Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20maxima_20[genbank_20GCA_5F002006925.1_202017-03-07] 1,504 sequences; 345,757,338 total letters Query= NC_015266.1 Length=40555 Score E Sequences producing significant alignments: (Bits) Value seq1504 269 7e-68 >seq1504 Length=2444 Score = 269 bits (298), Expect = 7e-68 Identities = 793/1194 (66%), Gaps = 36/1194 (3%) Strand=Plus/Plus Query 14113 ACGCGCGAGGCGAAATCGGCGAGATAGCGATCGGTGATGCGCTGGCGCAGCTTCAGGTTT 14172 ||||| | || |||||| | || || || || |||||||||||||||||| |||||||| Sbjct 1233 ACGCGGGTGGTGAAATCCACCAGGTAACGGTCAGTGATGCGCTGGCGCAGCATCAGGTTT 1292 Query 14173 TCGAGCGGCGGGACCGGCGTGTAGTCGTAGTCGATCCAT-GTACCGCCCGACGTCAGCTC 14231 || |||||||| || ||||| ||||||||||||||||| || | || | |||| Sbjct 1293 TCCAGCGGCGGCACTGGCGTATAGTCGTAGTCGATCCAGAGTTTC-CCGGCTTTCAG--- 1348 Query 14232 GTCGGTCGTGTTCGGCTCCGG-GTCGTA---CCAGGCGCCGCCACCGATCAGCTCGCCGA 14287 | | ||| | ||| || ||| | |||| | || ||||| || | ||| Sbjct 1349 GGCTGTCTTTGTCGTTAACGCTGTCATCAATCCAGCAATCACCGCCGATGAGGTAGCC-- 1406 Query 14288 CCGAG-ACTTCGCGGCGGAACCACGCGTTGATGTTCTCGATGATGTcgcgcgcgcgcgAC 14346 | || || || ||| | ||| ||| ||||| || ||||| || ||||| Sbjct 1407 CTGATTACCAGGCTGCGCATTTTGGCGCGGATACCTTCGATAATATCGCGGGCCAGCGAC 1466 Query 14347 GGGTTGAGCGGGCCGTCGACGACGCCCATCTGTTCCTCGGCGATCGTGTCAGCGATCACC 14406 ||||| ||||| || || | | ||| || |||| || || |||||||| | ||| Sbjct 1467 GGGTTAAGCGGCATATCCACCGCCCACATATGGCCCTCTGCCATGGTGTCAGCCAGTACC 1526 Query 14407 TGTGCCGAACGCGTGTAGTTCTCGAAGAAGAACTTGCCG-TCCGCGTCGCACGT-GCGCG 14464 || || | || |||||||| || || |||| || | | | | || | ||| | Sbjct 1527 TGCGCGGTGCGGGTGTAGTTTTCAAACTGGAACA-GCGGATTCATCACTCAGGCAGCGGG 1585 Query 14465 AGCCCCAGAAACGGAAGCCGT--TTCGGTTGACGAGCGTGGTGACCTGGTTCTCGTTCAG 14522 | |||||||| ||||| || | ||| ||| | |||||||| | ||||| |||||| Sbjct 1586 AACCCCAGAAGCGGAAACCATCCTTCC--TGATCAAGGTGGTGACGTCGTTCTGGTTCAG 1643 Query 14523 ATAGCCGGCGTCCGTTGCCGGGTCTTGCAAATCCCACGACACGTCCGCGCTGATGCCGGT 14582 ||||| || ||||||||||| |||| |||||| |||| ||||| | |||||| Sbjct 1644 CAGTCCGGCATCAGTTGCCGGGTCCTGCAGATCCCAGAACACATCCGCAGACAAGCCGGT 1703 Query 14583 CACGCCGTTGACGACGACGTTCGACAGCGTCTTGTGCCAGCCGATGTCGTTGTCGATCTT 14642 |||||||||||| | ||||| ||||| || |||||||||||| | | | |||||| || Sbjct 1704 TACGCCGTTGACGCC-ACGTTAGACAGGGTTTTGTGCCAGCCGGTTTGCTCGTCGATTTT 1762 Query 14643 C-GCGCGCAGGCCCGC-CGCGATCGCCGGCGCCGGGATGGCGACGGTCGAGTTCGTTATG 14700 |||||||| | | |||| || | || | | | || | | | | | | Sbjct 1763 TAGCGCGCAGCCAAGGGCGCGGGCGTAG-CGTAGCGGTCGCATCCGCC---TGCAGCACC 1818 Query 14701 TCGTCCCAGCCGAGCCAATCCGGCCAGATCACCATGATTTCGCGCTGGCCGAACTGCTTG 14760 ||| || | | || |||||||| | ||| ||| ||||||| ||| | | | Sbjct 1819 GTGTCAAAGTTTATGAAGTCAGGCCAGATAATCATTCCTTCACGCTGGCTGAAGTTGTCG 1878 Query 14761 CGGTACGCGACCGCCTCTTCCTTCG-TCTTGCAGCCGTGCGCGGCGACGTACACCATCGC 14819 ||||| | || ||| |||| | || | || ||||||| || | | ||| | | || Sbjct 1879 CGGTAAGTGATCGC-TCTTGCCACGGTTTTACAGCCGTAAGCTGACATATACGCAAAGGC 1937 Query 14820 GCGCAGCGATTGCGCGATCGTCGCGAATGCTGCGGCGACGGGCTGCGTGTCGAGGCCGGG 14879 ||||| ||||| | || | | | | || |||| |||||| || | || || Sbjct 1938 CCGCAGGCTCTGCGCCACGCTCACAGCT-CAGTGGATACGGCCTGCGTATCATGCCCCGG 1996 Query 14880 CGCGACCAGGA-TGCGCGGCTTCACGGCGAGCTTCCCCTGCGCGGCCAGCAACGCCTTCA 14938 | || | | || ||||||| |||||| | |||| | |||||||| || | |||||||| Sbjct 1997 CACGCCGAAGAATGCGCGGTTTCACGCC-AGCTGCGACTGCGCGGAAAGTAGCGCCTTCA 2055 Query 14939 TGCCGGTGTATTTGCCGTCCGGCGTGACGGTGCCGATGACGTTCGCGGTCGTCTCGGCTT 14998 ||||||| | || ||||| | || ||| |||||| | || | ||| || || |||| Sbjct 2056 TGCCGGTTTTCTTACCGTCGGCAGTCACGCCGCCGATAATATTTGAGGTGGTTTCCGCTT 2115 Query 14999 CGTCCTTTCCTTCCGCGACGCGCACGACGACGGTGACGGG-CTTCGTCTGCTTGCCGATC 15057 || | || | || |||||||| || ||||||||||| || | ||| | ||||| Sbjct 2116 CGGTTTCGCCCTGGGCAACGCGCACCACTACGGTGACGGGTTTTTGCCTGGTCTGCGATC 2175 Query 15058 GCGTCGAGCGTGCGGCGCAGCGTGCCCTTCGTGCCGGCCTTGCCAAGCGCCGCGATGACG 15117 ||||| || | |||| |||||| || | ||| || || || || | | || Sbjct 2176 GCGTCCAGTGAGCGGGCCAGCGTACCGGACTCGCCCGCTTTACCGCTGGCGGTCAGTACA 2235 Query 15118 TTCGTCAGCAGCACC-GGCGTGTCGAGCGGGAACGTCGCCGGGTCGGCGNNNNNNNNNNT 15176 | || ||||| ||| ||| | | |||||||||| | | | ||||| | Sbjct 2236 TCGGTAAGCAGTACCAGGCTTATTGAGCGGGAACATGGAGGCATCGGCATCATCGCCGGT 2295 Query 15177 GCAGACGATGCCGAGCACGGCCGTGGAGACCGTGCGAATCGGCCGGCCGCCTTCGTTGAT 15236 ||| || ||||| | | |||||| ||||| || | ||| ||| ||||| | Sbjct 2296 GCACACCATGCCCACAATCGCCGTGCTCACCGTCGTGATAGAGCGGGTGCCGTCGTTAAC 2355 Query 15237 TTCGATGAC-GCGTACGCCGTGGTGGTAATCCTGCGGCATGGTGTGCAGCTCCT 15289 ||| | || ||| |||||||| ||| || |||| ||||| || | ||||| Sbjct 2356 TTCTACAACAGCGCACGCCGTG--TGTAGTCTTGCGCCATGGAATGAATCTCCT 2407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 129652084372416