Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20maxima_20[genbank_20GCA_5F002006925.1_202017-03-07] 1,504 sequences; 345,757,338 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq7 105 8e-18 seq2 84.2 3e-11 seq1 82.4 9e-11 >seq7 Length=22269817 Score = 105 bits (116), Expect = 8e-18 Identities = 372/570 (65%), Gaps = 17/570 (3%) Strand=Plus/Plus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 |||||||||||| || || ||||| | || || ||||| | || ||||| | || Sbjct 8165169 GTGGAGACCCTCATCTCGAGAGATCAACTCGTTTGAGAATGTTAATCCCGGCATTAACCC 8165228 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 ||||| || | ||| || ||||| ||||| || |||||||| ||||||||||| || Sbjct 8165229 GCGCTTTTTGAGCCAAAATATCGCGCAAAAACTCCCTGAGAAGAAAATCCCCTCCACGCA 8165288 Query 127651 CGCGAACGCAAATAGACGCTCGGC-AAAGGAGCGGGACTTTGTATCAAACCACTTCATCG 127709 || ||||| | || | ||| || |||| | | | || | ||| || | || Sbjct 8165289 AGCAAACGCGATTAATCTCTCCGCGAAAGTCTCCGAGC----CGTCGATCCAATTTAACG 8165344 Query 127710 CCCACTGTGCCTTT-TTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTC 127768 ||||| ||| |||| || ||| || || || |||| ||| || | |||||| ||| Sbjct 8165345 CCCAC-GTGGCTTTCTTTGCGACGCAGGGAACCGTCTCGATGGCGTGAAAGAGACGGTTC 8165403 Query 127769 TTTTCTGATGGA-TCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCGTGGAC 127827 ||||| | ||| ||||||||||| | |||| || || || ||||| ||||| Sbjct 8165404 TTTTC-GTCGGAGTCTTTGATGTAAGTTTCTAGAAGCAGCGAGTACATTTCGGAGTGGA- 8165461 Query 127828 CATTTCATTATGGC--ACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCA 127885 ||| ||||| || | ||||||| | ||||| ||| | ||| ||||| Sbjct 8165462 -TGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCACGCGCCTCGGCGACCTGGACCTC- 8165519 Query 127886 TCGGCA--AAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACG 127943 || || || | || ||||| | || || || ||||| | || || || | Sbjct 8165520 -CGTCATGAACCTTCCGGCGAGGTTCTCGAGGACGATGCCGTCGGAGGCTGCGAAGAAGG 8165578 Query 127944 CCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCAGGGTCTTCCAGTCGTCGAGAT 128003 | || | | | | | ||| | || || | || | |||| || ||||| | ||||| Sbjct 8165579 CGAGCACGTGCGTGACGAAGTGCTTCTCGTCAGCGGTTAGGGCCTCCCAGTGGCGGAGAT 8165638 Query 128004 CCTTTGAGAGATCTACCTCCTCCGCAGTCCAATTGCTCATTTGAGCCTTCTTATAGAGTT 128063 | | || ||||| || ||||| || |||||| | || || ||||| || | || Sbjct 8165639 CTTGCGAAAGATCAACTTCCTCAGCGGTCCAAAACGACGCTTCGGCTTTCTTGTACATTT 8165698 Query 128064 CCCAGAGGTGGGGATACTTCAGGGGGAACA 128093 |||| | || || |||| | ||||||| Sbjct 8165699 CCCAAATTTGTGGGTACTGAATCGGGAACA 8165728 >seq2 Length=53008150 Score = 84.2 bits (92), Expect = 3e-11 Identities = 227/340 (67%), Gaps = 8/340 (2%) Strand=Plus/Plus Query 12752 GTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAA 12811 ||| || || || || |||| ||| || || | || || |||||||| || ||||| Sbjct 8162443 GTTAGTTGCAGCAATCACAATGATACCAGTATTACCCTCAAAACCATCCATTTCTGTCAA 8162502 Query 12812 GAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGGCATACCA--CCCGCACTGCGT 12869 || || || | ||| || || | |||||||||| | | | | | || | | | | Sbjct 8162503 AAGCTGGTTAAGGGTCTGCTCTCTTTCATCATTCCCT--CCTCCAATTCCAGTTCCTCTT 8162560 Query 12870 TGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCA 12929 || | || ||||| |||||||| || | || || || || || ||| || ||| Sbjct 8162561 TGTCTTCCAACGGCATCAATTTCATCCACAAATACAATGCAAGGAGCATTCTCTTTGGCC 8162620 Query 12930 A-CTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATT 12988 ||| ||| | |||||| ||||| ||||||||||| ||||||||||| ||||| | Sbjct 8162621 TTCTTGAAA-AGATCTCGGACTCTAGATGCACCGACACCAACAAACATCTCAACAAACTC 8162679 Query 12989 GGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGA 13047 | | | | || | || || || || || |||||| || || || ||| || | Sbjct 8162680 AGAACCTG-ATATGGAGAAAAATGGAACACCGGCTTCACCAGCAATTGCCTTGGCAAGAA 8162738 Query 13048 GGGTCTTCCCCGTCCCTGGTTTCCCCGCGAGAAGGGCACC 13087 | |||||||| || ||||| || ||||||| |||| Sbjct 8162739 GAGTCTTCCCAGTTCCTGGAGGACCAACGAGAAGAACACC 8162778 >seq1 Length=32082701 Score = 82.4 bits (90), Expect = 9e-11 Identities = 72/87 (83%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCT-GTGGA 115961 |||||||||| || ||||||||||||||||||||||| |||||| | |||| || || Sbjct 28522091 TAGATGTTGGAAGTATATGGCTCAAAGCACTCATTGTT-TCCAAGAATCTGGCTGGTTGA 28522033 Query 115962 GGCTGTGGGCATGGGTGCCATGAGAAG 115988 ||| || ||||| ||||||| ||||| Sbjct 28522032 GGCAGTTGGCATTGGTGCCACAAGAAG 28522006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613495666064640