Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20maxima_20[genbank_20GCA_5F002006925.1_202017-03-07] 1,504 sequences; 345,757,338 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq6 107 2e-18 seq2 96.9 3e-15 seq3 91.5 1e-13 >seq6 Length=23636167 Score = 107 bits (118), Expect = 2e-18 Identities = 142/195 (73%), Gaps = 4/195 (2%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || ||||||||||| ||||| ||| ||||||| |||||||| ||| || | Sbjct 3889291 CTCCTTCTGGATGTTGTAATCCGCCAAGGTGCGCCCGTCCTCGAGCTGCTTTCCGGCGAA 3889232 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TA 48652 || | |||||||| ||| || | | |||||||||| || || ||||| | Sbjct 3889231 GATCAGCCGCTGCTGGTCCGGTGGAATCCCTTCCTTGTCCTGGATCTTGGCCTTGACGTT 3889172 Query 48653 GACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTC 48712 | || || || |||| |||| ||||| || ||||| || ||||| | ||||||| Sbjct 3889171 GTCG--ATCGTGTCGGAGCTCTCCACCTCGAGAGTGATGGTCTTGCCGGTCAAAGTTTTC 3889114 Query 48713 ACAAAAATCTGCATC 48727 ||||| ||||||||| Sbjct 3889113 ACAAAGATCTGCATC 3889099 Score = 96.9 bits (106), Expect = 3e-15 Identities = 146/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCT 48581 ||| || ||| |||||| ||||||||||||||||| || || || ||||||| |||| Sbjct 5507499 ATGGAGAGTGGACTCCTTCTGAATGTTGTAATCAGC-AAGAGTACGGCCGTCCTCAAGCT 5507441 Query 48582 GCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTT 48641 |||| || || | || | | ||||||||| || | | |||||||||| ||| | Sbjct 5507440 GCTTCCCAGCGAAGATGAGCCTCTGCTGATCAGGTGGGATCCCTTCCTTGTCCTGAATCT 5507381 Query 48642 TCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701 | ||||| | | |||||||| | | |||| ||| | || || || || |||| Sbjct 5507380 TGGCCTTGACATTGTCAATGGTATCCGAACTCTCCACCTCCAGGGTAATCGTCTTCCCGG 5507321 Query 48702 TGAGAGTTTTCACAAAAATCTGCAT 48726 | | || || |||||||||||||| Sbjct 5507320 TCAATGTCTTGACAAAAATCTGCAT 5507296 Score = 93.3 bits (102), Expect = 4e-14 Identities = 138/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 48536 TCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAA 48595 || ||||||||||||||||| ||||| || |||| || || ||||| ||| | | Sbjct 4424196 TCTTTTTGAATGTTGTAATCGGCCAAAGTGCGGCCGTCTTCGAGTTGCTTCCCGGCAAAG 4424137 Query 48596 ATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAG 48653 || | ||||||||| ||| ||| | | ||||||||| || || ||||| | | Sbjct 4424136 ATGAGACGCTGCTGGTCCGGCGGAATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTG 4424077 Query 48654 ACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCA 48713 || || || |||| |||| |||| || || || || |||||||| ||||||| Sbjct 4424076 TCG--ATTGTGTCGGAGCTCTCCACTTCGAGGGTGATTGTCTTGCCGGTGAGGGTTTTCA 4424019 Query 48714 CAAAAATCTGCATC 48727 |||| ||||||||| Sbjct 4424018 CAAATATCTGCATC 4424005 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTG 48582 ||| || ||| ||||||||||||||| |||||||| || || | ||||| ||||| Sbjct 4424665 ATGGAGGGTGGACTCCTTTTGAATGTTATAATCAGCTAAAGTACGGCCATCCTCAAGCTG 4424606 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| || | | || | | ||||||||| || | | |||||| ||| ||| || Sbjct 4424605 CTTCCCAGCAAAGATGAGCCTCTGCTGATCAGGTGGAATCCCTTCCTTATCCTGAATCTT 4424546 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||||| | | |||||||| | | |||| ||| | || || ||||| || || Sbjct 4424545 AGCCTTGACATTGTCAATGGTATCAGAACTCTCCACCTCCAGGGTAATTGTTTTCCCAGT 4424486 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 ||||| || || ||||||||||| Sbjct 4424485 AAGAGTCTTGACGAAAATCTGCAT 4424462 Score = 84.2 bits (92), Expect = 2e-11 Identities = 153/217 (71%), Gaps = 8/217 (4%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| | |||||| || |||||||| || |||||||| ||||| || | || || Sbjct 5506593 CACAAGATGAAGCGTCGATTCCTTTTGGATATTGTAATCGGCCAAGGTGCGGCCATCTTC 5506534 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 ||||| || || || | || | ||||||||| ||| || | | ||||||||| Sbjct 5506533 GAGCTGTTTTCCAGCGAAGATCAGACGCTGCTGGTCCGGAGGGATTCCTTCCTTGTCTTG 5506474 Query 48637 AATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTC-CGTCT-CGACTGTTATGG 48692 || || ||||| | | || ||||| |||| || ||| || || ||| || |||| Sbjct 5506473 GATCTTGGCCTTGACGTTGTCG--ATGGTGTCGG-AG-CTCTCGACTTCGAGAGTAATGG 5506418 Query 48693 TTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGT 48729 | || ||||| || |||||||| || ||||||||||| Sbjct 5506417 TCTTGCCGGTTAGGGTTTTCACGAAGATCTGCATCGT 5506381 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 48515 AACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCG-TC 48573 ||||| | |||||| || ||||| |||||||||||||| || | ||| || || Sbjct 5507279 AACACCAGATGAAGAGTTGATTCCTTCTGAATGTTGTAATCCGCGAGC-GTCCTTCCATC 5507221 Query 48574 CTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTC 48633 |||||||||||| || || | || ||||||||||| ||| ||| | | ||||||||| Sbjct 5507220 CTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCCGGCGGAATCCCTTCCTTGTC 5507161 Query 48634 CATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGT 48693 | || || ||||| | || || |||| ||| ||||| || || || Sbjct 5507160 CTGGATCTTGGCCTTGACGTTGTCAATCGTGTCGGAGCTCTCGACCTCGAGGGTAATCGT 5507101 Query 48694 TTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || || || || ||||| || || |||||||| Sbjct 5507100 CTTTCCCGTTAGGGTTTTGACGAATATCTGCAT 5507068 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/196 (71%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || ||||||||||| ||||| || ||||||| |||||||| || || | Sbjct 4326148 CTCCTTCTGTATGTTGTAATCGGCCAAGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCGAA 4326089 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TA 48652 || | | |||||| ||| || | | |||||||| ||| ||| ||||| | Sbjct 4326088 GATAAGCCTCTGCTGGTCCGGGGGTATTCCCTCCTTGTCTTGAATCTTCGCCTTGACGTT 4326029 Query 48653 GACGCTATGGTATCGGTAGACTC-CGTC-TCGACTGTTATGGTTTTACCGGTGAGAGTTT 48710 | || ||||| |||| || ||| || | |||| || || ||||| || || || |||| Sbjct 4326028 GTCG--ATGGTGTCGG-AG-CTCTCGACTTCGAGAGTAATAGTTTTGCCAGTCAGGGTTT 4325973 Query 48711 TCACAAAAATCTGCAT 48726 |||| || |||||||| Sbjct 4325972 TCACGAAGATCTGCAT 4325957 >seq2 Length=53008150 Score = 96.9 bits (106), Expect = 3e-15 Identities = 137/193 (71%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || ||||||||||| |||| ||| ||||||| |||||||| ||| || | Sbjct 45803897 CTCCTTCTGGATGTTGTAATCCACCAAGGTGCGCCCGTCCTCAAGCTGCTTTCCGGCGAA 45803956 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | |||||||| ||| || | | |||||||||| || || || || | Sbjct 45803957 GATCAGCCGCTGCTGGTCCGGTGGAATCCCTTCCTTGTCCTGGATCTTAGCCTCGACATT 45804016 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | || || ||| |||| ||||| || ||||| || ||||| | ||||||||| Sbjct 45804017 GTCGATCGTGTCGAAGCTCTCCACCTCGAGAGTGATGGTCTTGCCGGTCAAAGTTTTCAC 45804076 Query 48715 AAAAATCTGCATC 48727 ||| ||||||||| Sbjct 45804077 AAAGATCTGCATC 45804089 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || || ||||| |||||||| ||| | |||||||||||||| ||| | | Sbjct 27083168 CTCCTTCTGGATATTGTAGTCAGCCAAAGTACGCCCATCCTCCAGCTGCTTCCCGGCAAA 27083227 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 ||| || | ||||||||| || | | |||||||||| ||||| ||| | | Sbjct 27083228 AATCAACCTCTGCTGATCTGGAGGAATCCCTTCCTTGTCCTGGATTTTAGCCTTCACATT 27083287 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | ||||| || | | ||| ||| | || |||||||| || || | || ||||| Sbjct 27083288 ATCAATGGTGTCTGAACTCTCAACCTCCAGGGTGATGGTTTTTCCTGTCAATGTCTTCAC 27083347 Query 48715 AAAAATCTGCAT 48726 ||||||||||| Sbjct 27083348 GAAAATCTGCAT 27083359 Score = 82.4 bits (90), Expect = 6e-11 Identities = 134/193 (69%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || ||||| ||||| || | | ||| | ||||| ||||| ||||| | | Sbjct 27088161 CTCCTTCTGGATGTTATAATCGGCGAGTGTGCGCCCATCCTCAAGCTGTTTACCAGCAAA 27088220 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | | ||||||||| || | | |||||||||| || || |||| | Sbjct 27088221 GATAAGCCTCTGCTGATCTGGTGGAATCCCTTCCTTGTCCTGGATCTTAGCTTTGACATT 27088280 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | |||||||||| || ||| | ||||||||||| ||||||||||| ||||| Sbjct 27088281 ATCGATGGTATCGGAGCTTTCAACCTCAAGGGTTATGGTTTTTCCGGTGAGAGTCTTCAC 27088340 Query 48715 AAAAATCTGCATC 48727 ||| || |||||| Sbjct 27088341 AAAGATTTGCATC 27088353 >seq3 Length=30666748 Score = 91.5 bits (100), Expect = 1e-13 Identities = 136/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || ||||||||| | ||||| ||| ||||||| |||||||| ||| || | Sbjct 27013327 CTCCTTCTGGATGTTGTAAACCGCCAAGGTGCGCCCGTCCTCGAGCTGCTTTCCGGCGAA 27013386 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | |||||||| || || | | |||||||||| || || ||||| | Sbjct 27013387 GATCAGCCGCTGCTGGTCTGGTGGAATCCCTTCCTTGTCCTGGATCTTAGCCTTGACATT 27013446 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | || | |||| |||| ||||| || ||||| || ||| | | ||||||||| Sbjct 27013447 GTCGATCATGTCGGAGCTCTCCACCTCGAGAGTGATGGTCTTGCCGATCAAAGTTTTCAC 27013506 Query 48715 AAAAATCTGCATC 48727 ||| ||||||||| Sbjct 27013507 AAAGATCTGCATC 27013519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421243478465504