Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20maxima_20[genbank_20GCA_5F002006925.1_202017-03-07] 1,504 sequences; 345,757,338 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq2 140 4e-28 seq3 87.8 2e-12 seq6 82.4 9e-11 >seq2 Length=53008150 Score = 140 bits (154), Expect = 4e-28 Identities = 314/463 (68%), Gaps = 14/463 (3%) Strand=Plus/Plus Query 15917 ATCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACCTGTTTCGTTATCAAA 15976 |||||| || || | | || ||||| || || |||| ||||| || | ||||| Sbjct 8162425 ATCAAGAATGTCCGCCCTGTTAGTTGCAGCAATCACAATGATACCAGTATTACCCTCAAA 8162484 Query 15977 ACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 16036 ||||||||| ||||||||||||||||||| || || || | |||||||||| || | | Sbjct 8162485 ACCATCCATTTCTGTCAAAAGCTGGTTAAGGGTCTGCTCTCTTTCATCATTCCCT--CCT 8162542 Query 16037 ACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCAT 16094 | | |||| | | ||| |||| ||||||||||| ||||| | || || ||||| Sbjct 8162543 CCAATTCCAGTTCCTCTTTGTCTTCCAACGGCATCAATTTCATCCACAAATACAATGCAA 8162602 Query 16095 GGTTGATTTTC-GCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAAC 16153 || ||| || | | ||| ||| ||||| || || | || || |||||||| Sbjct 8162603 GGAGCATTCTCTTTGGCCTTCTTGAAA-AGATCTCGGACTCTAGATGCACCGACACCAAC 8162661 Query 16154 AAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCG 16212 ||||||||| ||||| | | | | | || | || || || ||| | |||||| | Sbjct 8162662 AAACATCTCAACAAACTCAGAACCTG-ATATGGAGAAAAATGGAACACCGGCTTCACCAG 8162720 Query 16213 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTC 16272 |||| || ||| ||||||||||| || || ||||| ||| |||| || |||| Sbjct 8162721 CAATTGCCTTGGCAAGAAGAGTCTTCCCAGTTCCTGGAGGACCAACGAGAAGAACACCCT 8162780 Query 16273 GTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATCT 16332 |||||| || ||| | |||||||||| | |||||| || ||||| | Sbjct 8162781 TTGGAATACGAGCTCCAACAGCTGTAAATCTCTCAGGCTTCTTAAGGAACTCCAC---CA 8162837 Query 16333 CTTCC---AATTCATCTTTGGCGGCGTCAATCCCCTCAACATC 16372 ||||| || || | ||| || | |||| || ||||||| Sbjct 8162838 CTTCCATGAAATCTTGTTTTGCCTCATCAACTCCGGCAACATC 8162880 >seq3 Length=30666748 Score = 87.8 bits (96), Expect = 2e-12 Identities = 153/217 (71%), Gaps = 12/217 (6%) Strand=Plus/Minus Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 ||| |||||||| || ||||||||||| |||||||| || || | |||||| || || Sbjct 29776319 AAAGCCATCCATTTCAGTCAAAAGCTGATTAATAGTCTGCTCTCTTTCATCGTTTCCT-- 29776262 Query 16034 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 16091 | | | | || || | | || | ||||| |||||||| |||||||| || || || Sbjct 29776261 CCTCCAAGCCCTGCTCCTCTCTGTCTCCCCACAGCATCAATTTCATCAATAAACACAATA 29776202 Query 16092 CATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTG--GCGCCCAC 16147 || ||| |||| | || ||||| | ||||| ||| || | ||||| || Sbjct 29776201 CACGGT--GCCTTCGATTTGGCCTTCTCAAACAAATCCC--TCACTCTGGATGCGCCAAC 29776146 Query 16148 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACAT 16184 ||||||||||| ||| ||||| | || ||| | |||| Sbjct 29776145 ACCAACAAACAACTCAACAAACTCTGAGGCAGCACAT 29776109 >seq6 Length=23636167 Score = 82.4 bits (90), Expect = 9e-11 Identities = 154/223 (69%), Gaps = 10/223 (4%) Strand=Plus/Plus Query 111537 GACTTTGGTTATTTTGGTCTCAAGACCCTCGAGAAAAGCTACCTCC-AAAG----ACTGG 111591 |||| || ||| ||||| |||| ||||| |||| ||||||| |||| | || Sbjct 11060646 GACTATGATTACTTTGGCTTCAAAACCCTTGAGAGGTCCTACCTCTTAAAGGTCCAAGGG 11060705 Query 111592 ATGGTGTCTTGATGGAAACCCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATG 111651 | ||| || | |||| || ||| | ||||| ||| |||| | || || || || Sbjct 11060706 AAGGT----TG-TAGAAAGACCTCAGCATATGTTGATGAGGGTTTCTATTGGAATTCACA 11060760 Query 111652 GGGAAGATATTGATTCTGTTTTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCC 111711 ||| ||||||||||||| | | | |||||| | | |||||||| | ||||| || Sbjct 11060761 AGGATGATATTGATTCTGCTATTAAAACATACCATATGATGTCCCAAAGATGGTTCACCC 11060820 Query 111712 ACGCAACACCAACCCTCTTCAACGCTGGTACACCAAGACCCCA 111754 | ||| | || || || || || ||||| || ||||| ||||| Sbjct 11060821 ATGCATCTCCTACACTTTTTAATGCTGGAACTCCAAGGCCCCA 11060863 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620730730042880