Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20maxima_20[genbank_20GCA_5F002006925.1_202017-03-07] 1,504 sequences; 345,757,338 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq2 116 4e-21 seq1288 91.5 1e-13 seq8 89.7 5e-13 seq7 89.7 5e-13 seq6 89.7 5e-13 >seq2 Length=53008150 Score = 116 bits (128), Expect = 4e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | |||||||| || | |||||||| | |||||| | || | ||| | Sbjct 27084727 ATGCAGATCTTTGTAAAGACCCTCACTGGAAAGACTATCACCCTTGAGGTGGAAAGCTCC 27084668 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| || | |||||| || ||| ||||| |||||||| || || || || Sbjct 27084667 GACACCATTGACAATGTCAAAGCCAAAATTCAGGACAAGGAAGGGATCCCACCAGACCAG 27084608 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||||| || |||| | ||||||||||| || |||| | | | | |||||||||| Sbjct 27084607 CAAAGGCTTATTTTTGCTGGCAAACAACTTGAGGATGGCCGCACCCTTGCCGACTATAAC 27084548 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 ||||| || || || || |||| |||||||| | || ||||| |||| Sbjct 27084547 ATTCAGAAGGAGTCCACACTCCACCTGGTCCTCCGTCTAAGAGGTGGAA 27084499 Score = 93.3 bits (102), Expect = 4e-14 Identities = 151/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||||||||| | |||||||| | |||||| | || | ||| | Sbjct 27127762 ATGCAGATCTTTGTAAAAACCCTCACTGGAAAGACTATCACCCTGGAGGTGGAAAGCTCC 27127703 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| || | |||||| || ||| || || |||||||| || || || || Sbjct 27127702 GACACCATTGACAATGTCAAAGCCAAAATTCAGGATAAGGAAGGGATCCCACCAGACCAG 27127643 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGAT-GATAGAAACGT-CAGCGACTATA 26946 ||||| ||||| | | ||| |||||||| || ||| || | || | || ||||| | Sbjct 27127642 CAAAGGCTCATCTTTGCCGGTAAACAACTAGAGGATGGACGCACACTTGCA--GACTACA 27127585 Query 26947 ACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 |||| || || ||||| || | ||| ||||||| Sbjct 27127584 ACATCCAGAAGGAATCAACCCTTCATTTGGTCCT 27127551 >seq1288 Length=1199740 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/137 (76%), Gaps = 2/137 (1%) Strand=Plus/Minus Query 26862 GACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAA 26921 ||||| ||||| || ||||| ||||| || ||||| |||| | || |||||| | ||| Sbjct 1162949 GACAAGGAAGGCATTCCTCCGGATCAGCAGAGACTGATTTTTGCTGGTAAACAATTGGAA 1162890 Query 26922 GATGATAGAAACGTCAGC-GACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 |||| |||| || || || |||||||||||||| || || || | || ||||||| Sbjct 1162889 GATGGCAGAA-CGCTTGCAGATTATAACATTCAAAAGGAGTCGACGCTTCACTTGGTCCT 1162831 Query 26981 GAGACTTAGAGGAGGAA 26997 ||| || || ||||||| Sbjct 1162830 GAGGCTCAGGGGAGGAA 1162814 >seq8 Length=21028080 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || ||||| |||| ||||| | || ||| | || | |||||| Sbjct 17550878 ATGCAGATCTTCGTGAAAACCCTAACGGGAAAGACCATAACCCTAGAGGTCGAATCATCG 17550937 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | ||||| ||||| ||||| || ||||| || || || || Sbjct 17550938 GACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGGATTCCACCGGACCAG 17550997 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | ||||| | || ||| || || ||||| || | |||| | | |||||| ||| Sbjct 17550998 CAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAGGACGGGAGAACCCTAGCCGACTACAAC 17551057 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || ||||| || || || |||| || ||||| Sbjct 17551058 ATCCAAAAGGAGTCAACACTCCACCTCGTCCT 17551089 >seq7 Length=22269817 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || ||||| |||| ||||| | || ||| | || | |||||| Sbjct 17755097 ATGCAGATCTTCGTGAAAACCCTAACGGGAAAGACCATAACCCTAGAGGTCGAATCATCG 17755038 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | ||||| ||||| ||||| || ||||| || || || || Sbjct 17755037 GACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGGATTCCACCGGACCAG 17754978 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | ||||| | || ||| || || ||||| || | |||| | | |||||| ||| Sbjct 17754977 CAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAGGACGGCAGAACCCTAGCCGACTACAAC 17754918 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || ||||| || || || |||| || ||||| Sbjct 17754917 ATCCAAAAGGAGTCAACACTCCACCTCGTCCT 17754886 >seq6 Length=23636167 Score = 89.7 bits (98), Expect = 5e-13 Identities = 159/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 || ||||| | ||||| ||||| | || || || | |||||| ||||| | || Sbjct 4424003 AAGATGCAGATATTTGTGAAAACCCTCACCGGCAAGACAATCACCCTCGAAGTGGAGAGC 4424062 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 |||||| ||||| | ||||| ||||| ||||| || || || || || || Sbjct 4424063 TCCGACACAATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATTCCGCCGGAC 4424122 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 || || | ||||| | | ||| || ||||||||||| | | | | ||| || Sbjct 4424123 CAGCAGCGTCTCATCTTTGCCGGGAAGCAACTCGAAGACGGCCGCACTTTGGCCGATTAC 4424182 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 ||||||||||||||||| ||| | ||||| ||||| || ||| | || |||| Sbjct 4424183 AACATTCAAAAAGAATCCACTTTGCATCTTGTCCTCAGGCTTCGTGGTGGAA 4424234 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 |||||| | || || || || || || || || |||||||| | || | || Sbjct 3889555 AATGCAGATCTTCGTCAAGACGTTGACCGGGAAGACGATCACCCTGGAGGTGGAGAGCTC 3889614 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 |||||| ||||| | || || ||||| |||||||| ||||| ||||| || || Sbjct 3889615 CGACACGATCGACAACGTGAAGGCCAAGATCCAGGACAAAGAGGGGATTCCTCCGGACCA 3889674 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 || || ||||| | || |||||| || ||||| |||| | | | ||| || || Sbjct 3889675 GCAGAGGCTCATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGGACTCTTGCCGATTACAA 3889734 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||||||| || || ||| |||| || ||||| Sbjct 3889735 CATTCAAAAGGAGTCCACTCTCCACCTTGTCCT 3889767 Score = 82.4 bits (90), Expect = 7e-11 Identities = 150/215 (70%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATT--AGAATCAA 26826 ||||| | || || ||||| ||||||| || ||||||| |||| | ||| | | Sbjct 4416810 ATGCAGATCTTCGTCAAAACCCTAACTGGGAAGACGATCACTCTCGAGGTGGAGAGTTCA 4416869 Query 26827 ACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATC 26886 || || || || | ||||| ||||| ||||| |||||||| || || |||| Sbjct 4416870 --GATACGATTGATAATGTCAAGGCCAAGATCCAAGACAAGGAAGGGATCCCACCAGATC 4416927 Query 26887 AACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTAT 26945 |||||||| | || | | ||| |||||| | ||||| | | |||| || |||||| Sbjct 4416928 AACAAAGATTGATCTTTGCCGGAAAACAATTGGAAGACGGCCG-CACGTTGGCTGACTAT 4416986 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||| || ||||| || ||| | || || ||||| Sbjct 4416987 AACATCCAGAAAGAGTCAACTCTTCACCTTGTCCT 4417021 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478653401146880