Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20maxima_20[genbank_20GCA_5F002006925.1_202017-03-07] 1,504 sequences; 345,757,338 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq7 143 4e-29 seq1 138 2e-27 >seq7 Length=22269817 Score = 143 bits (158), Expect = 4e-29 Identities = 459/704 (65%), Gaps = 15/704 (2%) Strand=Plus/Plus Query 159744 CCAGCAACCTGTCTGCCACAAATTCGATGTAGCTACACATCTGCTCACAGTTGATCCCCA 159803 ||| ||| || || || ||||| || ||||| || |||| || | || ||||||| Sbjct 8164979 CCAACAATCTATCCGCGACAAACTCTATGTACTGACTCATCAATTCTCCATTCATCCCCA 8165038 Query 159804 GCAGC-CTAACGGGGAGCGCTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTC 159862 || | | |||| ||||| || ||| |||||| |||| ||||| ||||| || || Sbjct 8165039 CCAACGCGCACGGC-AGCGCATCGCACACAAACTCTCTCTCTATCTCCACCGCCTCCTTC 8165097 Query 159863 ACAATCTGCGAGACACGTTCGTACCCCGGCTT-GCCCAAAATGTGGTCCTTAAACAGGAG 159921 || | | | || | || | | |||| | || ||| | ||| || Sbjct 8165098 ACTAACGCCTTCACTCTCTCCTCGCTTAGCTTCGTCCTCAATAAACTGT----ACAACAG 8165153 Query 159922 GCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAG 159981 |||||| || |||||||| || ||||| || |||||||| |||||||| || | | | Sbjct 8165154 GCACGCGAAATCGCAGTGGAGACCCTCATCTCGAGAGATCAACTCGTTTGAGAATGTTAA 8165213 Query 159982 GCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAA 160040 |||||||| | ||| ||| |||||||||||| || | ||||||| | || | || | Sbjct 8165214 TCCCGGCATTAACCCGCGCTTTTTGAGCCAAAATATCG-CGCAAAAACTCCCTGAGAAGA 8165272 Query 160041 AGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCAT 160100 | |||||||||||| |||||||| | | ||||| | ||| | | | | | | Sbjct 8165273 AAATCCCCTCCACGCAAGCAAACGCGATTAATCTCTCCGCGAAA---GTCTCCGAGCCGT 8165329 Query 160101 GGGTCCACCTTTTGGCCCATTCAGCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGT 160160 | |||| || ||||| || |||||||||| ||| || | ||||| ||||| Sbjct 8165330 CGATCCAATTTAACGCCCACGTGGCTTTCTTTGCGACGCAGGGAACCGTCTCGATGGCGT 8165389 Query 160161 TAAACAATCTGTCCTGCTCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACA 160220 ||| | | || || || | || ||||| ||| | | ||| |||||||| Sbjct 8165390 GAAAGAGACGGTTCTTTTCGTCGGAGTCTTTGATGTAAGTTTCTAGAAGCAGCGAGTACA 8165449 Query 160221 TTTCTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGAT 160280 |||| | ||| | || |||||||| || || ||| |||||| |||||| Sbjct 8165450 TTTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCACGCGCCTCGGCGA 8165509 Query 160281 ACTGCACCTCCTGTGTGAACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCG 160340 ||| |||||| |||||||| | || || | || | ||||||| ||| | Sbjct 8165510 CCTGGACCTCCGTCATGAACCTTCCGGCGAGGTTCTCGAGGACGATGCCGTCGGAGGCTG 8165569 Query 160341 CAAAGAAAGCCAACACGTGAGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCC 160400 | ||||| || | |||||| | || ||| || ||||||| | | || | |||| Sbjct 8165570 CGAAGAAGGCGAGCACGTGCGTGACGAAGTGCTTCTCGTCAGCGGTTAGGGCC---TCCC 8165626 Query 160401 AGTGTGTCACGTCTTGGGCCAAATCAACCTCTTCCGCGCTCCAA 160444 |||| | ||||| | | |||||| || || ||| ||||| Sbjct 8165627 AGTGGCGGAGATCTTGCGAAAGATCAACTTCCTCAGCGGTCCAA 8165670 >seq1 Length=32082701 Score = 138 bits (152), Expect = 2e-27 Identities = 541/843 (64%), Gaps = 31/843 (4%) Strand=Plus/Minus Query 159648 TCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGT 159707 ||||||| || || || ||||| || | || || || | ||||| | | || || | Sbjct 31016953 TCTTCTCAAAGAAATTCGTCTTCCCTTGCAGCGAAATCAACTCCATCCAATCAAACGGAT 31016894 Query 159708 TCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATT 159767 || ||||| || |||| | ||||| || ||| |||||| ||||||||||| | Sbjct 31016893 TCGTCACGCCGTACACCTTCCCGCACCCGAGCGCACCCAACAACCTATCTGCCACAAACT 31016834 Query 159768 CGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGC-CTAACGGGGAGCGCTTCC 159826 | ||||| || |||| | | | ||| ||||||| || | |||| ||||| || Sbjct 31016833 CTATGTACTGACTCATCAACGCCCCGTTCATCCCCACCAATGCGCACGGC-AGCGCGTCG 31016775 Query 159827 GACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCGTAC 159886 ||| |||||| |||| ||||| ||||| || |||| ||| | || || || | Sbjct 31016774 CACACGAACTCCCTCTCTATCTCCACCGCCTCCTTCACTATCCCCTTCACGCGCTCCTC- 31016716 Query 159887 CCCGGCTTGCCCAAAATGTGGTCCTTAA--------ACAGGAGGCACGCAAAGTCGCAGT 159938 |||| ||| || |||| | ||| | |||||| || ||||||| Sbjct 31016715 ----GCTT------AATTTGTTCCTCAGCAAGCTGTACAACAAGCACGCGAAATCGCAGT 31016666 Query 159939 GCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCAC 159998 | ||||| || || || ||||| | |||||| || | | | ||||||||||| | ||| | Sbjct 31016665 GGAGTCCTTCATCTCGCGAGATTAGCTCGTTCGAGAAGGTTAGGCCCGGCATTAACCCGC 31016606 Query 159999 GCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAAAGATCCCCTCCACGGCC 160057 || ||| | |||||| || | |||| || | | | | || || ||||| |||||| Sbjct 31016605 GCTTTTTCAACCAAAATATCG-CGCAGAAACTGCCCGAGAAGAATATCCCTTCCACGCAA 31016547 Query 160058 GCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCC 160117 |||||||| | || ||||| | | | | | | | | | | |||| || |||| Sbjct 31016546 GCAAACGCTATCAGTCTCTCCGCGA---ATGTCTCCGAGCCGTCGATCCAATTTAGGGCC 31016490 Query 160118 CATTCAGCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCCTGC 160177 || || ||||| || || | |||||||| || | |||| ||| || | | || Sbjct 31016489 CAATCGGCCTTTTTGGCAACGCACGGCACAGTTTCAAAGGCGCGAAATAAGCGGCTCTTT 31016430 Query 160178 TCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTT 160237 || | | || || || | | || |||||||||||| | ||| | || Sbjct 31016429 TCGTCGGAGTTTTTTATGTACGTTTCTAGAAGGAGCGAGTACATTTCGGAGTGGATGTTC 31016370 Query 160238 TCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATAC-TGCACCTCCTGTGT 160296 |||||||| || || ||| |||||| ||||| | || || || | || | | Sbjct 31016369 TCGATGGCGATTTGGAAGCCGTAGAAGGCACGCGCCT-CGGAGACTTGGATTTCTTTCAT 31016311 Query 160297 GAACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACAC 160356 |||||| | || || | || | || || | ||| || ||||| || | ||| Sbjct 31016310 GAACCTGGCGGCGAGGTTTTCGAGGACGATTCCATCCGAGGCGGCGAAGAAGGCGAGCAC 31016251 Query 160357 GTGAGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGTGTGTCACGTCTTG 160416 ||| | |||||| ||| ||||||| | || |||||| || | ||| || Sbjct 31016250 GTGCGTGATGAAGTGTTTCTCGTCGGCCGTTAG---GGATTCCCACTGGCGGATGTCCTG 31016194 Query 160417 GGCCAAATCAACCTCTTCCGCGCTCCAATTGGCAGCCTGAGCAGTTTTGTACATGGCCCA 160476 | || |||||||| ||||| ||||| | ||| | || | |||||||| |||| Sbjct 31016193 CGACAGGTCAACCTCCTCCGCCGTCCAAAATGAAGCTTCGGCTTTCTTGTACATTTCCCA 31016134 Query 160477 GAT 160479 ||| Sbjct 31016133 GAT 31016131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795140251082240