Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20maxima_20[genbank_20GCA_5F002006925.1_202017-03-07] 1,504 sequences; 345,757,338 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq6 105 5e-18 seq5 96.9 3e-15 >seq6 Length=23636167 Score = 105 bits (116), Expect = 5e-18 Identities = 165/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || ||||| |||| |||||||||||| || ||||||||||||||||||||| | Sbjct 4424461 ACCGCCCCTCAGACGCAACACCAGATGAAGAGTCGACTCCTTCTGAATGTTGTAATCCG- 4424403 Query 33960 CAATTGTCGCT-CGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018 ||| ||| | | || |||| ||||| || ||||| ||||||||||||||||| | Sbjct 4424402 CAAGCGTCCTTCCATCCTCCAGCTGCTTCCCAGCAAAGATCAGGCGCTGCTGATCAGGTG 4424343 Query 34019 GCACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGAT-TCG 34077 | | | || |||||| |||||| ||| | | | | |||| || | ||| Sbjct 4424342 GTATCCCTTCCTTGTCCTGGATTTTTGCCTTGACGTTGTCAATGGTGTCAG-AGCTCTCG 4424284 Query 34078 CATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128 ||| | || || || ||||| || || ||||| || ||||| |||||| Sbjct 4424283 ACTTCCAGAGTGATCGTCTTTCCCGTCAGGGTTTTGACGAAGATCTGCATT 4424233 Score = 100 bits (110), Expect = 2e-16 Identities = 157/222 (71%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 |||| ||||| || || ||||| ||||||||| ||||||||||| ||||| || Sbjct 4416571 AGCCTGAGCACGAGGTGGAGCGTTGACTCCTTCTGGATGTTGTAATCGGCCAAGGTGCGG 4416512 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 | || || | |||||| |||||||| ||||| |||||||||||| || | | ||| Sbjct 4416511 CCATCTTCGAGTTGCTTTCCGGCAAAGATCAGACGCTGCTGATCCGGAGGGATCCCCTCC 4416452 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGAT-TCGCATTCGACCGT 34088 |||||| || || ||| | | | | |||| || | || ||||| || Sbjct 4416451 TTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCAG-AGCTCTCCACTTCGAGAGT 4416393 Query 34089 TATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTT 34130 || ||||| |||||||| |||||||| ||||| ||||| || Sbjct 4416392 GATCGTTTTGCCGGTTAGGGTTTTCACGAAGATCTGCATATT 4416351 Score = 96.9 bits (106), Expect = 3e-15 Identities = 156/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 |||| ||||| || || ||||| ||||||||| ||||||||||| ||||| || Sbjct 4366034 AGCCTGAGCACGAGGTGGAGCGTTGACTCCTTCTGGATGTTGTAATCGGCCAAGGTGCGG 4365975 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 | || || | |||||| ||||| || ||||| |||||||||||| || | | ||| Sbjct 4365974 CCATCTTCGAGTTGCTTTCCGGCGAAGATCAGACGCTGCTGATCCGGAGGGATCCCCTCC 4365915 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGAT-TCGCATTCGACCGT 34088 |||||| || || ||| | | | | |||| || | || ||||| || Sbjct 4365914 TTGTCCTGGATCTTGGCCTTGACGTTGTCGATTGTGTCAG-AGCTCTCCACTTCGAGAGT 4365856 Query 34089 TATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTT 34130 || ||||| |||||||| |||||||| ||||| ||||| || Sbjct 4365855 GATCGTTTTGCCGGTTAGGGTTTTCACGAAGATCTGCATATT 4365814 >seq5 Length=49531769 Score = 96.9 bits (106), Expect = 3e-15 Identities = 154/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 ||||| |||||||| || || || ||||||||| || ||||| || ||||| |||| Sbjct 45288713 AGCCGAAGCACCAGGTGCAGAGTCGACTCCTTCTGGATATTGTAGTCGGCCAAGGTTCGC 45288654 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| || | ||||||||||| || || ||||||||||| ||| || | || ||| Sbjct 45288653 CCGTCTTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGTGGGATGCCCTCC 45288594 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCATTCGACCGTT 34089 |||||| || || ||| | | | | || | || || || | |||| Sbjct 45288593 TTGTCCTGGATCTTCGCCTTGACGTTGTCGATTGTGTCGGAGGACTCCACCTCCAACGTT 45288534 Query 34090 ATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTT 34130 || || || || ||||| |||||||| ||||| ||||| || Sbjct 45288533 ATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCATCTT 45288493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397055121846208