Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20maxima_20[genbank_20GCA_5F002006925.1_202017-03-07] 1,504 sequences; 345,757,338 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq8 152 8e-33 seq4 149 1e-31 seq6 100 4e-17 >seq8 Length=21028080 Score = 152 bits (168), Expect = 8e-33 Identities = 195/269 (72%), Gaps = 0/269 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | ||||| |||||||| || || ||||| |||||||| || Sbjct 15784141 CGCCAAGCGTCACCGTAAGGTGCTTCGCGATAACATTCAGGGTATCACAAAGCCAGCAAT 15784200 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||| |||||||| | ||||||||||||||| || ||| ||| |||| || |||| Sbjct 15784201 CCGGCGTTTGGCTCGTAGAGGTGGAGTCAAGCGTATCAGTGGCTTGATCTACGAGGAGAC 15784260 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| || ||||||| ||| | ||| ||| || | ||| || | ||| || || Sbjct 15784261 ACGTGGCGTCCTGAAGATATTCTTGGAGAACGTCATACGTGACGCCGTGACCTACACTGA 15784320 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| | | ||||| |||||| | ||||| |||| || || | || | || || Sbjct 15784321 GCACGCCAGGAGAAAGACCGTCACCGCGATGGACGTCGTTTACGCTCTCAAGAGGCAGGG 15784380 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAAT 16700 | | | ||||||| ||||| |||||| Sbjct 15784381 CAGGACTCTTTATGGATTTGGGGGTTAAT 15784409 Score = 131 bits (144), Expect = 3e-26 Identities = 189/267 (71%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| || | |||||| |||||||| || |||||||| ||||| || ||| Sbjct 16089869 GCAAAGCGTCACCGTAAGGTTCTTCGCGATAACATTCAGGGAATCACAAAGCCCGCAATC 16089810 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || |||||||||||| | ||||| || |||||| || ||| ||| |||| || |||| Sbjct 16089809 CGGCGTCTGGCTCGTAGGGGTGGGGTGAAGCGTATCAGTGGGTTGATCTACGAGGAGACA 16089750 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| |||||||||| | ||| ||| |||| || || | || || ||| Sbjct 16089749 CGTGGCGTTCTGAAGATCTTTTTGGAGAACGTCATCCGCGACGCCGTGACTTACACTGAG 16089690 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 |||||| | ||||| || || | ||||| |||| || || | || | || ||| Sbjct 16089689 CACGCTCGGAGGAAGACGGTGACGGCGATGGACGTCGTGTACGCGCTCAAGAGGCAGGGC 16089630 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | | || || ||||| ||||| Sbjct 16089629 AGGACTCTCTACGGGTTTGGTGGTTAA 16089603 >seq4 Length=29346085 Score = 149 bits (164), Expect = 1e-31 Identities = 177/240 (74%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 |||||||| || || ||||| ||||| |||||||| || ||||| | ||||| |||||| Sbjct 27187206 GATAACATTCAGGGGATCACAAAGCCGGCTATCCGGCGGCTGGCGAGGCGTGGCGGAGTC 27187265 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| || || || | || || |||| ||| | ||||| |||||||| | || Sbjct 27187266 AAGCGTATCAGCGGTCTGATTTACGAGGAGACTCGCGGGGTTTTAAAGATCTTTTTGGAG 27187325 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||| || | |||||| | || || ||||||||| ||||||||||||||| || Sbjct 27187326 AACGTGATTCGCGATGCTGTGACTTACACTGAGCACGCTCGTCGTAAGACTGTCACCGCC 27187385 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||||| | || ||||| ||||| | || ||| | | |||| ||||| || ||||| Sbjct 27187386 ATGGATGTTGTTTATGCTTTGAAGAGGCAGGGCAGGACCCTTTACGGTTTCGGTGGTTAA 27187445 >seq6 Length=23636167 Score = 100 bits (110), Expect = 4e-17 Identities = 185/269 (69%), Gaps = 2/269 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||| | ||||||| | | || || |||||||| || || ||||||||||| ||||| Sbjct 6712831 GCCAAGAGGCATCGCA-AGGTGTTGCGTGATAACATTCAGGGCATCACCAAGCCGGCTAT 6712889 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || ||| |||| | | || || || ||| | || || | |||| || |||| Sbjct 6712890 TCGCCGTTTGGCCAGAAGAGGAGGCGTTAAGAGAATCAGCGGTCTCATCTACGAGGAGAC 6712949 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||||||||| | ||| ||| || | |||||| | ||| || || Sbjct 6712950 ACGCGGCGTCCTCAAGATCTTCTTGGAGAACGTCATTCGCGATGCTGTGACCTACACTGA 6713009 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||| || ||||| || ||| |||||||| |||| ||||| | || | || || Sbjct 6713010 GCACGCTCGCCGAAAGACGGTGACCGCCATGGATGTCGTTTATGCGCTCAAGAGGCAGGG 6713069 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAAT 16700 | | | | ||||| ||||| ||| || Sbjct 6713070 CAGGACTCTCTATGGGTTTGGTGGTTGAT 6713098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79073824882272