Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20maxima_20[genbank_20GCA_5F002006925.1_202017-03-07] 1,504 sequences; 345,757,338 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq2 145 9e-30 seq1 104 3e-17 seq6 100 3e-16 seq7 96.9 4e-15 seq3 95.1 1e-14 >seq2 Length=53008150 Score = 145 bits (160), Expect = 9e-30 Identities = 313/462 (68%), Gaps = 12/462 (3%) Strand=Plus/Plus Query 9224 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAA 9283 |||||| || || | | || || || || || |||| ||||| || | | ||||| Sbjct 8162425 ATCAAGAATGTCCGCCCTGTTAGTTGCAGCAATCACAATGATACCAGTATTACCCTCAAA 8162484 Query 9284 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 9343 ||||||||| ||||||||||| ||||||| || || || | |||||||||| || | | Sbjct 8162485 ACCATCCATTTCTGTCAAAAGCTGGTTAAGGGTCTGCTCTCTTTCATCATTCCCT--CCT 8162542 Query 9344 ACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACAT 9401 | | |||| | | ||| |||| ||||||||||| ||||| | || ||||| || Sbjct 8162543 CCAATTCCAGTTCCTCTTTGTCTTCCAACGGCATCAATTTCATCCACAAATACAATGCAA 8162602 Query 9402 GGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACA 9461 || ||| || ||| | | || ||||| || || || || || ||||||||| Sbjct 8162603 GGAGCATTCTCTTTGGCCTTCTTGAAAAGATCTCGGACTCTAGATGCACCGACACCAACA 8162662 Query 9462 AACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGC 9520 |||||||| ||||| | | | | | || | || || || ||| | |||||| || Sbjct 8162663 AACATCTCAACAAACTCAGAACCTG-ATATGGAGAAAAATGGAACACCGGCTTCACCAGC 8162721 Query 9521 AATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCG 9580 ||| || ||| ||||||||||| || || ||||| ||| |||| || ||||| Sbjct 8162722 AATTGCCTTGGCAAGAAGAGTCTTCCCAGTTCCTGGAGGACCAACGAGAAGAACACCCTT 8162781 Query 9581 TGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCACAATCTC 9640 |||||| || ||| | |||||||||| | ||| || || ||||| | | Sbjct 8162782 TGGAATACGAGCTCCAACAGCTGTAAATCTCTCAGGCTTCTTAAGGAACTCCAC---CAC 8162838 Query 9641 TTCC---AATTCATCTTTGGCGGCGTCAATCCCCTCAACATC 9679 |||| || || | ||| || | |||| || ||||||| Sbjct 8162839 TTCCATGAAATCTTGTTTTGCCTCATCAACTCCGGCAACATC 8162880 >seq1 Length=32082701 Score = 104 bits (114), Expect = 3e-17 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 107167 CTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG 107226 ||| | ||||||||| |||||||| || || || || | ||| || | ||| | ||| Sbjct 28519580 CTGGGCTCTTGGTGTTCCAGCATTAAAAAGTGTGGGAGATGCATGGGTAAACCATCGTTG 28519521 Query 107227 GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGC 107286 |||||| | | |||||| | | | ||||||||||||| ||| ||| || || | || Sbjct 28519520 AGACATCATATGGTATGTTTTGATGGCAGAATCAATGTCATCCTTGTGAATCCCAACAGC 28519461 Query 107287 CACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAGA-- 107344 || | ||| ||||| | ||||||| |||| | | | || | || | || |||| Sbjct 28519460 AACCCTCATCAACATATGTTGGGGTCTTTCTACAACTTTTCCTTGGA--CCTTCAAGAGG 28519403 Query 107345 TAGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 107394 ||| | |||| |||||||||| ||||| ||| || | ||| | ||||| Sbjct 28519402 TAGGACCTCTCCAGGGTTTTGAAGCCAAAATAATCATAGTCAAAATCCCG 28519353 >seq6 Length=23636167 Score = 100 bits (110), Expect = 3e-16 Identities = 169/241 (70%), Gaps = 4/241 (2%) Strand=Plus/Minus Query 107157 AACTGGACAT--CTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAAT 107214 |||| |||| ||| || ||||| || |||||||| || || || || | ||| || | Sbjct 11060876 AACTAAACATGCCTGGGGCCTTGGAGTTCCAGCATTAAAAAGTGTAGGAGATGCATGGGT 11060817 Query 107215 GAACATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTG 107274 |||| | |||||||||| | | |||||| | | |||||||||| || ||| ||| Sbjct 11060816 GAACCATCTTTGGGACATCATATGGTATGTTTTAATAGCAGAATCAATATCATCCTTGTG 11060757 Query 107275 GATGCCGATGGCCACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAG 107334 || || || | || | ||| ||||| | || ||| |||| | | | || | || Sbjct 11060756 AATTCCAATAGAAACCCTCATCAACATATGCTGAGGTCTTTCTACAACCTTCCCTTGGA- 11060698 Query 107335 CCGTTGA-AGATAGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCC 107393 || || | || ||| | ||||||||||||||| ||||||||| || | ||| | |||| Sbjct 11060697 CCTTTAAGAGGTAGGACCTCTCAAGGGTTTTGAAGCCAAAGTAATCATAGTCAAAATCCC 11060638 Query 107394 G 107394 | Sbjct 11060637 G 11060637 >seq7 Length=22269817 Score = 96.9 bits (106), Expect = 4e-15 Identities = 169/245 (69%), Gaps = 7/245 (3%) Strand=Plus/Plus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 |||||||||||||||||| || || | || |||||||| || || ||||| | || Sbjct 8165169 GTGGAGACCCTCATCTCGAGAGATCAACTCGTTTGAGAATGTTAATCCCGGCATTAACCC 8165228 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 ||||| || | |||| | || ||||| || ||| |||||||| || |||||||| || Sbjct 8165229 GCGCTTTTTGAGCCAAAATATCGCGCAAAAACTCCCTGAGAAGAAAATCCCCTCCACGCA 8165288 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAGG--AGCGAGACTTTGTGTCAAACCATTTCATT 117462 |||||||| | | | ||| ||||| | |||| | ||| | ||| || | Sbjct 8165289 AGCAAACGCGATTAATCTCTCCGCGAAAGTCTCCGAGCC-----GTCGATCCAATTTAAC 8165343 Query 117463 GCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAACTGCTTC 117522 ||||| | || ||||| | | || || || || | |||||| | ||| | | ||| Sbjct 8165344 GCCCACGTGGCTTTCTTTGCGACGCAGGGAACCGTCTCGATGGCGTGAAAGAGACGGTTC 8165403 Query 117523 TTTTC 117527 ||||| Sbjct 8165404 TTTTC 8165408 >seq3 Length=30666748 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/213 (70%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 9281 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9340 ||| |||||||| || |||||||| || |||||||| || || | |||||| || || Sbjct 29776319 AAAGCCATCCATTTCAGTCAAAAGCTGATTAATAGTCTGCTCTCTTTCATCGTTTCCT-- 29776262 Query 9341 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATA 9398 | | | | || || | | || | ||||| |||||||| |||||||| || |||||| Sbjct 29776261 CCTCCAAGCCCTGCTCCTCTCTGTCTCCCCACAGCATCAATTTCATCAATAAACACAATA 29776202 Query 9399 CATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCA 9458 || ||| || ||| | ||||| | ||| | || || ||||| |||||| Sbjct 29776201 CACGGTGCCTTCGATTTGGCCTTCTCAAACAAATCCCTCACTCTGGATGCGCCAACACCA 29776142 Query 9459 ACAAACATCTCCACAAAGTTTGCGGCGGAACAT 9491 ||||||| ||| ||||| | || ||| | |||| Sbjct 29776141 ACAAACAACTCAACAAACTCTGAGGCAGCACAT 29776109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589969708360960