Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20maxima_20[genbank_20GCA_5F002006925.1_202017-03-07] 1,504 sequences; 345,757,338 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq6 102 6e-17 seq2 86.0 4e-12 >seq6 Length=23636167 Score = 102 bits (112), Expect = 6e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 39508 AGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCG 39567 || || | |||||||||| ||||||||| || || |||||||||||| ||| | || Sbjct 4424217 AGGACAAGATGCAAAGTGGATTCTTTTTGAATGTTGTAATCGGCCAAAGTGCGGCCGTCT 4424158 Query 39568 TCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCG 39627 || | ||| |||||| |||| || | ||||||||| |||| || | || || ||||| Sbjct 4424157 TCGAGTTGCTTCCCGGCAAAGATGAGACGCTGCTGGTCCGGCGGAATTCCCTCCTTGTCC 4424098 Query 39628 CATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGT 39686 || || || | ||| | | | |||||| | ||| ||||| || | || ||||| Sbjct 4424097 TGGATCTTGGCCTTGA-CGTTGTCGATTGTGTCGGAGCTCTCCACTTCGAGGGTGATTGT 4424039 Query 39687 TTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || || | ||||| || || |||||||| Sbjct 4424038 CTTGCCGGTGAGGGTTTTCACAAATATCTGCAT 4424006 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 39505 CGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCA 39564 ||||| |||| ||| | || || || || || |||||||| || | | | | || Sbjct 4326855 CGCAGAACCAGATGAAGGGTCGACTCCTTCTGGATGTTATAATCCGCAAGAGTCCTTCCA 4326796 Query 39565 TCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTG 39624 || || | ||||| || | || || |||||||||||||||| || | ||||| || Sbjct 4326795 TCCTCAAGCTGTTTGCCAGCGAAGATCAAACGCTGCTGATCCGGTGGAATTCCTTCCTTA 4326736 Query 39625 TCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATT 39684 || |||||| || | | | | |||||||| ||| || || |||||||||||| Sbjct 4326735 TCTTGGATTTTTGCCTTGACATTGTCAATTGTGTCTGAGCTCTCAACTTCCAAAGTAATT 4326676 Query 39685 GTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 ||||| || || | || || || || ||||||||| Sbjct 4326675 GTTTTCCCAGTAAGGGTCTTAACAAATATCTGCATG 4326640 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 || || || || || ||||||||||| ||| |||| || | ||| || ||| | || Sbjct 4366007 TCCTTCTGGATGTTGTAATCGGCCAAGGTGCGGCCATCTTCGAGTTGCTTTCCGGCGAAG 4365948 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTC 39648 || | |||||||||||||| || | || || ||||| || || || | ||| Sbjct 4365947 ATCAGACGCTGCTGATCCGGAGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTT 4365889 Query 39649 G-CTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTAC 39707 | | | |||||| | ||| ||||| || | ||| || ||||| || |||| ||||| || Sbjct 4365888 GTCGATTGTGTCAGAGCTCTCCACTTCGAGAGTGATCGTTTTGCCGGTTAGGGTTTTCAC 4365829 Query 39708 GAAGATCTGCAT 39719 |||||||||||| Sbjct 4365828 GAAGATCTGCAT 4365817 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 || || || || || ||||||||||| ||| |||| || | ||| || ||| |||| Sbjct 4416544 TCCTTCTGGATGTTGTAATCGGCCAAGGTGCGGCCATCTTCGAGTTGCTTTCCGGCAAAG 4416485 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTC 39648 || | |||||||||||||| || | || || ||||| || || || | ||| Sbjct 4416484 ATCAGACGCTGCTGATCCGGAGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTCA-CGTT 4416426 Query 39649 G-CTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTAC 39707 | | | ||||| | ||| ||||| || | ||| || ||||| || |||| ||||| || Sbjct 4416425 GTCGATGGTGTCAGAGCTCTCCACTTCGAGAGTGATCGTTTTGCCGGTTAGGGTTTTCAC 4416366 Query 39708 GAAGATCTGCAT 39719 |||||||||||| Sbjct 4416365 GAAGATCTGCAT 4416354 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 ||||| | || ||||| |||| ||| | ||| || || || || || ||||| || Sbjct 4424460 CCGCCCCTCAGACGCAACACCAGATGAAGAGTCGACTCCTTCTGAATGTTGTAATCCGC- 4424402 Query 39553 AAAACG--CGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGG 39610 || || | | |||| |||| || ||||| |||| || | ||||||||||| | | Sbjct 4424401 -AAGCGTCCTTCCATCCTCCAGCTGCTTCCCAGCAAAGATCAGGCGCTGCTGATCAGGTG 4424343 Query 39611 GTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTG-TGTCTGCGCTTTCC 39669 ||| ||||| ||||| |||||| || | ||| | | || |||| | ||| || Sbjct 4424342 GTATCCCTTCCTTGTCCTGGATTTTTGCCTTGA-CGTTGTCAATGGTGTCAGAGCTCTCG 4424284 Query 39670 ACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || |||| ||| || || || ||||| | ||||| |||||||||||||| Sbjct 4424283 ACTTCCAGAGTGATCGTCTTTCCCGTCAGGGTTTTGACGAAGATCTGCAT 4424234 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || || | ||| || || | ||| | || ||| ||||| ||||| |||||||| Sbjct 5506611 GCCTCCACGGAGACGAAGCACAAGATGAAGCGTCGATTCCTTTTGGATATTGTAATCGGC 5506552 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 ||| ||| |||| || | ||||| || | || || | ||||||||| |||| || Sbjct 5506551 CAAGGTGCGGCCATCTTCGAGCTGTTTTCCAGCGAAGATCAGACGCTGCTGGTCCGGAGG 5506492 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCA 39670 | ||||| ||||| || || || | ||| | | | ||||| | ||| || | Sbjct 5506491 GATTCCTTCCTTGTCTTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCGGAGCTCTCGA 5506433 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || | |||||| || || || |||| ||||| |||||||||||||| Sbjct 5506432 CTTCGAGAGTAATGGTCTTGCCGGTTAGGGTTTTCACGAAGATCTGCAT 5506384 >seq2 Length=53008150 Score = 86.0 bits (94), Expect = 4e-12 Identities = 150/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 39505 CGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCA 39564 || || ||||| || | |||| |||||| || || ||||| || || | | | | || Sbjct 27127092 CGAAGAACCAAGTGAAGAGTGGATTCTTTCTGGATGTTATAGTCTGCAAGAGTCCTTCCA 27127151 Query 39565 TCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTG 39624 || || | || || || ||||||| | | ||||||||| | || | || || ||| Sbjct 27127152 TCTTCAAGCTGCTTTCCAGCAAAAATGAGCCTCTGCTGATCTGGTGGGATACCCTCCTTG 27127211 Query 39625 TCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCACGTCCAAAGTAAT 39683 || |||||| ||| | ||| | | | ||||| | ||||| || || | |||||| Sbjct 27127212 TCTTGAATTTTTGCTTTCA-CGTTGTCGATGGTGTCAGAACTTTCAACCTCAAGAGTAAT 27127270 Query 39684 TGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||||| || || | ||||| || ||||||||||| Sbjct 27127271 TGTTTTTCCGGTGAGCGTTTTCACAAAGATCTGCAT 27127306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347363232715232