Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20maxima_20[genbank_20GCA_5F002006925.1_202017-03-07] 1,504 sequences; 345,757,338 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq6 118 1e-21 seq1 118 1e-21 seq9 82.4 9e-11 >seq6 Length=23636167 Score = 118 bits (130), Expect = 1e-21 Identities = 149/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 48359 ACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACC 48418 |||||| ||||| | ||| | |||||||| ||| | || | | |||||||||||| || Sbjct 11061182 ACCTCCCTGATCCACATAACGGGCAGTATCATTAAACACCCGCAGCATTGGGACAATGCC 11061123 Query 48419 ATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGA 48478 ||| ||| | || || ||||| ||||||||||||| | || | || || || ||| Sbjct 11061122 ATTGGATGTCCCGTTTGTTCCACGAATATAACTTCCAGTTGCACGAATGTTGTGAACTGA 11061063 Query 48479 AATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAAT 48538 | ||| ||||| || || ||| || | ||||||| || | || ||||| || Sbjct 11061062 GACACCAATACCTCCAGCTGATTTGCTGATAACAGCACACTCCTTCAAAGTTTCATAGAT 11061003 Query 48539 TCCTTCTATACTATCATCTATCATA 48563 |||||| |||||||||||| ||||| Sbjct 11061002 TCCTTCAATACTATCATCTTTCATA 11060978 Score = 95.1 bits (104), Expect = 1e-14 Identities = 109/144 (76%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 48599 AGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTT 48658 |||||| | |||||| | ||| ||||||||||| | |||||| | | || | || | Sbjct 11060852 AGTTCCAGCATTAAAAAGTGTAGGAGATGCATGGGTGAACCATCTTTGGGACATCATATG 11060793 Query 48659 ATATGTTTCAATAACAGAATCTATATCC-CATTGATGTATACCTATAGATACACGCATTA 48717 ||||||| |||| ||||||| ||||| | ||| || || || ||||| || | ||| | Sbjct 11060792 GTATGTTTTAATAGCAGAATCAATATCATCCTTG-TGAATTCCAATAGAAACCCTCATCA 11060734 Query 48718 ACATATATTGAGGTCTTTCAACAA 48741 |||||| ||||||||||| |||| Sbjct 11060733 ACATATGCTGAGGTCTTTCTACAA 11060710 >seq1 Length=32082701 Score = 118 bits (130), Expect = 1e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 ||||||||||| | ||| | |||||||| ||| | || | | |||||| ||||| ||| Sbjct 28519932 CCTCCTTGATCAACATAACGGGCAGTATCATTAAACACCCGCAGCATTGGCACAATGCCA 28519873 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || ||| | ||||| ||||| |||||||||||| | || | || || || ||| Sbjct 28519872 TTAGATGTCCCATTTGTTCCACGAATATAACTTCCTGTTGCACGAATGTTGTGAACTGAG 28519813 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| ||||| || || ||| || | ||||||| || | |||||||| ||| Sbjct 28519812 ACACCAATACCTCCAGCTGATTTGCTGATAATAGCACACTCCTTCAAAGTATCATATATT 28519753 Query 48540 CCTTCTATACTATCATCTATCAT 48562 ||||| |||||||||||| |||| Sbjct 28519752 CCTTCAATACTATCATCTTTCAT 28519730 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 48600 GTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTA 48659 ||||| | |||||| | ||| ||||||||||| |||||||| | || | || | Sbjct 28519567 GTTCCAGCATTAAAAAGTGTGGGAGATGCATGGGTAAACCATCGTTGAGACATCATATGG 28519508 Query 48660 TATGTTTCAATAACAGAATCTATATC-CCATTGATGTATACCTATAGATACACGCATTAA 48718 ||||||| || ||||||| || || | ||| || || || | || || | ||| || Sbjct 28519507 TATGTTTTGATGGCAGAATCAATGTCATCCTTG-TGAATCCCAACAGCAACCCTCATCAA 28519449 Query 48719 CATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAA 48778 ||||| ||| |||||||| |||| ||| | | ||||| || || || | |||| Sbjct 28519448 CATATGTTGGGGTCTTTCTACAACTTTTCCTTGGACCTTCAAGAGGTAGGACCTCTCCAG 28519389 Query 48779 TGTTTTAAAACCAAAATA 48796 ||||| || |||||||| Sbjct 28519388 GGTTTTGAAGCCAAAATA 28519371 >seq9 Length=40397281 Score = 82.4 bits (90), Expect = 9e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 18961 CATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAA 19020 || ||||| |||||||| || ||||| |||||| ||| | || || || || || ||| Sbjct 3864694 CAAGCAAAGTCACAATGAAGCCCCTCATCTCTAGATATAAGCTCGTTTGAGAACGTCAAA 3864635 Query 19021 CCAGGCATCAGTCCTCttttttttAACCAGAATAT 19055 || ||||||||||| || ||||| | ||||||||| Sbjct 3864634 CCTGGCATCAGTCCCCTCTTTTTAAGCCAGAATAT 3864600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562098232354560