Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20maxima_20[genbank_20GCA_5F002006925.1_202017-03-07] 1,504 sequences; 345,757,338 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq6 113 4e-20 seq1288 96.9 3e-15 seq2 91.5 1e-13 >seq6 Length=23636167 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| | || || || |||||||| |||| |||||| | | Sbjct 4416582 ATGCAGATCTTCGTCAAAACCCTGACCGGGAAGACGATTACCCTCGAGGTCGAGAGCTCC 4416641 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| ||||| | || || ||||| ||||| || || || |||||||| || Sbjct 4416642 GACACGATCGATAACGTGAAGGCCAAGATCCAAGACAAGGAGGGAATCCCTCCCGACCAG 4416701 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| ||||| | || ||| |||||||||||||| | | | | | | |||||| ||| Sbjct 4416702 CAGAGGCTGATCTTCGCCGGAAAGCAACTCGAAGACGGCCGGACCTTGGCCGATTACAAC 4416761 Query 24171 ATTCAAAAAGAATCTAC 24187 || ||||||||||| || Sbjct 4416762 ATCCAAAAAGAATCCAC 4416778 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| |||| || || |||||||| |||| |||||| | | Sbjct 4366045 ATGCAGATCTTCGTCAAAACCCTAACCGGGAAGACGATTACCCTCGAGGTCGAGAGCTCC 4366104 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| ||||| | || || ||||| ||||| || || || |||||||| || Sbjct 4366105 GACACGATCGATAACGTGAAGGCCAAGATCCAAGACAAGGAGGGAATCCCTCCCGACCAG 4366164 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| ||||| | || ||| |||||| | ||||| | | | | | | |||||| ||| Sbjct 4366165 CAGAGGCTGATCTTCGCCGGAAAGCAATTGGAAGACGGCCGCACCTTGGCCGATTACAAC 4366224 Query 24171 ATTCAAAAAGAATCTAC 24187 || ||||||||||| || Sbjct 4366225 ATCCAAAAAGAATCCAC 4366241 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| |||| || || | ||||| ||||||||||| | | Sbjct 5506384 ATGCAGATCTTCGTGAAAACCCTAACCGGCAAGACCATTACTCTCGAAGTCGAGAGCTCC 5506443 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| ||||| ||||| ||||| || ||||| || || Sbjct 5506444 GACACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCTCCGGACCAG 5506503 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | ||||| | || || || || |||||||||| | | | | | |||||| || Sbjct 5506504 CAGCGTCTGATCTTCGCTGGAAAACAGCTCGAAGATGGCCGCACCTTGGCCGATTACAAT 5506563 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200 || ||||| ||||| || ||||| | ||| Sbjct 5506564 ATCCAAAAGGAATCGACGCTTCATCTTGTG 5506593 Score = 102 bits (112), Expect = 7e-17 Identities = 143/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||| ||||| | || || ||||| |||| || ||| |||| || ||||||| ||| Sbjct 4365813 CAATATGCAGATCTTCGTGAAAACCCTAACCGGCAAAACGATCACTCTCGAAGTGGAGAG 4365872 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 | ||||| ||||| | ||||| ||||| ||||| || || || ||||| || Sbjct 4365873 CTCTGACACAATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGGATCCCTCCGGA 4365932 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 ||| ||| | ||||| | || ||| |||||||||||||||| | | | | | |||||| Sbjct 4365933 TCAGCAGCGTCTGATCTTCGCCGGAAAGCAACTCGAAGATGGCCGCACCTTGGCCGATTA 4365992 Query 24167 TAACATTCAAAAAGAATCTAC 24187 ||||| || || || || || Sbjct 4365993 CAACATCCAGAAGGAGTCAAC 4366013 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| |||| ||||| |||| ||| ||||||||||| | | Sbjct 5506840 ATGCAGATATTCGTCAAAACCCTAACGGGAAAGACGATCACCCTCGAAGTCGAGAGCTCC 5506899 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| ||||| | ||||| ||||| ||||| ||||| || || || || || Sbjct 5506900 GACACGATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGGATTCCGCCGGACCAG 5506959 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| ||||| | | ||| ||||||||||| || | | | | | |||||| || Sbjct 5506960 CAGAGGCTGATCTTTGCCGGAAAGCAACTCGAGGACGGCCGCACTCTGGCCGATTACAAT 5507019 Query 24171 ATTCAAAAAGAATCTACAATTCA 24193 || || || ||||| ||| |||| Sbjct 5507020 ATCCAGAAGGAATCAACACTTCA 5507042 Score = 96.9 bits (106), Expect = 3e-15 Identities = 142/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||| ||||| | || || ||||| |||| || ||| |||| || ||||||| ||| Sbjct 4416350 CAATATGCAGATCTTCGTGAAAACCCTAACCGGCAAAACGATCACTCTCGAAGTGGAGAG 4416409 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 | ||||||||||| | || || ||||| ||||| || || || ||||| || Sbjct 4416410 CTCTGACACCATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAGGGGATCCCTCCGGA 4416469 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 ||| ||| | ||||| | | ||| |||||||||||||||| | | | | | |||||| Sbjct 4416470 TCAGCAGCGTCTGATCTTTGCCGGAAAGCAACTCGAAGATGGCCGCACCTTGGCCGATTA 4416529 Query 24167 TAACATTCAAAAAGAATCTAC 24187 ||||| || || || || || Sbjct 4416530 CAACATCCAGAAGGAGTCAAC 4416550 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| | ||||| ||| | ||||| ||||||||||| | | Sbjct 4325957 ATGCAGATCTTCGTGAAAACCCTGACTGGCAAAACTATTACTCTCGAAGTCGAGAGCTCC 4326016 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| |||||| ||||| || || ||||| || || || Sbjct 4326017 GACACCATCGACAACGTCAAGGCGAAGATTCAAGACAAGGAGGGAATACCCCCGGACCAG 4326076 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| || || | || || ||||| ||||| || | | | | | | |||||| ||| Sbjct 4326077 CAGAGGCTTATCTTCGCTGGAAAGCAGCTCGAGGACGGCCGCACCTTGGCCGATTACAAC 4326136 Query 24171 ATTCAAAAAGAATCTAC 24187 || || || || || || Sbjct 4326137 ATACAGAAGGAGTCAAC 4326153 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 || ||||| | ||||| ||||| | || || || | || ||| ||||||| ||| | Sbjct 4424003 AAGATGCAGATATTTGTGAAAACCCTCACCGGCAAGACAATCACCCTCGAAGTGGAGAGC 4424062 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 |||||| ||||| | ||||| ||||| ||||| || || || || || || Sbjct 4424063 TCCGACACAATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATTCCGCCGGAC 4424122 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 || ||| | || || | | ||| |||||||||||||| | | | | | |||||| Sbjct 4424123 CAGCAGCGTCTCATCTTTGCCGGGAAGCAACTCGAAGACGGCCGCACTTTGGCCGATTAC 4424182 Query 24168 AACATTCAAAAAGAATCTAC 24187 ||||||||||||||||| || Sbjct 4424183 AACATTCAAAAAGAATCCAC 4424202 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | || || || || || || || || |||| ||| | || || ||| | Sbjct 3889555 AATGCAGATCTTCGTCAAGACGTTGACCGGGAAGACGATCACCCTGGAGGTGGAGAGCTC 3889614 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 |||||| ||||| | || || ||||| |||||||| || || ||||| || || Sbjct 3889615 CGACACGATCGACAACGTGAAGGCCAAGATCCAGGACAAAGAGGGGATTCCTCCGGACCA 3889674 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||||| || || | || ||||||||| ||||| |||| | | | | |||||| || Sbjct 3889675 GCAGAGGCTCATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGGACTCTTGCCGATTACAA 3889734 Query 24170 CATTCAAAAAGAATCTAC 24187 ||||||||| || || || Sbjct 3889735 CATTCAAAAGGAGTCCAC 3889752 Score = 82.4 bits (90), Expect = 7e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| |||| || || | ||||| ||||||| ||| | | Sbjct 5506612 ATGCAGATCTTCGTGAAAACCCTAACCGGCAAGACCATTACTCTCGAAGTTGAGAGCTCC 5506671 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| ||||| | ||||| ||||| ||||| ||||| || || || || || Sbjct 5506672 GACACGATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGGATTCCGCCGGACCAG 5506731 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| ||||| | || || ||||||||||| || | | | | | | ||||| || Sbjct 5506732 CAGAGGCTGATCTTCGCAGGAAAGCAACTCGAGGACGGCCGCACCTTGGCTGATTACAAT 5506791 Query 24171 ATTCAAAAAGAATCTACAATTCA 24193 || || || ||||| || |||| Sbjct 5506792 ATCCAGAAGGAATCAACTCTTCA 5506814 >seq1288 Length=1199740 Score = 96.9 bits (106), Expect = 3e-15 Identities = 110/144 (76%), Gaps = 3/144 (2%) Strand=Plus/Minus Query 24084 GACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAA 24143 ||||| |||||||| ||||| ||||| ||||||||||||| | || || ||| | ||| Sbjct 1162949 GACAAGGAAGGCATTCCTCCGGATCAGCAGAGACTGATTTTTGCTGGTAAACAATTGGAA 1162890 Query 24144 GATGACAGAAACGTCAGC-GATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 |||| ||||| || || ||||||||||||||||| || || || |||| || || | Sbjct 1162889 GATGGCAGAA-CGCTTGCAGATTATAACATTCAAAAGGAGTCGACGCTTCACTTGGTCCT 1162831 Query 24203 AAGATTGAGAGGAGG-ACTATAAT 24225 || | || ||||| ||||| || Sbjct 1162830 GAGGCTCAGGGGAGGAACTATGAT 1162807 >seq2 Length=53008150 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| | ||||| || | || || | || || || | Sbjct 27084271 ATGCAGATTTTTGTGAAAACCCTGACTGGTAAGACTATAACTTTGGAGGTTGAAAGCTCT 27084212 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| ||||| | ||||| ||||| ||||| || ||||| || || |||||| Sbjct 27084211 GACACGATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCACCTGATCAA 27084152 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||||||||||| | || ||||| || ||||||| | | | | | || || ||| Sbjct 27084151 CAGAGACTGATTTTTGCTGGAAAGCAGCTAGAAGATGGCCGTACCCTTGCTGACTACAAC 27084092 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200 ||||| || |||||||| |||| || ||| Sbjct 27084091 ATTCAGAAGGAATCTACCCTTCACTTGGTG 27084062 Score = 82.4 bits (90), Expect = 7e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | |||||||| || | |||||||| | || ||| | || || || | | Sbjct 27084727 ATGCAGATCTTTGTAAAGACCCTCACTGGAAAGACTATCACCCTTGAGGTGGAAAGCTCC 27084668 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | |||||| || ||| ||||| ||||| || || || || || Sbjct 27084667 GACACCATTGACAATGTCAAAGCCAAAATTCAGGACAAGGAAGGGATCCCACCAGACCAG 27084608 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || || || |||| | ||||| ||||| || |||| | | | | | ||| |||||| Sbjct 27084607 CAAAGGCTTATTTTTGCTGGCAAACAACTTGAGGATGGCCGCACCCTTGCCGACTATAAC 27084548 Query 24171 ATTCAAAAAGAATCTACA 24188 ||||| || || || ||| Sbjct 27084547 ATTCAGAAGGAGTCCACA 27084530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429928119273120