Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20maxima_20[genbank_20GCA_5F002006925.1_202017-03-07] 1,504 sequences; 345,757,338 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq8 114 7e-21 seq7 114 7e-21 seq6 111 8e-20 seq5 109 3e-19 seq1 107 1e-18 seq2 105 3e-18 >seq8 Length=21028080 Score = 114 bits (126), Expect = 7e-21 Identities = 79/89 (89%), Gaps = 1/89 (1%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || ||||||| | ||||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 3152486 AAAAAAAAAT-ATATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 3152428 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| ||||||||||||||| |||| Sbjct 3152427 GACGCTCTAACCAACTGAGCTAATAGGCC 3152399 Score = 113 bits (124), Expect = 2e-20 Identities = 79/90 (88%), Gaps = 3/90 (3%) Strand=Plus/Minus Query 11444 AAAAAA---TCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 |||||| ||||| ||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 16737921 AAAAAAGCCTCAAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 16737862 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||||| ||||||||||||||| ||||| Sbjct 16737861 GACGCTCTAACCAACTGAGCTAATAGGCCG 16737832 Score = 109 bits (120), Expect = 3e-19 Identities = 77/88 (88%), Gaps = 2/88 (2%) Strand=Plus/Minus Query 11444 AAAAAATCAAATT--GGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 ||| ||| ||||| |||||||| | | |||||||| |||||||||||||||||||||| Sbjct 3676891 AAACAATAAAATTTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACG 3676832 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| ||||||||||||||| |||| Sbjct 3676831 ACGCTCTAACCAACTGAGCTAATAGGCC 3676804 >seq7 Length=22269817 Score = 114 bits (126), Expect = 7e-21 Identities = 82/95 (86%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 11435 AGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTAT 11494 ||||||| ||||| ||| ||||||||| | | |||||||| ||||||||||||||| Sbjct 19734838 AGAATTATCTCAAAATAAAAATGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTAT 19734897 Query 11495 TAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||| ||||||||||||||| |||| Sbjct 19734898 TAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 19734932 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 8061312 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 8061371 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 8061372 TGAGCTAATAGGCC 8061385 >seq6 Length=23636167 Score = 111 bits (122), Expect = 8e-20 Identities = 69/75 (92%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 13345367 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 13345308 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||||||||| Sbjct 13345307 CTGAGCTAATGGGCC 13345293 Score = 107 bits (118), Expect = 1e-18 Identities = 75/85 (88%), Gaps = 1/85 (1%) Strand=Plus/Minus Query 11446 AAAATCAA-ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||| ||| | ||||||||| | | |||||||| ||||||||||||||||||||||||| Sbjct 12500894 AAAAACAACACTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACG 12500835 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| ||||||||||||||| |||| Sbjct 12500834 CTCTAACCAACTGAGCTAATAGGCC 12500810 >seq5 Length=49531769 Score = 109 bits (120), Expect = 3e-19 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 |||||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||| Sbjct 7636037 AATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACC 7635978 Query 11513 AACTGAGCTAATGGGCC 11529 |||||||||||| |||| Sbjct 7635977 AACTGAGCTAATAGGCC 7635961 >seq1 Length=32082701 Score = 107 bits (118), Expect = 1e-18 Identities = 69/76 (91%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 12317835 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 12317776 Query 11516 TGAGCTAATGGGCCGT 11531 ||||||||| |||||| Sbjct 12317775 TGAGCTAATAGGCCGT 12317760 Score = 105 bits (116), Expect = 3e-18 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 795369 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 795310 Query 11515 CTGAGCTAATGGGCC 11529 |||||||||| |||| Sbjct 795309 CTGAGCTAATAGGCC 795295 Score = 96.9 bits (106), Expect = 2e-15 Identities = 78/94 (83%), Gaps = 2/94 (2%) Strand=Plus/Minus Query 11438 ATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAG 11497 |||||||| |||| |||||||||| | |||||||| |||||||| ||||||||| Sbjct 4954936 ATTAATAATT--TCAACTTGGCCCATGCAGTTCTCGAACCTGCGACCTTCACGTTATTAG 4954879 Query 11498 CACGACGCTCTRACCAACTGAGCTAATGGGCCGT 11531 ||||||||||| ||||||||||| ||| ||| || Sbjct 4954878 CACGACGCTCTAACCAACTGAGCAAATAGGCAGT 4954845 >seq2 Length=53008150 Score = 105 bits (116), Expect = 3e-18 Identities = 75/87 (86%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||| | | |||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 31986593 AAAAATTGATTTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 31986534 Query 11504 GCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||| |||| |||||||||| ||||| Sbjct 31986533 GCTCTAACCAGCTGAGCTAATAGGCCG 31986507 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 25064225 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 25064284 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 25064285 TGAGCTAATAGGCC 25064298 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261486406866304