Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20maxima_20[genbank_20GCA_5F002006925.1_202017-03-07] 1,504 sequences; 345,757,338 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq2 93.3 3e-14 >seq2 Length=53008150 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | || || | || || || ||||||||| | || |||| | | Sbjct 27088124 ATGCAAATCTTTGTAAAGACCCTCACTGGAAAGACCATTACCCTTGAGGTGGAAAGCTCG 27088065 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || | || |||||| ||||| || || | || | |||| Sbjct 27088064 GACACCATTGACAATGTCAAAGCCAAAATTCAGGATAAGGAAGGGATCCCACCAGACCAG 27088005 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || || || |||||||||||||||||||| || ||| | || | || || ||||| Sbjct 27088004 CAAAGGCTCATCTTTGCTGGCAAACAACTTGAGGATGGACGCACACTTGCAGACTACAAC 27087945 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGT 22049 || ||||||||||| || |||||| ||||| | ||| Sbjct 27087944 ATCCAGAAGGAATCAACCCTTCATTTGGTACTTCGT 27087909 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| |||| || | || ||||| ||||||||| | ||| || | Sbjct 27084043 ATGCAAATCTTTGTTAAGACTCTTACTGGCAAGACCATTACCTTAGAAGTTGAGAGTTCG 27083984 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGT---ACCTGTAAAC 21950 || || | | | || |||| || ||| || || || || | ||||| || Sbjct 27083983 GATACTATTGACAATGTTAAAGCTAAGATTCAAGACAAGGAAGGCATCCCACCTG---AC 27083927 Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 || ||||| |||||||||||||| || || || |||||| || || | ||||| ||| Sbjct 27083926 CAGCAGAGGCTTATCTTTGCTGGTAAGCAGCTTGAAGATGGAAGGACCCTCGCCGACTAC 27083867 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 |||||||||||||| || ||||| || |||| | || | || ||||| Sbjct 27083866 AATATTCAGAAGGAGTCCACTCTACACTTGGTCCTTCGCCTTCGTGGAGG 27083817 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 21927 GATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAA 21986 ||||| ||||| | || | |||| ||||| | ||||||||||| |||||||| || Sbjct 27126985 GATAAGGAGGGGATTCCCCCAGACCAGCAGAGGTTGATCTTTGCTGGAAAACAACTTGAG 27126926 Query 21987 GATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCATATGGTATTA 22046 ||| || ||| | ||||||||||| || |||||||| || ||||| ||| | || | Sbjct 27126925 GATGGAAGGACTCTTGCCGATTACAACATCCAGAAGGAGTCCACTCTGCATCTTGTGCTC 27126866 Query 22047 CGTTTACGAGGAGG 22060 ||| | || ||||| Sbjct 27126865 CGTCTCCGTGGAGG 27126852 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 |||||| |||||| | ||||| | || || ||||| || ||| ||||| || | | Sbjct 27084500 AATGCAGATATTTGTGAAAACCCTGACTGGTAAAACTATCACCTTGGAAGTTGAGAGCTC 27084441 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | | || | || |||||| || || || || | || | |||| Sbjct 27084440 CGACACCATTGACAATGTCAAAGCCAAAATTCAGGACAAGGAAGGGATCCCACCAGACCA 27084381 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 || || || |||||||| || ||||||||||| ||| | || | || || ||||| Sbjct 27084380 GCAAAGGCTCATCTTTGCCGGTAAACAACTAGAGGATGGACGCACACTTGCAGACTACAA 27084321 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGT 22042 || ||||||||||| || |||||| |||| Sbjct 27084320 CATCCAGAAGGAATCAACCCTTCATTTGGT 27084291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358118235572416