Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20maxima_20[genbank_20GCA_5F002006925.1_202017-03-07] 1,504 sequences; 345,757,338 total letters Query= NC_009234.1 Length=35741 Score E Sequences producing significant alignments: (Bits) Value seq1504 239 1e-58 >seq1504 Length=2444 Score = 239 bits (264), Expect = 1e-58 Identities = 787/1197 (66%), Gaps = 36/1197 (3%) Strand=Plus/Plus Query 23328 ACGCGCGCCGGGAAATCGGCGAGGAAGCGGTCGGTGATGCGCTGGCGCAGCACCAGATTT 23387 ||||| | | |||||| | ||| | ||||| ||||||||||||||||||| ||| ||| Sbjct 1233 ACGCGGGTGGTGAAATCCACCAGGTAACGGTCAGTGATGCGCTGGCGCAGCATCAGGTTT 1292 Query 23388 TCGAGAGGCGGAACCGGCGTGTAGTCATAATCGATGTACGCCTTGCCGGACGCGAGAA-T 23446 || || ||||| || ||||| ||||| || ||||| | || |||| || | Sbjct 1293 TCCAGCGGCGGCACTGGCGTATAGTCGTAGTCGATCCAGAGTTTCCCGGCTTTCAGGGCT 1352 Query 23447 GTCG--GCCGTGTTCGGCTCCGGATCGATCCACGCGCT-ACCGCCGATCAGGTAGCCGTT 23503 ||| | ||| || | ||| ||||| || | ||||||||| |||||||| | Sbjct 1353 GTCTTTGTCGTTAACGCTGTC--ATCAATCCA-GCAATCACCGCCGATGAGGTAGCCCTG 1409 Query 23504 CGCGACCTGCTGCCGAAACCAGCCGTTGATGCTTTCCACGATGTCGCGCGCGAGCGACGG 23563 | ||||| | | | || ||| | ||| | || ||||| || |||||||| Sbjct 1410 ATTACCAGGCTGC-GCATTTTGGCGCGGATACCTTCGATAATATCGCGGGCCAGCGACGG 1468 Query 23564 ATTCAGCGGGCCGTCGACGACGGGCATCTGCGCTTCGGCGATCGAATCGGCGGCCACCTG 23623 || ||||| || || | ||| || | || || || | || || ||||| Sbjct 1469 GTTAAGCGGCATATCCACCGCCCACATATGGCCCTCTGCCATGGTGTCAGCCAGTACCTG 1528 Query 23624 AGCGGTGCGCGTGTAGTTCTCGAACGCGAACTTCGGAT-CGTC---CGAGCACGTGCGCT 23679 |||||||| |||||||| || ||| |||| ||||| | || | ||| ||| Sbjct 1529 CGCGGTGCGGGTGTAGTTTTCAAACTGGAACAGCGGATTCATCACTCAGGCA---GCGGG 1585 Query 23680 CGCCCCAGAACCGGAAGCCGT---TGCGGTTCACGAGCGTCGTCACTTCGTGCTCGTTCA 23736 |||||||| ||||| || | | | | ||| | || || || |||| || ||||| Sbjct 1586 AACCCCAGAAGCGGAAACCATCCTTCCTGATCAAG---GTGGTGACGTCGTTCTGGTTCA 1642 Query 23737 GGTAGCCCGCATCGGTCGCCGGGTCCTGCAAATCCCACGACACGTCGGCGCTGATGCCGG 23796 | || ||||| || ||||||||||||| |||||| |||| || || | ||||| Sbjct 1643 GCAGTCCGGCATCAGTTGCCGGGTCCTGCAGATCCCAGAACACATCCGCAGACAAGCCGG 1702 Query 23797 ACACGCCGTTCACGACGACATTCGAAATCGTCTTGTGCCAGCCGATGTCGTTGTCGATCT 23856 |||||||| ||| | || || || | || |||||||||||| | | | |||||| | Sbjct 1703 TTACGCCGTTGACGCC-ACGTTAGACAGGGTTTTGTGCCAGCCGGTTTGCTCGTCGATTT 1761 Query 23857 TC-GCGCGCAAGCCGGCGGCGATCGCCG-GCGCCGGGATGACGGCCGTCGAGTTCGTCGT 23914 | ||||||| ||| |||| || ||| | | | | ||| | | ||| Sbjct 1762 TTAGCGCGCA-GCCAAGGGCGCGGGCGTAGCGTAGCGGTCGCATCCGCCTGCAGCACCGT 1820 Query 23915 GTCGTCCCAGCCGAGCCAGTCCGGCCAGATCACCATGATTTCGCGTTGGCCGAACTGCCT 23974 ||| || | |||| |||||||| | ||| ||| || |||| ||| | Sbjct 1821 GTCAA---AGTTTATGAAGTCAGGCCAGATAATCATTCCTTCACGCTGGCTGAAGTTGTC 1877 Query 23975 GCGGTACGCGGCGGCTTCTTCCTTCGTCTTGCAGCCGGACGCCGACACATAGGCCATCGC 24034 |||||| | | ||| | || || || |||||| | || |||| ||| || | || Sbjct 1878 GCGGTAAGTGATCGCTCTTGCCACGGTTTTACAGCCGTAAGCTGACATATACGCAAAGGC 1937 Query 24035 GCGCAGCGACTGCGCGGTCGCCGCGAGCGCGGCCGCGACCGGCTGCGTATCGAGGCCGGG 24094 ||||| |||||| ||| ||| | | | || | ||||||||| | || || Sbjct 1938 CCGCAGGCTCTGCGCCA-CGCTCACAGCTCAGTGGATACGGCCTGCGTATCATGCCCCGG 1996 Query 24095 CGCGGCGA-GAATGCGCGGCTTCACGCCGAGCGCACCCTGCGCGGCGAGCAGCGCCTTGA 24153 | || ||| |||||||||| |||||||| ||| |||||||| || |||||||| | Sbjct 1997 CACGCCGAAGAATGCGCGGTTTCACGCC-AGCTGCGACTGCGCGGAAAGTAGCGCCTTCA 2055 Query 24154 TGCCCGTGTACTTGCCGTCCGGCGTCACGGTGCCGATGACGTTCGAGGTCGTCTCGTCGG 24213 |||| || | ||| ||||| | |||||| |||||| | || ||||| || || | Sbjct 2056 TGCCGGTTTTCTTACCGTCGGCAGTCACGCCGCCGATAATATTTGAGGTGGTTTCCGCTT 2115 Query 24214 CGTCCTTGCCTTCGGCGACGCGCACGACGACGGTCA-GCGGCTTCGTCTGCTTGCCGATC 24272 || | ||| | ||| |||||||| || ||||| | | | || | ||| | ||||| Sbjct 2116 CGGTTTCGCCCTGGGCAACGCGCACCACTACGGTGACGGGTTTTTGCCTGGTCTGCGATC 2175 Query 24273 GCGTCGAGCGTGCGGCGCAGCGTGCCTTTCTTGCCGGCCTTGCCGAGCGCGGCGACGACG 24332 ||||| || | |||| |||||| || || ||| || || ||| |||| | || Sbjct 2176 GCGTCCAGTGAGCGGGCCAGCGTACCGGACTCGCCCGCTTTACCGCTGGCGGTCAGTACA 2235 Query 24333 TTCGTCAGCAGCA-CGGGCGTATTGAGCGGAAACGCGCTCGCGTCAGCGTCGGCCGCCGT 24391 | || ||||| | | ||| |||||||||| ||| | || || || || | | || Sbjct 2236 TCGGTAAGCAGTACCAGGCTTATTGAGCGGGAACATGGAGGCATCGGCATCATCGCCGGT 2295 Query 24392 GCAGACGACGCCGAGCACGGCCGTCGACACTGAGCGAATCGGGCGGCCGCCTTCGTTGAT 24451 ||| || | ||| | | ||||| ||| | || | |||| ||| ||||| | Sbjct 2296 GCACACCATGCCCACAATCGCCGTGCTCACCGTCGTGATAGAGCGGGTGCCGTCGTTAAC 2355 Query 24452 TTCGATGAC-GCGTACGCCGTGGTGGTAATCCTGCGGCATGGTGTGCAGCTCCTGTT 24507 ||| | || ||| |||||||| ||| || |||| ||||| || | |||||||| Sbjct 2356 TTCTACAACAGCGCACGCCGTG--TGTAGTCTTGCGCCATGGAATGAATCTCCTGTT 2410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 114247559502144