Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20maxima_20[genbank_20GCA_5F002006925.1_202017-03-07] 1,504 sequences; 345,757,338 total letters Query= NC_015273.1 Length=32317 Score E Sequences producing significant alignments: (Bits) Value seq1504 250 5e-62 >seq1504 Length=2444 Score = 250 bits (276), Expect = 5e-62 Identities = 766/1171 (65%), Gaps = 29/1171 (2%) Strand=Plus/Plus Query 12150 TTATGCCGTGACGCGCGCGGCGAAATCGGCGAGGTAACGGTCGGTGATGCGTTGGCGCAG 12209 |||||| | ||||| | || |||||| | ||||||||||| |||||||| |||||||| Sbjct 1223 TTATGCGCTTACGCGGGTGGTGAAATCCACCAGGTAACGGTCAGTGATGCGCTGGCGCAG 1282 Query 12210 CATCAGGTTTTCGATCGGCGGAACGGGCGTGTAGTCGTAATCGATCGCCAGCTTGCCGGC 12269 |||||||||||| | |||||| || ||||| |||||||| |||||| || || ||||| Sbjct 1283 CATCAGGTTTTCCAGCGGCGGCACTGGCGTATAGTCGTAGTCGATCCAGAGTTTCCCGGC 1342 Query 12270 CTTGAGCGAT-TCGACGGGGTTCGCGCTGTCGTCGTACCAAGCCGAGCCGCCGAGCAGAT 12328 || || | | || | ||| ||||||| || ||| ||||||| || | Sbjct 1343 TTTCAGGGCTGTCTTTGTCGTTAACGCTGTCATCAATCCAGCAATCACCGCCGATGAGGT 1402 Query 12329 AGCC--GTTTGCGATCAGCTCGCGGAATTTCGCGTTGATGCTTTCGATCATGTCTTTCAC 12386 |||| | || | ||| ||| | ||| ||| ||| | |||||| || || | Sbjct 1403 AGCCCTGATT---ACCAGGCTGCGCATTTTGGCGCGGATACCTTCGATAATATCGCGGGC 1459 Query 12387 GATCGACGGGTGCATCGGCTTGTCGACATAAACCATGTGTGCTTCCGCCATCGTGTCGGC 12446 | |||||||| | |||| | || || ||| || | || ||||| ||||| || Sbjct 1460 CAGCGACGGGTTAAGCGGCATATCCACCGCCCACATATGGCCCTCTGCCATGGTGTCAGC 1519 Query 12447 GAGCACTTGCGCGGTGCGCGTGTAGTTCTCGAATGCGAACAGCGGA-TCATCCGAGCAGG 12505 || || ||||||||||| |||||||| || || |||||||||| |||| | |||| Sbjct 1520 CAGTACCTGCGCGGTGCGGGTGTAGTTTTCAAACTGGAACAGCGGATTCAT-CACTCAGG 1578 Query 12506 -TGCGCGAACCCCAGAAGCGATAGCCCGTCGAGTTGATGAGCGTCGTCACATCGTTCTCG 12564 ||| |||||||||||||| | || | |||| | || || || ||||||| | Sbjct 1579 CAGCGGGAACCCCAGAAGCGGAAACCATCCTTCCTGATCAAGGTGGTGACGTCGTTCTGG 1638 Query 12565 TTGAGGTAGCCGGCATCGGTCGCGGGGTCTTGCAAGTCCCAGAAAACATCCTTGCTGATA 12624 || || |||||||| || || ||||| |||| |||||||| |||||| || || | Sbjct 1639 TTCAGCAGTCCGGCATCAGTTGCCGGGTCCTGCAGATCCCAGAACACATCC--GCAGACA 1696 Query 12625 --CCCGTAACGCCATTGATGCCGACATTCGAAATCGTCTTGTGCCAGCCCGTTTCCTCGT 12682 || || ||||| |||| ||| || || || | || ||||||||||| |||| ||||| Sbjct 1697 AGCCGGTTACGCCGTTGACGCC-ACGTTAGACAGGGTTTTGTGCCAGCCGGTTTGCTCGT 1755 Query 12683 CGA-TCTTGGCGCGCAAGCCGAGCGCGATCGCGGTCGCGTCNNNNNNNNNNNNNNNNNNN 12741 ||| | || |||||| |||| || ||| || || |||| Sbjct 1756 CGATTTTTAGCGCGC-AGCCAAGGGCGCGGGC-GTAGCGT-AGCGGTCGCATCCGCCTGC 1812 Query 12742 NNNNNNNTGTCCCATCCGAGGAAATCCGGCCACATCACCATCAGCTCGCGTTGGCTGAAT 12801 |||| | | ||| || ||||| || | ||| || || |||||||| Sbjct 1813 AGCACCGTGTCAAAGTTTATGAAGTCAGGCCAGATAATCATTCCTTCACGCTGGCTGAAG 1872 Query 12802 TGCTGGCGATAGGCCATCGCCGCTTCCTTGTTCGCCGCGCCGTTCGCCGACACATAGCCG 12861 | | ||| || | ||||| | || | | ||||| || |||| ||| | Sbjct 1873 TTGTCGCGGTAAGTGATCGCTCTTGCCACGGTTTTACAGCCGTAAGCTGACATATACGCA 1932 Query 12862 AACCCGCGCAGCTTTTGTGCGAGCGTGCCGAGGGCCGCCGCGACAGGCTGCGTATCGAGG 12921 || | ||||| | || || | || | || | | | || | ||||||||| | Sbjct 1933 AAGGCCCGCAGGCTCTGCGCCA-CGCTCACAGCTCAGTGGATACGGCCTGCGTATCATGC 1991 Query 12922 CCGGGAGCGCCG-AGAATGCGCGGCTTGATGCCGAGTTTCGATTGCGCCGAGAGTAGCGC 12980 || || ||||| ||||||||||| || | ||| || | ||| ||||| || |||||||| Sbjct 1992 CCCGGCACGCCGAAGAATGCGCGGTTTCACGCC-AGCTGCGACTGCGCGGAAAGTAGCGC 2050 Query 12981 TTGCATGCCCGTATAAGCGCCCGTCACGGC-GTCGGGTTTGCCGATCACGTTGCTCGNNN 13039 | |||||| || | |||| |||| ||| | |||||| | || | Sbjct 2051 CTTCATGCCGGT-TTTCTTACCGT--CGGCAGTCACG-CCGCCGATAATATTTGAGGTGG 2106 Query 13040 NNNNNNNNNNNNNNNNNCCTTCAGCGACGCGCACGACGACAGTGACGGG-CTTCGCCTGT 13098 || | || |||||||| || || |||||||| || ||||| Sbjct 2107 TTTCCGCTTCGGTTTCGCCCTGGGCAACGCGCACCACTACGGTGACGGGTTTTTGCCTGG 2166 Query 13099 GCGGCCATCGCTTGAAGCGTGCGCGCGAGCGTGCCCTTGTCGCCGGCCTTGCCGATCGCC 13158 | || ||||| | || | ||| || ||||| || ||||| || || ||| | || Sbjct 2167 TCTGCGATCGCGTCCAGTGAGCGGGCCAGCGTACCGGACTCGCCCGCTTTACCGCTGGCG 2226 Query 13159 GATTGAATGTTCGTCAGCAGCA-CGGGCGTATCGAGCGGGAACATCGAGGCGTCAGCATC 13217 | | | | || ||||| | | ||| ||| |||||||||||| ||||| || ||||| Sbjct 2227 GTCAGTACATCGGTAAGCAGTACCAGGCTTATTGAGCGGGAACATGGAGGCATCGGCATC 2286 Query 13218 GAGGGCGGTCGCGACGAGGCCGACAACGGCCGTTGATACGGTGCGAATCGGGCGCGTGCC 13277 | |||| || | ||| |||| ||||| || || || | ||| ||||| Sbjct 2287 ATCGCCGGTGCACACCATGCCCACAATCGCCGTGCTCACCGTCGTGATAGAGCGGGTGCC 2346 Query 13278 TTCGTTAATTTCGAGTAC-GCGCACGCCGTG 13307 ||||||| ||| | || |||||||||||| Sbjct 2347 GTCGTTAACTTCTACAACAGCGCACGCCGTG 2377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 103290955190592