Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20maxima_20[genbank_20GCA_5F002006925.1_202017-03-07] 1,504 sequences; 345,757,338 total letters Query= NC_005340.1 Length=30636 Score E Sequences producing significant alignments: (Bits) Value seq1504 408 8e-110 >seq1504 Length=2444 Score = 408 bits (452), Expect = 8e-110 Identities = 912/1324 (69%), Gaps = 75/1324 (6%) Strand=Plus/Minus Query 14923 GAAATTAATGACGGTACGCGTGTTATTTCCACAGT-AGCGACTGCGGTCGTCGGCATGGT 14981 ||| |||| ||||| || || ||| | || || ||| || ||| | || |||||||| Sbjct 2358 GAAGTTAACGACGGCACCCGCTCTATCACGACGGTGAGC-ACGGCGATTGTGGGCATGGT 2300 Query 14982 TTGTACAGCCAGCGATGCAGATGCCACGCTATTTCCCCTCAATGAACC-GGTACTGATTA 15040 || || | | ||||| |||||| | | || || |||||| | || ||||||| ||| Sbjct 2299 GTGCACCGGCGATGATGCCGATGCCTCCATGTTCCCGCTCAATAAGCCTGGTACTGCTTA 2240 Query 15041 CCAATGTGCAAAGCGCCATTGCGAAAGCCGGTAAAAAAGGCACGCTGGCTGCATCACTGC 15100 || |||| | | ||||| | ||||| || | || |||||||| |||||| Sbjct 2239 CCGATGTACTGACCGCCAGCGGTAAAGCGGGCGAGTCCGGTACGCTGGCCCGCTCACTGG 2180 Query 15101 AGGCCATCGCAGACCAGTCAAAA-CCCGTCACTGTTGTTGTACGTGTTG---AGGATGGA 15156 | || |||||||||||| ||||| |||||||| || || || || |||| ||| | | Sbjct 2179 ACGCGATCGCAGACCAGGCAAAAACCCGTCACCGTAGTGGTGCGCGTTGCCCAGGGCGAA 2120 Query 15157 ACCGGCGATGACGAGGAAGCTGCGCTCGCACAGACTGTTTCCAACATTATCGGAGGTACG 15216 |||| | | |||| | ||| || || |||||||| || | Sbjct 2119 ACCG------AAGCGGAAAC--------CACC-------TCAAATATTATCGGCGGCGTG 2081 Query 15217 GATGAGAACGGTAAATACACCGGTATCAAGGCTCTCCTGACTGCTCAGGCCGTCACCGGC 15276 || ||||||| | ||||| || ||||| || || | || ||| | | | ||| Sbjct 2080 ACTGCCGACGGTAAGAAAACCGGCATGAAGGCGCTACTTTCCGCGCAGTC-GCAGCTGGC 2022 Query 15277 GTCAAGCCGCGTATTCTTGGG-GTGCCGGGGCTGGATACTAAAGAGGTCGCGGTCGCGCT 15335 || || ||||| |||||| || |||||||||| ||||| | | || | | ||| Sbjct 2021 GTGAAACCGCGCATTCTTCGGCGTGCCGGGGCATGATACGCAGGCCGTATCCACTGAGCT 1962 Query 15336 TGCGTCGGC-TGCCATTAAGT-TACGTGCATTTGCTTAC--GTCAGCGCGTGGGGATGTA 15391 || || || | || | || || ||||| || |||||| | || |||| Sbjct 1961 ---GTGAGCGTGGCGCAGAGCCTGCGGGCCTTTGCGTATATGTCAGCT--TACGGCTGTA 1907 Query 15392 AGACTATTTCCGAAGCGATGGAATATCGTAAAAATTTCAGCCAGCGCGAGCTGATGGTTA 15451 | || | | |||||| || || | || ||||||||||| || ||| ||| Sbjct 1906 AAACCGTGGCAAGAGCGATCACTTACCGCGACAACTTCAGCCAGCGTGAAGGAATGATTA 1847 Query 15452 TCTGGCCTGATTTCCTCGCGTGGGACACCGTCAAAAATACCACCGCAACGGCTTACGCCA 15511 |||||||||| ||| | | ||||| || | | || || ||| |||| | Sbjct 1846 TCTGGCCTGACTTCATAAACTTTGACACGGTGCTGCAGGCGGATGCGACCGCT-ACGCTA 1788 Query 15512 CTGCGCGTGCACTCGGCCTGCGTGCTTACA-TCGACCAGACTGTCGGCTGGCACAAAACC 15570 | || || || || ||| |||| ||| | | ||||| || |||||||||||||||| Sbjct 1787 C-GCCCGCGCCCTTGGC-TGCGCGCTAAAAATCGACGAGCAAACCGGCTGGCACAAAACC 1730 Query 15571 CTGTCTAACGTTGGTGTACAGGGCGTTACCGGCAT--CAGCGCCTCAGTGTTCTGGGATT 15628 ||||||||||| || || | ||||| |||||| | | ||| | |||||||||||| Sbjct 1729 CTGTCTAACGT-GGCGTCAACGGCGTAACCGGCTTGTCTGCGGAT--GTGTTCTGGGATC 1673 Query 15629 TGCAGGCATCCGGCACC-GATGCTGACCTGCTCAACGAGGCCGGGGTTACAACGCTGGTA 15687 |||||| | |||||| | ||||| | ||||| ||| || || || || || || | Sbjct 1672 TGCAGG-ACCCGGCAACTGATGCCGGACTGCTGAACCAGAACGACGTCACCACCTTGATC 1614 Query 15688 CGCAAGGACGGTTTCCGCTTCTGGGGTAACCGCA-CCTGCTCGGATGAC-CCGCTTTTTC 15745 | ||||| |||||||||||||||||| |||| |||| | |||| ||||| || | Sbjct 1613 AGGAAGGATGGTTTCCGCTTCTGGGGTTCCCGCTGCCTGAGTG-ATGAATCCGCTGTTCC 1555 Query 15746 TGTTTGAGAACTACACTCGCACCGCGCAGGTACTGGCCGACACGATGGCCGAGGCGCACA 15805 |||||| |||||||| |||||||||||||||||||| ||||| ||||| |||| || | Sbjct 1554 AGTTTGAAAACTACACCCGCACCGCGCAGGTACTGGCTGACACCATGGCAGAGGGCCATA 1495 Query 15806 TGTGGGCGGTCGACAAGCCCATTACCGCCACGCTCATTCGTGACATTGTTGACGGCATTA 15865 |||||||||| || | ||| ||| | | |||| || || ||| | || || || Sbjct 1494 TGTGGGCGGTGGATATGCCGCTTAACCCGTCGCTGGCCCGCGATATTATCGAAGGTATCC 1435 Query 15866 ACGCCAAATTCCGCGAGCT-GAAATCAAACGGCTACATCGTGGAGGGTAAATGCTGGTTC 15924 ||||||| | ||| || | |||| | |||||| || | | ||| | |||||| | Sbjct 1434 GCGCCAAAATGCGCAGCCTGGTAATC--AGGGCTACCTCATCGGCGGTGATTGCTGGATT 1377 Query 15925 GATGAGGAATCG--AACGACAAGGA-AACCCTCAAGGCCGGGAAACTGTATATCGACTAC 15981 ||||| | || |||||||| || | |||| || ||||||||||| | ||||||||| Sbjct 1376 GATGA--CAGCGTTAACGACAAAGACAGCCCTGAAAGCCGGGAAACTCTGGATCGACTAC 1319 Query 15982 GACTATACACCGGTTCCGCCACTGGAAAGCCTGACCCTGCGCCAGCGTATCACCGATAAA 16041 |||||||| || || ||||| ||||||| ||||| ||||||||||| ||||| || Sbjct 1318 GACTATACGCCAGTGCCGCCGCTGGAAAACCTGATGCTGCGCCAGCGCATCACTGACCGT 1259 Query 16042 TATCTGGTGAATCTGGCCGAATCG-GTCAACAGCTAAGGAGCCTGAAACAACATGGCACT 16100 || |||||| || | || | || || | | ||||| | || |||||| | Sbjct 1258 TACCTGGTGGATTTCACC-ACCCGCGTAAGCGCATAAGGGG---GA---CCCATGGCCTT 1206 Query 16101 ACCCCGTAAA-CTCAAATACCTGAATAT-GTTCAATGACGGCCTCAGCTACATGGGTGTT 16158 ||| || ||| || ||| ||||||| || ||||| | ||| || || ||||| || Sbjct 1205 ACCACGCAAAGCTAAAACACCTGAACATCTTTCAACGCCGGTAACA-CT-GATGGGCATT 1148 Query 16159 GTTGAATCCGTGACGCTGCCGAAACTGACCCGCAAGCTCGAAAACTATCGCGGCGGCGG- 16217 | ||||||||| || ||||||||| | |||||||||| || ||||||||||| ||||| Sbjct 1147 GCTGAATCCGTCACCCTGCCGAAATTTTCCCGCAAGCTTGAGAACTATCGCGG-GGCGGC 1089 Query 16218 TATG 16221 |||| Sbjct 1088 TATG 1085 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97911851263104