | || || | ||| |||| | Sbjct 1043 ACTG-GAACGGAAATGACCATCGGCGG---CACTGAGGCACT--GCTG-----TTTAAAC 995 Query 17269 ----CGCAA--CCGGTGTGGATGCTGTGCCGATTCGTTTTGCAGGCTCTTACCAGCGTGA 17322 |||| || ||||| | |||| ||| || || | |||||| |||||| || Sbjct 994 AGATGGCAAGGCCACGGTGGACGGCGTGCAGATGCGCTTCACCGGCTCTATCCAGCGCGA 935 Query 17323 CGATACCGGCGAAACGGT----GGCCGTCGAAGTGGTCAT-GCGTGGACGTCAGAAAGAA 17377 || |||||||| ||| |||||| || |||| | || ||||| || ||||| Sbjct 934 TGACACCGGCGA---GGTTGCAGGCCGTTGAGCTGGTTGTACCGCGGACGCCACAAAGAG 878 Query 17378 ATCGACACCGGCGAG-GGCAAACAGG-GAGAAGACACCGAGTCGAAAATCTCCGTGGTCT 17435 | || |||||||| || |||| || |||| | | | | ||| || | || Sbjct 877 GTGGATTCCGGCGAGTGGAAAACCGGCGAGAGCAATACCA--CCAAAGTCAGCAGCGTTA 820 Query 17436 GCACCTATTTCCGGCTGACGATGGACGGTAAGGAGCTGGTCGAAATCGA-CACCATCAAC 17494 || |||| |||||| || |||| ||| |||| ||| |||| |||||| Sbjct 819 ACAGCTATGCGAAGCTGACCATTAACGG-GAGGTGCTGTACGAGGTCGATGTGAATCAAC 761 Query 17495 ATGATTGAGAAGGTGAACGGCGTCGACCGGCTGGAGCAACACCGCCGCAATATCGGCCT 17553 |||||||| | || | ||||| |||| | |||| |||||||| | |||||||| Sbjct 760 ATGATTGAAATTGTTGATGGCGTTGACCTGATGGAAGAACACCGCAACGCCATCGGCCT 702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 104465334215808