Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20maxima_20[genbank_20GCA_5F002006925.1_202017-03-07] 1,504 sequences; 345,757,338 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq7 221 1e-52 seq1 176 5e-39 seq8 93.3 5e-14 seq2 91.5 2e-13 seq4 89.7 6e-13 seq6 86.0 7e-12 seq5 86.0 7e-12 seq3 86.0 7e-12 >seq7 Length=22269817 Score = 221 bits (244), Expect = 1e-52 Identities = 595/900 (66%), Gaps = 19/900 (2%) Strand=Plus/Plus Query 92790 CATAACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTC 92849 ||||||| | ||||| |||||||||||| | |||||||||||||| ||||| |||| Sbjct 8164851 CATAACAGAAGCCTTTTGATATTCCCCAACTCTCTTTTCAAAGAAATTAGTCTTCCCTTG 8164910 Query 92850 CAAAGATATCGAATTCA--CTAGTGATTGGATTCTTGGCGTTATAATACTTTTC--ACCG 92905 | || ||| | || | | | |||||| | || ||| | ||| Sbjct 8164911 GAGCGAGATCAGCTCCATCCAATCAAAAGGATTCCCCACACCGTACAGCTTCCCGTACCC 8164970 Query 92906 ATCAACTCGTACAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAA 92965 | | | | ||| |||||||| || ||||| |||||||||||| |||||| || | | Sbjct 8164971 A--AGCGCACCCAACAATCTATCCGCGACAAACTCTATGTACTGACTCATCAATTCTCCA 8165028 Query 92966 TTCATTCCTAGAAGACGTACA-GGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAAC 93024 ||||| || | | ||| || || || || ||| || || ||| |||| || | || Sbjct 8165029 TTCATCCCCACCA-ACGCGCACGGCAGCGCATCGCACACAAACTCTCTCTCTATCTCCAC 8165087 Query 93025 GGCTTCTTTCAAGATTTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAAT-TGT 93083 || || |||| | | | ||||| || | | | || || | |||| ||| Sbjct 8165088 CGCCTCCTTCACTAACGCCTTCACTCT-CTCCTCGCTTAGCTTCGTCCTCAATAAACTGT 8165146 Query 93084 ACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGA 93143 ||| | |||||| || ||| || | ||| || ||||| || |||||||| || || Sbjct 8165147 ACAACAGGCACGCGAAATCGCAGTGGAGACCCTCATCTCGAGAGATCAACTCGTTTGAGA 8165206 Query 93144 ATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAG 93203 ||||||| || || | | || || || |||||||||||||| | |||||| || | Sbjct 8165207 ATGTTAATCCCGGCATTAACCCGCGCTTTTTGAGCCAAAATATCGCGCAAAAACTCCCTG 8165266 Query 93204 aaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAAT 93263 | || || || || |||||| ||||| || | | | || || ||| | | || Sbjct 8165267 AGAAGAAAATCCCCTCCACGCAAGCAAACGCGATTAATCTCTCCGCGAAAGTCTCCGAG- 8165325 Query 93264 TACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGA 93323 | | |||||| ||||| ||||| |||||| || | || || | || |||| Sbjct 8165326 --CCGTCGATCCAATTTAACGCCCACGTGGCTTTCTTTGCGACGCAGGGAACCGTCTCGA 8165383 Query 93324 TAGCGTTAAATAG---GTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACA 93380 | |||| ||| || || | | ||||| || ||| ||||| || || | | || Sbjct 8165384 TGGCGTGAAAGAGACGGTTCTTT---TCGTCGGAGTCTTTGATGTAAGTTTCTAGAAGCA 8165440 Query 93381 GAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAG 93440 | || |||||||| || |||| ||||| || || |||||||| |||||||| | | Sbjct 8165441 GCGAGTACATTTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCACGCG 8165500 Query 93441 CTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCAT 93500 | || | || ||| || || || || | |||| || || ||| || || | Sbjct 8165501 CCTCGGCGACCTGGACCTCCGTCATGAACCTTCCGGCGAGGTTCTCGAGGACGATGCCGT 8165560 Query 93501 CGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCT 93560 |||| ||||| || || || | | ||| | | || || ||||| ||| | | || Sbjct 8165561 CGGAGGCTGCGAAGAAGGCGAGCACGTGCGTGACGAAGTGCTTCTCGTCAGCGGTTAGGG 8165620 Query 93561 TATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTT 93620 ||||| | | ||||||| |||||||| ||||| || | ||||||||||| |||| Sbjct 8165621 CCTCCCAGTGGCGGAGATCTTGCGAAAGATCAACTTCCTCAGCGGTCCAAAACGACGCTT 8165680 Query 93621 CTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGAT 93680 | ||||| |||||||| ||||| || | | | || ||||| || || ||| ||| |||| Sbjct 8165681 CGGCTTTCTTGTACATTTCCCAAATTTGTGGGTACTGAATCGGGAACATGCAAAATCGAT 8165740 >seq1 Length=32082701 Score = 176 bits (194), Expect = 5e-39 Identities = 596/913 (65%), Gaps = 19/913 (2%) Strand=Plus/Minus Query 92803 TTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGAA 92862 |||||||||||||| ||| | || ||||||||||| ||||| |||| || || ||| | Sbjct 31016972 TTTTGGTATTCCCCGACTCTCTTCTCAAAGAAATTCGTCTTCCCTTGCAGCGAAATCAAC 31016913 Query 92863 TTCA--CTAGTGATTGGATTCTTGGCGTTATAATACTTTTCACCGATCAACTCGTACAAT 92920 | || | | | |||||| | || || ||| | | | | | ||| Sbjct 31016912 TCCATCCAATCAAACGGATTCGTCACGCCGTACACCTTCCCGCACCCGAGCGCACCCAAC 31016853 Query 92921 AATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAG-AAG 92979 || ||||| || ||||| |||||||||||| |||||| | | ||||| || | || Sbjct 31016852 AACCTATCTGCCACAAACTCTATGTACTGACTCATCAACGCCCCGTTCATCCCCACCAAT 31016793 Query 92980 ACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGAT 93039 || || || || |||||| || ||| || |||| || | || || || |||| || Sbjct 31016792 GCGCAC-GGCAGCGCGTCGCACACGAACTCCCTCTCTATCTCCACCGCCTCCTTCACTAT 31016734 Query 93040 TTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAAT--TGTACATTAAGCACGCA 93097 | | || | || | | | ||| || | || | |||||| |||||||| Sbjct 31016733 CCCCTTCACGCG-CTCCTCGCTTAATTT-GTTCCTCAGCAAGCTGTACAACAAGCACGCG 31016676 Query 93098 AAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGT 93157 || ||| || | ||||| ||||| || || | ||| || ||| |||| || || Sbjct 31016675 AAATCGCAGTGGAGTCCTTCATCTCGCGAGATTAGCTCGTTCGAGAAGGTTAGGCCCGGC 31016616 Query 93158 AACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA-AAACTACCAGaaaaaaaTATACC 93216 | | || || || || | ||||||||| | ||| ||||| || || || ||||| || Sbjct 31016615 ATTAACCCGCGCTTTTTCAACCAAAATATCGC-GCAGAAACTGCCCGAGAAGAATATCCC 31016557 Query 93217 TTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCA 93276 ||||||| ||||| || | | | || || || | | || | | |||||| Sbjct 31016556 TTCCACGCAAGCAAACGCTATCAGTCTCTCCGCGAATGTCTCCGAG---CCGTCGATCCA 31016500 Query 93277 TTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAAT-A 93335 |||| ||||||||||| ||||| || || || | ||||| | ||| |||| | Sbjct 31016499 ATTTAGGGCCCAATCGGCCTTTTTGGCAACGCACGGCACAGTTTCAAAGGCGCGAAATAA 31016440 Query 93336 GGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAG 93395 | ||| ||||| || | | |||||| || || | | || || |||||||| | Sbjct 31016439 GCGGCTCT-TTTCGTCGGAGTTTTTTATGTACGTTTCTAGAAGGAGCGAGTACATTTCGG 31016381 Query 93396 AATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCA 93455 | |||| ||||| || || |||||||| |||||||| | || || | || || | Sbjct 31016380 AGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCACGCGCCTCGGAGACTTGGA 31016321 Query 93456 CTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaa 93515 ||||| || || | |||| ||||| ||| || ||||| || || || || | Sbjct 31016320 TTTCTTTCATGAACCTGGCGGCGAGGTTTTCGAGGACGATTCCATCCGAGGCGGCGAAGA 31016261 Query 93516 aaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAAT--CGGA 93573 | || | | ||| | || || |||||||| || | | || ||||| | |||| Sbjct 31016260 AGGCGAGCACGTGCGTGATGAAGTGTTTCTCGTCGGCCGTTAGGGATTCCCACTGGCGGA 31016201 Query 93574 TAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTA 93633 | || | || || || || || || | |||||||| || ||||| ||||| ||||| Sbjct 31016200 T--GTCCTGCGACAGGTCAACCTCCTCCGCCGTCCAAAATGAAGCTTCGGCTTTCTTGTA 31016143 Query 93634 CATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTT 93693 ||| ||||| || || | || || |||||||| ||| || || | ||||| | Sbjct 31016142 CATTTCCCAGATTTCCGGGTACTGGATTGGAAACATGCAGAATCGGTCTGGGTTCGGGGT 31016083 Query 93694 TAGTAACGGCTCT 93706 ||| | ||||||| Sbjct 31016082 TAGCAGCGGCTCT 31016070 >seq8 Length=21028080 Score = 93.3 bits (102), Expect = 5e-14 Identities = 86/108 (80%), Gaps = 6/108 (6%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || | Sbjct 16070628 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGAGGG 16070685 Query 126322 CGTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTT 126369 ||||||||| || ||||| ||||||| | ||||| || ||||| || Sbjct 16070686 CGTGGGTTCAAATCCCACTTCTGACAATTGTTTATTTGATTTTTTTTT 16070733 >seq2 Length=53008150 Score = 91.5 bits (100), Expect = 2e-13 Identities = 80/97 (82%), Gaps = 7/97 (7%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || | Sbjct 7737911 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGGG 7737968 Query 126322 CGTGGGTTCGAACCCCACACCTGAC-AAATTATTATT 126357 ||||||||| || ||||| ||||| ||||||| ||| Sbjct 7737969 CGTGGGTTCAAATCCCACTTCTGACAAAATTATAATT 7738005 Score = 86.0 bits (94), Expect = 7e-12 Identities = 81/102 (79%), Gaps = 5/102 (5%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 49394829 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 49394886 Query 126328 TTCGAACCCCACACCTGACAAATTAT---TATTGGAATTTTT 126366 ||| || |||||| ||| || | ||| |||| ||||||| Sbjct 49394887 TTCAAATCCCACAGCTGTCAGACTATCAATATTATAATTTTT 49394928 Score = 86.0 bits (94), Expect = 7e-12 Identities = 72/87 (83%), Gaps = 6/87 (7%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || Sbjct 51650094 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGG 51650151 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 51650152 GCGTGGGTTCAAATCCCACTTCTGACA 51650178 >seq4 Length=29346085 Score = 89.7 bits (98), Expect = 6e-13 Identities = 75/91 (82%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGA 126320 ||||||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | Sbjct 3144090 ACAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGAAAGAGG 3144149 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATT 126351 |||||||||| || ||||| |||||||||| Sbjct 3144150 GCGTGGGTTCAAATCCCACTTCTGACAAATT 3144180 >seq6 Length=23636167 Score = 86.0 bits (94), Expect = 7e-12 Identities = 70/84 (83%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 20231715 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 20231658 Query 126328 TTCGAACCCCACACCTGACAAATT 126351 ||| || |||||| ||| |||||| Sbjct 20231657 TTCAAATCCCACAGCTGTCAAATT 20231634 >seq5 Length=49531769 Score = 86.0 bits (94), Expect = 7e-12 Identities = 71/86 (83%), Gaps = 2/86 (2%) Strand=Plus/Plus Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCG 126323 ||| ||| |||||||||||||||||||||||||||||| | |||||| || | ||| Sbjct 3412118 CAGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCG 3412175 Query 126324 TGGGTTCGAACCCCACACCTGACAAA 126349 ||||||| || |||||| ||| |||| Sbjct 3412176 TGGGTTCAAATCCCACAGCTGTCAAA 3412201 >seq3 Length=30666748 Score = 86.0 bits (94), Expect = 7e-12 Identities = 81/102 (79%), Gaps = 5/102 (5%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 29832225 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 29832168 Query 126328 TTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTT 126369 ||| || |||||| ||| |||| | | || ||||||| || Sbjct 29832167 TTCAAATCCCACAGCTGTCAAAATTTAAT---AATTTTTTTT 29832129 Score = 82.4 bits (90), Expect = 9e-11 Identities = 71/87 (82%), Gaps = 6/87 (7%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGA 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| |||| | | Sbjct 21163727 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGAAAGAGG 21163784 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 21163785 GCGTGGGTTCAAATCCCACTTCTGACA 21163811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556850331016960