Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20maxima_20[genbank_20GCA_5F002006925.1_202017-03-07] 1,504 sequences; 345,757,338 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq1 197 3e-45 seq7 174 3e-38 >seq1 Length=32082701 Score = 197 bits (218), Expect = 3e-45 Identities = 446/662 (67%), Gaps = 10/662 (2%) Strand=Plus/Plus Query 42285 ATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGC-GCAGTTCTCCAACTGGACCGC 42343 ||| || ||| ||| |||||| ||||||||||| || | || | || ||||| || Sbjct 31016116 ATCCAGTACCCGGAAATCTGGGAAATGTACAAGAAAGCCGAAGCT-TCATTTTGGACGGC 31016174 Query 42344 CGAGGAGATTGACCTGGCCAAGGACA-CGGCCGGCTGGGAGTCACTGTCTGAGAACGAAA 42402 |||||| |||||||| | |||||| | ||| | ||||| || || | | |||| | Sbjct 31016175 GGAGGAGGTTGACCTGTCGCAGGACATCCGCCAG-TGGGAATCCCTAACGGCCGACGAGA 31016233 Query 42403 AGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGA 42462 | ||| ||| || | || ||||||||||||||||| || || || ||| || | Sbjct 31016234 AACACTTCATCACGCACGTGCTCGCCTTCTTCGCCGCCTCGGATGGAATCGTCCTCGAAA 31016293 Query 42463 ACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCT 42522 |||| ||| |||||||||||||||| | || || |||||||| ||||||||||| Sbjct 31016294 ACCTCGCCGCCAGGTTCATGAAAGAAATCCAAGTCTCCGAGGCGCGTGCCTTCTACGGCT 31016353 Query 42523 TCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACA 42582 |||| || ||||| |||||| | ||||| || ||||| | || || | ||||||| Sbjct 31016354 TCCAAATCGCCATCGAGAACATCCACTCCGAAATGTACTCGCTCCTTCTAGAAACGTACA 31016413 Query 42583 TCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCA 42642 | | ||| ||| | | | | || ||| | || || |||| ||| | Sbjct 31016414 TAAAAAACTCCGACGAAAAGAGCCGCTTATTTCGCGCCTTTGAAACTGTGCCGTGCGTTG 31016473 Query 42643 AGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGA 42702 || ||||| || ||||| || || |||||||| | | || | || |||| |||| Sbjct 31016474 CCAAAAAGGCCGATTGGGCCCTAAATTGGATCGA-CGGCTCG--GAGACATTCGCGGAGA 31016530 Query 42703 GGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCT 42762 | ||| |||| ||| | ||| || || || |||||||||||| ||| | | || | Sbjct 31016531 GACTGATAGCGTTTGCTTGCGTGGAAGGGATATTCTTCTCGGGCAGTTTCTGCGCGATAT 31016590 Query 42763 TCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCA 42822 | ||| | || || | || ||||| || || |||||||||||||| || ||| Sbjct 31016591 TTTGGTTGAAAAAGCGCGGGTTAATGCCGGGCCTAACCTTCTCGAACGAGCTAATCTCGC 31016650 Query 42823 GGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACA 42882 | || || || || || | || || || || | |||| | ||| || ||| ||| Sbjct 31016651 GAGATGAAGGACTCCACTGCGATTTCGCGTG---CTTGTTGTACAGCTTGCTGAGGAACA 31016707 Query 42883 AGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGT 42942 | ||||||| || || || | | |||||| |||||||| |||| ||||| Sbjct 31016708 AATTAAGCGAGGAGCGCGTGAAGGGGATAGTGAAGGAGGCGGTGGAGATAGAGAGGGAGT 31016767 Query 42943 TC 42944 || Sbjct 31016768 TC 31016769 >seq7 Length=22269817 Score = 174 bits (192), Expect = 3e-38 Identities = 357/523 (68%), Gaps = 7/523 (1%) Strand=Plus/Minus Query 42336 TGGACCGCCGAGGAGATTGACCTGGC-CAAGGACACGGCCGGCTGGGAGTCACTGTCTGA 42394 |||||||| ||||| |||| || | |||| | | ||| ||||||| | || | | Sbjct 8165669 TGGACCGCTGAGGAAGTTGATCTTTCGCAAGATCTCCGCCA-CTGGGAGGCCCTAACCGC 8165611 Query 42395 GAACGAAAAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGT 42454 |||| ||| ||| ||| || | || ||||||||||| ||||| |||||||| || Sbjct 8165610 TGACGAGAAGCACTTCGTCACGCACGTGCTCGCCTTCTTCGCAGCCTCCGACGGCATCGT 8165551 Query 42455 CAATGAGAACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTT 42514 | |||||||| ||| |||||||||| ||||| ||| | |||||||| ||| Sbjct 8165550 CCTCGAGAACCTCGCCGGAAGGTTCATGACGGAGGTCCAGGTCGCCGAGGCGCGTGCCTT 8165491 Query 42515 CTACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAA 42574 |||||||||||| || ||||| |||||| | ||||| || ||||| | || || | Sbjct 8165490 CTACGGCTTCCAAATCGCCATCGAGAACATCCACTCCGAAATGTACTCGCTGCTTCTAGA 8165431 Query 42575 CACGTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCC 42634 || |||||| || ||| ||| ||| | || || | ||||| |||||| | || Sbjct 8165430 AACTTACATCAAAGACTCCGACGAAAAGAACCGTCTCTTTCACGCCATCGAGACGGTTCC 8165371 Query 42635 CTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTT 42694 |||| || ||||| || |||||| | || |||||||| | | || | || || Sbjct 8165370 CTGCGTCGCAAAGAAAGCCACGTGGGCGTTAAATTGGATCGA-CGGCTCG--GAGACTTT 8165314 Query 42695 CGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTC-GGGCGCCTTCG 42753 || ||||| | | || ||| | ||| ||||| || |||||||| ||| | || | Sbjct 8165313 CGCGGAGAGATTAATCGCGTTTGCTTGCGTGGAGGGGATTTTCTTCTCAGGGAGTTTTTG 8165254 Query 42754 CCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAAC 42813 | | || || |||||||| || | || ||||| ||| | || ||||| ||||| Sbjct 8165253 -CGCGATATTTTGGCTCAAAAAGCGCGGGTTAATGCCGGGATTAACATTCTCAAACGAGT 8165195 Query 42814 TCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCT 42856 | ||| | || ||||| || || | || || || ||||| Sbjct 8165194 TGATCTCTCGAGATGAGGGTCTCCACTGCGATTTCGCGTGCCT 8165152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944321446423040