Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20maxima_20[genbank_20GCA_5F002006925.1_202017-03-07] 1,504 sequences; 345,757,338 total letters Query= NC_015265.1 Length=37236 Score E Sequences producing significant alignments: (Bits) Value seq1504 215 1e-51 >seq1504 Length=2444 Score = 215 bits (238), Expect = 1e-51 Identities = 707/1071 (66%), Gaps = 27/1071 (3%) Strand=Plus/Plus Query 15738 ACCAGATAGCGGTCGGTGATGCGCTGGCGGAACGTCAGGTCTTCGAGCGGCGGGGCAGGG 15797 ||||| || ||||| |||||||||||||| | | |||||| ||| |||||||| | || Sbjct 1251 ACCAGGTAACGGTCAGTGATGCGCTGGCGCAGCATCAGGTTTTCCAGCGGCGGCACTGGC 1310 Query 15798 CAGAAGTCGTAATCGATGAAGCCCTGGCCGGCCTTGAGCG-AATCCTTGTCGTTCGCGCC 15856 ||||||| ||||| || | ||||| || || | || |||||||| ||| Sbjct 1311 GTATAGTCGTAGTCGATCCAGAGTTTCCCGGCTTTCAGGGCTGTCTTTGTCGTTAACGCT 1370 Query 15857 CGGATCGAACCAGCATTCGCCGTCGATCAGGTAGCCGGCGGTCTTCCACGC-GCGGAACT 15915 ||| | |||||| || ||| |||| |||||||| | | | ||| || ||| | | Sbjct 1371 GTCATCAATCCAGCAATCACCGCCGATGAGGTAGCC--CTGATTACCAGGCTGCGCATTT 1428 Query 15916 TCGCATTCACGCCATCGACGATGTCGCGCATCAGCGTGCGGCTCATCGGCTGGTCGACGG 15975 | || | || |||| || ||||| ||||| || | | |||| || || | Sbjct 1429 TGGCGCGGATACCTTCGATAATATCGCGGGCCAGCGACGGGTTAAGCGGCATATCCACCG 1488 Query 15976 CCCACATGTGCGCCTCGGCCATCGTGTCGGCGATCACCTGCGCACTGCGCACATAGTTCT 16035 ||||||| || |||| ||||| ||||| || | |||||||| |||| ||||| | Sbjct 1489 CCCACATATGGCCCTCTGCCATGGTGTCAGCCAGTACCTGCGCGGTGCGGGTGTAGTTTT 1548 Query 16036 CGAACGCCCACAGCTTGTCCTCGGAACAGG-TGCGCGATCCCCATAGACGGTAACCGTCC 16094 | ||| ||||| | | |||| ||| || ||||| | ||| |||| ||| Sbjct 1549 CAAACTGGAACAGCGGATTCATCACTCAGGCAGCGGGAACCCCAGAAGCGGAAACCATCC 1608 Query 16095 GCGTTCACCAGCGTGGTCACTTCGTGGCTGTTCAGGTAGCCCGCGTCGGTGTTCGGGTCC 16154 | | || ||||| || |||| |||||| || || || || ||||||| Sbjct 1609 TTCCTGATCAAGGTGGTGACGTCGTTCTGGTTCAGCAGTCCGGCATCAGTTGCCGGGTCC 1668 Query 16155 TGCAGGTCCCAGAACACGT-CGCGGCTGATGCCCGTGACGCCGTTGACCACGACGTTCGA 16213 ||||| ||||||||||| | ||| | | ||| || |||||||||| | | ||||| || Sbjct 1669 TGCAGATCCCAGAACACATCCGCAG-ACAAGCCGGTTACGCCGTTGA-CGCCACGTTAGA 1726 Query 16214 GATCGTCTTGTGCCAGCCGATCTCTTCGTCGA-TCTTCGCGCGCATGCCGAGCGCGCGCG 16272 | || |||||||||||| | | ||||||| | || ||||||| ||| || ||||| | Sbjct 1727 CAGGGTTTTGTGCCAGCCGGTTTGCTCGTCGATTTTTAGCGCGCA-GCCAAGGGCGCG-G 1784 Query 16273 CCGTTGCCCACGTGATGTCCTCGGCGTTGGTCGTGGTGTTCCAGTTCACGAAATCCGGCC 16332 ||| || | | | | | || || | | |||| |||| | ||| || |||| Sbjct 1785 GCGTAGCGTA-GCGGTCGCATCCGCCTGCAGCACCGTGTCAAAGTTTATGAAGTCAGGCC 1843 Query 16333 AGATCGTCATCAGCTCACGCTGGCCGAAGTTCGCGCGGTAGGTGGTCGCTTCCTCCTTCG 16392 |||| |||| |||||||||| |||||| ||||||| ||| |||| || | | || Sbjct 1844 AGATAATCATTCCTTCACGCTGGCTGAAGTTGTCGCGGTAAGTGATCGC-TCTTGCCACG 1902 Query 16393 TCTGTGC-GCCGAACGCGCTGATGTAGCCGAAGCCGCGCAGCTTCTGCGCGATCGTCGCA 16451 | | | |||| | || || || | ||| | ||||| ||||||| | || | Sbjct 1903 GTTTTACAGCCGTAAGCTGACATATACGCAAAGGCCCGCAGGCTCTGCGCCACGCTCAC- 1961 Query 16452 AGCTCGGACGCGACGGGCAGGGTGTCGAGGCCTGG-ACAACCGAGCACGCGCGGCTTCAC 16510 ||||| | | |||| | | || || | || || || | || | |||||| ||||| Sbjct 1962 AGCTCAGTGGATACGGCCTGCGTATCATGCCCCGGCACGCCGAAGAATGCGCGGTTTCAC 2021 Query 16511 GCCGAGGCGGCTCTTCGCGGCGAGCAGCGCCTTCATACCGGTGTACTGACCGTCCGCGGT 16570 ||| || | || ||||| || ||||||||||| ||||| | || |||||| || || Sbjct 2022 GCC-AGCTGCGACTGCGCGGAAAGTAGCGCCTTCATGCCGGTTTTCTTACCGTCGGCAGT 2080 Query 16571 GGTCGTGCCGATCACGTTGCTGGTCGTGGTATCCGGATC--CTTGCCGGTCGGC-ACACG 16627 |||||| | | | | ||||| |||| || || | | ||| || || Sbjct 2081 CACGCCGCCGATAA---TATTTGAGGTGGTTTCCGCTTCGGTTTCGCCCTGGGCAACGCG 2137 Query 16628 CACCGCGACGATCAGCGGG--GACGTCTGCGCGGCGATCGCATCGAGCGAACGCGCGAGC 16685 |||| | ||| | | |||| | ||| | |||||||| || || || || || ||| Sbjct 2138 CACCACTACGGTGA-CGGGTTTTTGCCTGGTCTGCGATCGCGTCCAGTGAGCGGGCCAGC 2196 Query 16686 GTGCCCTTCGTGCCTGCCTTGCCGATCGCTGCCTGCACGTCGGTGATGAGAACGGGACGG 16745 || || | ||| || || ||| | || | | | || ||||| | || || | | Sbjct 2197 GTACCGGACTCGCCCGCTTTACCGCTGGCGGTCAGTACATCGGTAAGCAGTACCAGGCTT 2256 Query 16746 TTTTCG-GGGAAGGTGGCCGCATCGGCGTCGTCGGCCGTGCTGACCAGGCC 16795 || | ||||| ||| |||||||| || ||| | |||| |||| ||| Sbjct 2257 ATTGAGCGGGAACATGGAGGCATCGGCATCATCGCCGGTGCACACCATGCC 2307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 119031474059904