Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20maxima_20[genbank_20GCA_5F002006925.1_202017-03-07] 1,504 sequences; 345,757,338 total letters Query= NC_009382.1 Length=38760 Score E Sequences producing significant alignments: (Bits) Value seq1504 369 9e-98 >seq1504 Length=2444 Score = 369 bits (408), Expect = 9e-98 Identities = 728/1044 (70%), Gaps = 31/1044 (3%) Strand=Plus/Minus Query 18994 TTCCCGCTCGACACCCCCG-TCCTGCTGACCAACCCGCAGGCCTACATCGGCAAGGCCGG 19052 ||||||||| | | || | | ||||| ||| | | | || || ||| || || || Sbjct 2268 TTCCCGCTCAATAAGCCTGGTACTGCTTACCGATGTACTGACCGCCAGCGGTAAAGCGGG 2209 Query 19053 CGACAAAGGCACGCTCGCCCACACGCTCGACGCCATCACCGACCAGACCAA--CCCGCTC 19110 ||| || ||||| |||| | | || ||||| ||| | |||||| | || |||| || Sbjct 2208 CGAGTCCGGTACGCTGGCCCGCTCACTGGACGCGATCGCAGACCAGGCAAAAACCCG-TC 2150 Query 19111 ACGGTCGTGGTGCGCGTCGCCGGCGGTGCTTCCGAGGCCGAGACCACGTCCAACCTGATC 19170 || || ||||||||||| ||| || | |||| || || ||||| || || | ||| Sbjct 2149 ACCGTAGTGGTGCGCGTTGCCCAGGGCGAAACCGAAGCGGAAACCACCTCAAATATTATC 2090 Query 19171 GGCACCACCAACGCGGCCGGCCGGTACACCGGCATGAAGGCGCTGCTGACCGCCCGCAAC 19230 ||| | | || | ||| | | ||||||||||||||||| || |||| ||| Sbjct 2089 GGCGGCGTGACTGCCGACGGTAAGAAAACCGGCATGAAGGCGCTACTTTCCGC--GCAGT 2032 Query 19231 CGTTT-TGGCGTCGCGCCGCGCATCCT--GGCTGTGCCGGGGCTCGACAGCCTGCCAGTC 19287 || |||||| |||||||| || ||| |||||||||| || | | | | || Sbjct 2031 CGCAGCTGGCGTGAAACCGCGCATTCTTCGGC-GTGCCGGGGCATGATACGCAGGCCGTA 1973 Query 19288 GGGACCGAGCTGGTCACCATCGCGCAGAAGCTGCGCGCCTTCGCCTACCTGTCGGCGTAC 19347 || |||||| | | | | ||||||| ||||| ||||| || || |||| || ||| Sbjct 1972 TCCACTGAGCTG-TGAGCGTGGCGCAGAGCCTGCGGGCCTTTGCGTATATGTCAGCTTAC 1914 Query 19348 GGCTGCCAAACCAAGG-AAGAGGCCGTCGCCTACCGCAGCAACTTCGGCCAGCGCGAAGC 19406 ||||| ||||| || ||||| | || | |||||| ||||||| ||||||| |||| Sbjct 1913 GGCTGTAAAACCGTGGCAAGAG-CGATCACTTACCGCGACAACTTCAGCCAGCGTGAAGG 1855 Query 19407 GATGGTGATGTGGCCGGATTTCGTCGGCTGGGATACCG--CCGCCAATGCCGAGACCACC 19464 ||| | || ||||| || ||| | || || || | | || | || || | ||| Sbjct 1854 AATGATTATCTGGCCTGACTTCATAAACTTTGACACGGTGCTGC--AGGCGGATGCGACC 1797 Query 19465 CTGTGGGCCACGGCCCGCGCGGTCGGCTTGCGCGCCAAGA-TCGACAACGACACCGGCTG 19523 | || ||| ||||||| | |||| |||||| || | ||||| | | |||||||| Sbjct 1796 GC-TACGCTACG-CCCGCGCCCTTGGCT-GCGCGCTAAAAATCGACGAGCAAACCGGCTG 1740 Query 19524 GCACAAGACGCTTTCCAACGTGGCGGTGGGCGGCGTGACCGGTCTGTC-GCGCGACGTGT 19582 |||||| || || || ||||||||| | |||||| ||||| |||| ||| || |||| Sbjct 1739 GCACAAAACCCTGTCTAACGTGGCG-TCAACGGCGTAACCGGCTTGTCTGCG-GATGTGT 1682 Query 19583 TCTGGGACCTTCAGGACCCGGCGACCGACGCGGGCTACCTGAACGCCAACGAGGTGACCA 19642 ||||||| || ||||||||||| || || || || |||||| ||||| || |||| Sbjct 1681 TCTGGGATCTGCAGGACCCGGCAACTGATGCCGGACTGCTGAACCAGAACGACGTCACCA 1622 Query 19643 CGCTGGTTCACCGCG-ACGGCTACCGCTTCTGGGGCTCGCGCA-CGTGCAGTGCGGA-TC 19699 | || | ||| | | || | |||||||||||| || ||| | || |||| || || Sbjct 1621 C-CTTGATCAGGAAGGATGGTTTCCGCTTCTGGGGTTCCCGCTGCCTG-AGTGATGAATC 1564 Query 19700 CGCTGTTCGCCTTCGAGAACTACACCCGCACCGCGCAGGTGCTGGCCGACACCATGGCGG 19759 |||||||| || || ||||||||||||||||||||||| ||||| ||||||||||| | Sbjct 1563 CGCTGTTCCAGTTTGAAAACTACACCCGCACCGCGCAGGTACTGGCTGACACCATGGCAG 1504 Query 19760 AAGCACACATGTGGGCGAACGACCTACCGATGACGCCCACCCTCGTGCGCGATCTGCTGG 19819 | | || ||||||||| || | ||| | | || | || | |||||| | | | Sbjct 1503 AGGGCCATATGTGGGCGGTGGATATGCCGCTTAACCCGTCGCTGGCCCGCGATATTATCG 1444 Query 19820 AGGGCATCAATGCCAAGTTGCGCATGCTGACCCGCAACGGATACCTGCTGGGCGGCGCCG 19879 | || ||| ||||| |||||| ||| || || ||||| | ||||| | Sbjct 1443 AAGGTATCCGCGCCAAAATGCGCAGCCTGGTAATCAG-GGCTACCTCATCGGCGGTGATT 1385 Query 19880 CGTGGTTCGACGCGGACGCCAACAGCAAGGACA-CGCTGAAGGCCGGGCAACTCGCCATC 19938 ||| | || | || ||| ||| |||| | ||||| |||||| ||||| ||| Sbjct 1384 GCTGGATTGATGACAGCGTTAACGACAAAGACAGCCCTGAAAGCCGGGAAACTCTGGATC 1325 Query 19939 GACTACGACTACACGCCCGTCCCACCTCTGGAGAACCTCACGTTCCGCCAGCGCATCACC 19998 ||||||||||| ||||| || || || ||||| ||||| | | | |||||||||||||| Sbjct 1324 GACTACGACTATACGCCAGTGCCGCCGCTGGAAAACCTGATGCTGCGCCAGCGCATCACT 1265 Query 19999 GACCGCTACCTGATGCAGTTCGCC 20022 ||||| |||||| || | ||| || Sbjct 1264 GACCGTTACCTGGTGGATTTCACC 1241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 123908186960256