Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20maxima_20[genbank_20GCA_5F002006925.1_202017-03-07] 1,504 sequences; 345,757,338 total letters Query= NC_009236.1 Length=36690 Score E Sequences producing significant alignments: (Bits) Value seq1504 248 2e-61 >seq1504 Length=2444 Score = 248 bits (274), Expect = 2e-61 Identities = 791/1198 (66%), Gaps = 38/1198 (3%) Strand=Plus/Plus Query 24332 ACGCGCGCCGGGAAATCGGCGAGGAAGCGGTCGGTGATGCGCTGGCGCAGCACCAGATTT 24391 ||||| | | |||||| | ||| | ||||| ||||||||||||||||||| ||| ||| Sbjct 1233 ACGCGGGTGGTGAAATCCACCAGGTAACGGTCAGTGATGCGCTGGCGCAGCATCAGGTTT 1292 Query 24392 TCGAGAGGCGGAACCGGCGTGTAGTCGTAATCGATGTACGCCTTGCCGGACGCGAGAA-T 24450 || || ||||| || ||||| |||||||| ||||| | || |||| || | Sbjct 1293 TCCAGCGGCGGCACTGGCGTATAGTCGTAGTCGATCCAGAGTTTCCCGGCTTTCAGGGCT 1352 Query 24451 GTCG--GCCGTGTTCGGCTCCGGATCGATCCACGCGCT-ACCGCCGATCAGGTAGCCGTT 24507 ||| | ||| || | ||| ||||| || | ||||||||| |||||||| | Sbjct 1353 GTCTTTGTCGTTAACGCTGTC--ATCAATCCA-GCAATCACCGCCGATGAGGTAGCCCTG 1409 Query 24508 CGCGACCTGCTGCCGAAACCAGCCGTTGATGCTTTCCACGATGTCGCGCGCGAGCGACGG 24567 | ||||| | | | || ||| | ||| | || ||||| || |||||||| Sbjct 1410 ATTACCAGGCTGC-GCATTTTGGCGCGGATACCTTCGATAATATCGCGGGCCAGCGACGG 1468 Query 24568 ATTCAGCGGGCCGTCGACGACGGGCATCTGCGCTTCGGCGATCGAATC-GCCGGCCACCT 24626 || ||||| || || | ||| || | || || || | || ||| | |||| Sbjct 1469 GTTAAGCGGCATATCCACCGCCCACATATGGCCCTCTGCCATGGTGTCAGCCAGT-ACCT 1527 Query 24627 GAGCGGTGCGCGTGTAGTTCTCGAACGCGAACTTCGGAT-CGTC---CGAGCACGTGCGC 24682 | |||||||| |||||||| || ||| |||| ||||| | || | ||| ||| Sbjct 1528 GCGCGGTGCGGGTGTAGTTTTCAAACTGGAACAGCGGATTCATCACTCAGGCA---GCGG 1584 Query 24683 TCGCCCCAGAACCGGAAGCCGT---TGCGGTTCACGAGCGTCGTCACTTCGTGCTCGTTC 24739 |||||||| ||||| || | | | | ||| | || || || |||| || |||| Sbjct 1585 GAACCCCAGAAGCGGAAACCATCCTTCCTGATCAAG---GTGGTGACGTCGTTCTGGTTC 1641 Query 24740 AGGTAGCCCGCATCGGTCGCCGGGTCCTGCAAATCCCACGACACGTCGGCGCTGATGCCG 24799 || || ||||| || ||||||||||||| |||||| |||| || || | |||| Sbjct 1642 AGCAGTCCGGCATCAGTTGCCGGGTCCTGCAGATCCCAGAACACATCCGCAGACAAGCCG 1701 Query 24800 GACACGCCGTTCACGACGACATTCGAAATCGTCTTGTGCCAGCCGATGTCGTTGTCGATC 24859 | |||||||| ||| | || || || | || |||||||||||| | | | |||||| Sbjct 1702 GTTACGCCGTTGACGCC-ACGTTAGACAGGGTTTTGTGCCAGCCGGTTTGCTCGTCGATT 1760 Query 24860 TTC-GCGCGCAAGCCGGCGGCGATCGCCG-GCGCCGGGATGACAGCCGTCGAGTTCGTCG 24917 || ||||||| ||| |||| || ||| | | | || ||| | | || Sbjct 1761 TTTAGCGCGCA-GCCAAGGGCGCGGGCGTAGCGTAGCGGTCGCATCCGCCTGCAGCACCG 1819 Query 24918 TGTCGTCCCAGCCGAGCCAGTCCGGCCAGATCACCATGATTTCGCGTTGGCCGAACTGCT 24977 |||| || | |||| |||||||| | ||| ||| || |||| ||| | | Sbjct 1820 TGTCAA---AGTTTATGAAGTCAGGCCAGATAATCATTCCTTCACGCTGGCTGAAGTTGT 1876 Query 24978 TGCGGTACGCGGCGGCTTCTTCCTTCGTTTTGCAGCCGGACGCCGACACATAGGCCATCG 25037 |||||| | | ||| | || ||||| |||||| | || |||| ||| || | | Sbjct 1877 CGCGGTAAGTGATCGCTCTTGCCACGGTTTTACAGCCGTAAGCTGACATATACGCAAAGG 1936 Query 25038 CGCGCAGCGACTGCGCGGTCGCCGCGAGCGCGGCCGCCACCGGCTGCGTATCGAGGCCGG 25097 | ||||| |||||| ||| ||| | | | || | ||||||||| | || | Sbjct 1937 CCCGCAGGCTCTGCGCCA-CGCTCACAGCTCAGTGGATACGGCCTGCGTATCATGCCCCG 1995 Query 25098 GCGCCGCGA-GAATGCGCGGCTTCACGCCGAGCGCACCCTGCGCGGCGAGCAGCGCCTTG 25156 || | ||| |||||||||| |||||||| ||| |||||||| || |||||||| Sbjct 1996 GCACGCCGAAGAATGCGCGGTTTCACGCC-AGCTGCGACTGCGCGGAAAGTAGCGCCTTC 2054 Query 25157 ATGCCCGTGTACTTGCCGTCCGGCGTCACGGTGCCGATGACGTTCGAGGTCGTCTCGTCG 25216 ||||| || | ||| ||||| | |||||| |||||| | || ||||| || || | Sbjct 2055 ATGCCGGTTTTCTTACCGTCGGCAGTCACGCCGCCGATAATATTTGAGGTGGTTTCCGCT 2114 Query 25217 GCGTCCTTGCCTTCGGCGACGCGCACGACGACGGTCA-GCGGCTTCGTCTGCTTGCCGAT 25275 || | ||| | ||| |||||||| || ||||| | | | || | ||| | |||| Sbjct 2115 TCGGTTTCGCCCTGGGCAACGCGCACCACTACGGTGACGGGTTTTTGCCTGGTCTGCGAT 2174 Query 25276 CGCGTCGAGCGTGCGGCGCAGCGTGCCTTTCTTGCCGGCCTTGCCGAGCGCCGCGACGAC 25335 |||||| || | |||| |||||| || || ||| || || ||| || | | || Sbjct 2175 CGCGTCCAGTGAGCGGGCCAGCGTACCGGACTCGCCCGCTTTACCGCTGGCGGTCAGTAC 2234 Query 25336 GTTCGTCAGCAGCA-CGGGCGTATTGAGCGGAAACGCGCTCGCGTCAGCGTCGGCCGCCG 25394 | || ||||| | | ||| |||||||||| ||| | || || || || | | | Sbjct 2235 ATCGGTAAGCAGTACCAGGCTTATTGAGCGGGAACATGGAGGCATCGGCATCATCGCCGG 2294 Query 25395 TGCAGACGACGCCGAGCACGGCCGTCGACACTGAGCGAATCGGGCGGCCGCCTTCGTTGA 25454 |||| || | ||| | | ||||| ||| | || | |||| ||| ||||| | Sbjct 2295 TGCACACCATGCCCACAATCGCCGTGCTCACCGTCGTGATAGAGCGGGTGCCGTCGTTAA 2354 Query 25455 TTTCGATGAC-GCGTACGCCGTGGTGGTAATCCTGCGGCATGGTGTGCAGCTCCTGTT 25511 ||| | || ||| |||||||| ||| || |||| ||||| || | |||||||| Sbjct 2355 CTTCTACAACAGCGCACGCCGTG--TGTAGTCTTGCGCCATGGAATGAATCTCCTGTT 2410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117284305264896