Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20maxima_20[genbank_20GCA_5F002006925.1_202017-03-07]
1,504 sequences; 345,757,338 total letters
Query= NC_005839.2
Length=131680
Score E
Sequences producing significant alignments: (Bits) Value
seq6 107 2e-18
seq2 96.9 3e-15
seq3 91.5 1e-13
>seq6
Length=23636167
Score = 107 bits (118), Expect = 2e-18
Identities = 142/195 (73%), Gaps = 4/195 (2%)
Strand=Plus/Minus
Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594
|||||| || ||||||||||| ||||| ||| ||||||| |||||||| ||| || |
Sbjct 3889291 CTCCTTCTGGATGTTGTAATCCGCCAAGGTGCGCCCGTCCTCGAGCTGCTTTCCGGCGAA 3889232
Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TA 48652
|| | |||||||| ||| || | | |||||||||| || || ||||| |
Sbjct 3889231 GATCAGCCGCTGCTGGTCCGGTGGAATCCCTTCCTTGTCCTGGATCTTGGCCTTGACGTT 3889172
Query 48653 GACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTC 48712
| || || || |||| |||| ||||| || ||||| || ||||| | |||||||
Sbjct 3889171 GTCG--ATCGTGTCGGAGCTCTCCACCTCGAGAGTGATGGTCTTGCCGGTCAAAGTTTTC 3889114
Query 48713 ACAAAAATCTGCATC 48727
||||| |||||||||
Sbjct 3889113 ACAAAGATCTGCATC 3889099
Score = 96.9 bits (106), Expect = 3e-15
Identities = 146/205 (71%), Gaps = 2/205 (1%)
Strand=Plus/Minus
Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCT 48581
||| || ||| |||||| ||||||||||||||||| || || || ||||||| ||||
Sbjct 5507499 ATGGAGAGTGGACTCCTTCTGAATGTTGTAATCAGC-AAGAGTACGGCCGTCCTCAAGCT 5507441
Query 48582 GCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTT 48641
|||| || || | || | | ||||||||| || | | |||||||||| ||| |
Sbjct 5507440 GCTTCCCAGCGAAGATGAGCCTCTGCTGATCAGGTGGGATCCCTTCCTTGTCCTGAATCT 5507381
Query 48642 TCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701
| ||||| | | |||||||| | | |||| ||| | || || || || ||||
Sbjct 5507380 TGGCCTTGACATTGTCAATGGTATCCGAACTCTCCACCTCCAGGGTAATCGTCTTCCCGG 5507321
Query 48702 TGAGAGTTTTCACAAAAATCTGCAT 48726
| | || || ||||||||||||||
Sbjct 5507320 TCAATGTCTTGACAAAAATCTGCAT 5507296
Score = 93.3 bits (102), Expect = 4e-14
Identities = 138/194 (71%), Gaps = 4/194 (2%)
Strand=Plus/Minus
Query 48536 TCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAA 48595
|| ||||||||||||||||| ||||| || |||| || || ||||| ||| | |
Sbjct 4424196 TCTTTTTGAATGTTGTAATCGGCCAAAGTGCGGCCGTCTTCGAGTTGCTTCCCGGCAAAG 4424137
Query 48596 ATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAG 48653
|| | ||||||||| ||| ||| | | ||||||||| || || ||||| | |
Sbjct 4424136 ATGAGACGCTGCTGGTCCGGCGGAATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTG 4424077
Query 48654 ACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCA 48713
|| || || |||| |||| |||| || || || || |||||||| |||||||
Sbjct 4424076 TCG--ATTGTGTCGGAGCTCTCCACTTCGAGGGTGATTGTCTTGCCGGTGAGGGTTTTCA 4424019
Query 48714 CAAAAATCTGCATC 48727
|||| |||||||||
Sbjct 4424018 CAAATATCTGCATC 4424005
Score = 89.7 bits (98), Expect = 4e-13
Identities = 142/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTG 48582
||| || ||| ||||||||||||||| |||||||| || || | ||||| |||||
Sbjct 4424665 ATGGAGGGTGGACTCCTTTTGAATGTTATAATCAGCTAAAGTACGGCCATCCTCAAGCTG 4424606
Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642
||| || | | || | | ||||||||| || | | |||||| ||| ||| ||
Sbjct 4424605 CTTCCCAGCAAAGATGAGCCTCTGCTGATCAGGTGGAATCCCTTCCTTATCCTGAATCTT 4424546
Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702
||||| | | |||||||| | | |||| ||| | || || ||||| || ||
Sbjct 4424545 AGCCTTGACATTGTCAATGGTATCAGAACTCTCCACCTCCAGGGTAATTGTTTTCCCAGT 4424486
Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726
||||| || || |||||||||||
Sbjct 4424485 AAGAGTCTTGACGAAAATCTGCAT 4424462
Score = 84.2 bits (92), Expect = 2e-11
Identities = 153/217 (71%), Gaps = 8/217 (4%)
Strand=Plus/Minus
Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576
||| | |||||| || |||||||| || |||||||| ||||| || | || ||
Sbjct 5506593 CACAAGATGAAGCGTCGATTCCTTTTGGATATTGTAATCGGCCAAGGTGCGGCCATCTTC 5506534
Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636
||||| || || || | || | ||||||||| ||| || | | |||||||||
Sbjct 5506533 GAGCTGTTTTCCAGCGAAGATCAGACGCTGCTGGTCCGGAGGGATTCCTTCCTTGTCTTG 5506474
Query 48637 AATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTC-CGTCT-CGACTGTTATGG 48692
|| || ||||| | | || ||||| |||| || ||| || || ||| || ||||
Sbjct 5506473 GATCTTGGCCTTGACGTTGTCG--ATGGTGTCGG-AG-CTCTCGACTTCGAGAGTAATGG 5506418
Query 48693 TTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGT 48729
| || ||||| || |||||||| || |||||||||||
Sbjct 5506417 TCTTGCCGGTTAGGGTTTTCACGAAGATCTGCATCGT 5506381
Score = 84.2 bits (92), Expect = 2e-11
Identities = 148/213 (69%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 48515 AACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCG-TC 48573
||||| | |||||| || ||||| |||||||||||||| || | ||| || ||
Sbjct 5507279 AACACCAGATGAAGAGTTGATTCCTTCTGAATGTTGTAATCCGCGAGC-GTCCTTCCATC 5507221
Query 48574 CTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTC 48633
|||||||||||| || || | || ||||||||||| ||| ||| | | |||||||||
Sbjct 5507220 CTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCCGGCGGAATCCCTTCCTTGTC 5507161
Query 48634 CATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGT 48693
| || || ||||| | || || |||| ||| ||||| || || ||
Sbjct 5507160 CTGGATCTTGGCCTTGACGTTGTCAATCGTGTCGGAGCTCTCGACCTCGAGGGTAATCGT 5507101
Query 48694 TTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
|| || || || ||||| || || ||||||||
Sbjct 5507100 CTTTCCCGTTAGGGTTTTGACGAATATCTGCAT 5507068
Score = 82.4 bits (90), Expect = 6e-11
Identities = 140/196 (71%), Gaps = 8/196 (4%)
Strand=Plus/Minus
Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594
|||||| || ||||||||||| ||||| || ||||||| |||||||| || || |
Sbjct 4326148 CTCCTTCTGTATGTTGTAATCGGCCAAGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCGAA 4326089
Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TA 48652
|| | | |||||| ||| || | | |||||||| ||| ||| ||||| |
Sbjct 4326088 GATAAGCCTCTGCTGGTCCGGGGGTATTCCCTCCTTGTCTTGAATCTTCGCCTTGACGTT 4326029
Query 48653 GACGCTATGGTATCGGTAGACTC-CGTC-TCGACTGTTATGGTTTTACCGGTGAGAGTTT 48710
| || ||||| |||| || ||| || | |||| || || ||||| || || || ||||
Sbjct 4326028 GTCG--ATGGTGTCGG-AG-CTCTCGACTTCGAGAGTAATAGTTTTGCCAGTCAGGGTTT 4325973
Query 48711 TCACAAAAATCTGCAT 48726
|||| || ||||||||
Sbjct 4325972 TCACGAAGATCTGCAT 4325957
>seq2
Length=53008150
Score = 96.9 bits (106), Expect = 3e-15
Identities = 137/193 (71%), Gaps = 0/193 (0%)
Strand=Plus/Plus
Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594
|||||| || ||||||||||| |||| ||| ||||||| |||||||| ||| || |
Sbjct 45803897 CTCCTTCTGGATGTTGTAATCCACCAAGGTGCGCCCGTCCTCAAGCTGCTTTCCGGCGAA 45803956
Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654
|| | |||||||| ||| || | | |||||||||| || || || || |
Sbjct 45803957 GATCAGCCGCTGCTGGTCCGGTGGAATCCCTTCCTTGTCCTGGATCTTAGCCTCGACATT 45804016
Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714
| || || ||| |||| ||||| || ||||| || ||||| | |||||||||
Sbjct 45804017 GTCGATCGTGTCGAAGCTCTCCACCTCGAGAGTGATGGTCTTGCCGGTCAAAGTTTTCAC 45804076
Query 48715 AAAAATCTGCATC 48727
||| |||||||||
Sbjct 45804077 AAAGATCTGCATC 45804089
Score = 89.7 bits (98), Expect = 4e-13
Identities = 135/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594
|||||| || || ||||| |||||||| ||| | |||||||||||||| ||| | |
Sbjct 27083168 CTCCTTCTGGATATTGTAGTCAGCCAAAGTACGCCCATCCTCCAGCTGCTTCCCGGCAAA 27083227
Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654
||| || | ||||||||| || | | |||||||||| ||||| ||| | |
Sbjct 27083228 AATCAACCTCTGCTGATCTGGAGGAATCCCTTCCTTGTCCTGGATTTTAGCCTTCACATT 27083287
Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714
| ||||| || | | ||| ||| | || |||||||| || || | || |||||
Sbjct 27083288 ATCAATGGTGTCTGAACTCTCAACCTCCAGGGTGATGGTTTTTCCTGTCAATGTCTTCAC 27083347
Query 48715 AAAAATCTGCAT 48726
|||||||||||
Sbjct 27083348 GAAAATCTGCAT 27083359
Score = 82.4 bits (90), Expect = 6e-11
Identities = 134/193 (69%), Gaps = 0/193 (0%)
Strand=Plus/Plus
Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594
|||||| || ||||| ||||| || | | ||| | ||||| ||||| ||||| | |
Sbjct 27088161 CTCCTTCTGGATGTTATAATCGGCGAGTGTGCGCCCATCCTCAAGCTGTTTACCAGCAAA 27088220
Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654
|| | | ||||||||| || | | |||||||||| || || |||| |
Sbjct 27088221 GATAAGCCTCTGCTGATCTGGTGGAATCCCTTCCTTGTCCTGGATCTTAGCTTTGACATT 27088280
Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714
| |||||||||| || ||| | ||||||||||| ||||||||||| |||||
Sbjct 27088281 ATCGATGGTATCGGAGCTTTCAACCTCAAGGGTTATGGTTTTTCCGGTGAGAGTCTTCAC 27088340
Query 48715 AAAAATCTGCATC 48727
||| || ||||||
Sbjct 27088341 AAAGATTTGCATC 27088353
>seq3
Length=30666748
Score = 91.5 bits (100), Expect = 1e-13
Identities = 136/193 (70%), Gaps = 0/193 (0%)
Strand=Plus/Plus
Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594
|||||| || ||||||||| | ||||| ||| ||||||| |||||||| ||| || |
Sbjct 27013327 CTCCTTCTGGATGTTGTAAACCGCCAAGGTGCGCCCGTCCTCGAGCTGCTTTCCGGCGAA 27013386
Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654
|| | |||||||| || || | | |||||||||| || || ||||| |
Sbjct 27013387 GATCAGCCGCTGCTGGTCTGGTGGAATCCCTTCCTTGTCCTGGATCTTAGCCTTGACATT 27013446
Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714
| || | |||| |||| ||||| || ||||| || ||| | | |||||||||
Sbjct 27013447 GTCGATCATGTCGGAGCTCTCCACCTCGAGAGTGATGGTCTTGCCGATCAAAGTTTTCAC 27013506
Query 48715 AAAAATCTGCATC 48727
||| |||||||||
Sbjct 27013507 AAAGATCTGCATC 27013519
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 421243478465504
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