Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20maxima_20[genbank_20GCA_5F002006925.1_202017-03-07] 1,504 sequences; 345,757,338 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq6 109 4e-19 seq4 104 2e-17 seq3 95.1 9e-15 seq5 91.5 1e-13 seq2 89.7 4e-13 >seq6 Length=23636167 Score = 109 bits (120), Expect = 4e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||| | ||| || ||| ||| || ||||| || ||||||| || | | || Sbjct 4327086 AGGCGGAGCACAAGATGGAGAGTGGACTCCTTCTGAATGTTATAATCAGCTAAAGTACGG 4327027 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | |||||| || ||||| || || | ||| ||||| | |||| || ||| Sbjct 4327026 CCATCCTCAAGCTGCTTCCCAGCAAAGATGAGCCTCTGCTGATCTGGTGGAATCCCTTCC 4326967 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||||| || ||| | | | || ||||| ||||||||||| ||| Sbjct 4326966 TTGTCCTGAATCTTTGCCTTAACATTATCAATAGTATCTGAGCTCTCCACCTCCAGAGTA 4326907 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || ||||| || || ||||| |||||||| Sbjct 4326906 ATAGTCTTCCCAGTCAAGGTCTTGACAAATATCTGCAT 4326869 Score = 102 bits (112), Expect = 6e-17 Identities = 147/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 48563 ATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTG 48622 ||| || ||| ||| || ||||| |||||||||| ||| | || |||| || | ||| Sbjct 5507499 ATGGAGAGTGGACTCCTTCTGAATGTTGTAATCAGCAAGAGTACGGCCGTCCTCAAGCTG 5507440 Query 48623 CTTACCGGCAAATATCAGTCGCTGTTGATCCG-TGGGAACGCCCTCCTTGTCGCTAATCT 48681 ||| || || || || || | ||| ||||| | ||||| | || |||||||| ||||| Sbjct 5507439 CTTCCCAGCGAAGATGAGCCTCTGCTGATCAGGTGGGATC-CCTTCCTTGTCCTGAATCT 5507381 Query 48682 TTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCG 48741 | || ||| | | | || || ||||||||||| |||||||| || || | Sbjct 5507380 TGGCCTTGACATTGTCAATGGTATCCGAACTCTCCACCTCCAGGGTAATCGTCTTCCCGG 5507321 Query 48742 TCAAAGTTTTTACAAAAATCTGCAT 48766 |||| || || |||||||||||||| Sbjct 5507320 TCAATGTCTTGACAAAAATCTGCAT 5507296 Score = 98.7 bits (108), Expect = 8e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 48563 ATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTG 48622 ||| || ||| ||| ||||| || || ||||||| || | || |||| || | ||| Sbjct 4417241 ATGGAGGGTGGACTCCTTTTGGATGTTATAATCAGCAAGGGTACGGCCGTCCTCTAGCTG 4417182 Query 48623 CTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTT 48682 ||| || || || || || | ||| ||||| | |||| || |||||||| |||||| Sbjct 4417181 CTTCCCAGCGAAGATGAGCCTCTGCTGATCTGGTGGAATCCCTTCCTTGTCCTGAATCTT 4417122 Query 48683 TTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGT 48742 | || ||| | | | | || || ||||||||||| ||||| || || || || Sbjct 4417121 TGCCTTGACATTATCAATTGTATCAGAACTCTCCACCTCCAGAGTAATAGTCTTCCCAGT 4417062 Query 48743 CAAAGTTTTTACAAAAATCTGCAT 48766 |||||| || |||||||| ||||| Sbjct 4417061 CAAAGTCTTGACAAAAATTTGCAT 4417038 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 48563 ATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTG 48622 ||| || ||| ||| |||||||| || ||||||| || | | || | || || | ||| Sbjct 4424665 ATGGAGGGTGGACTCCTTTTGAATGTTATAATCAGCTAAAGTACGGCCATCCTCAAGCTG 4424606 Query 48623 CTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTT 48682 ||| || ||||| || || | ||| ||||| | |||| || ||||| || |||||| Sbjct 4424605 CTTCCCAGCAAAGATGAGCCTCTGCTGATCAGGTGGAATCCCTTCCTTATCCTGAATCTT 4424546 Query 48683 TTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGT 48742 || ||| | | | || || ||||||||||| ||||| ||||| || || Sbjct 4424545 AGCCTTGACATTGTCAATGGTATCAGAACTCTCCACCTCCAGGGTAATTGTTTTCCCAGT 4424486 Query 48743 CAAAGTTTTTACAAAAATCTGCAT 48766 | ||| || || ||||||||||| Sbjct 4424485 AAGAGTCTTGACGAAAATCTGCAT 4424462 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || || ||||||||||||| | | || |||| |||| ||||| || ||||| Sbjct 4326376 CTCCTTCTGGATATTGTAATCAGCCAAGGTGCGGCCGTCTTCCAGTTGCTTGCCAGCAAA 4326317 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 ||||| | ||| || |||| ||| | ||||||||||| |||||| || || Sbjct 4326316 GATCAGCCTCTGCTGGTCCGGGGGGATTCCCTCCTTGTCTTGAATCTTCGCCTTGACGTT 4326257 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | | ||||| ||| ||||| | || ||||| || || || | ||||| || Sbjct 4326256 ATCGATCGTGTCTGAGCTCTCAACCTCGAGGGTTATCGTCTTCCCGGTTAGGGTTTTGAC 4326197 Query 48755 AAAAATCTGCAT 48766 ||| |||||||| Sbjct 4326196 AAAGATCTGCAT 4326185 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 48563 ATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTG 48622 ||| || ||| || ||||| || || ||||||| || | || | || || | ||| Sbjct 4366704 ATGGAGGGTGGATTCCTTTTGGATGTTATAATCAGCAAGGGTACGGCCATCCTCTAGCTG 4366645 Query 48623 CTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTT 48682 ||| || || || || || | ||| ||||| | |||| || ||||| || |||||| Sbjct 4366644 CTTCCCAGCGAAGATGAGCCTCTGCTGATCTGGTGGAATCCCTTCCTTATCCTGAATCTT 4366585 Query 48683 TTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGT 48742 | || ||| | | | | || || ||||||||||| ||||| || || || || Sbjct 4366584 TGCCTTGACATTATCAATTGTATCAGAACTCTCCACCTCCAGAGTAATAGTCTTCCCAGT 4366525 Query 48743 CAAAGTTTTTACAAAAATCTGCAT 48766 |||||| || |||||||| ||||| Sbjct 4366524 CAAAGTCTTGACAAAAATTTGCAT 4366501 >seq4 Length=29346085 Score = 104 bits (114), Expect = 2e-17 Identities = 122/165 (74%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 9075 GATTTGTTCACAAATTAATTGAGCAATCCTGTCCCCCTTATTCACGACAAAGTCTGTGTC 9134 ||||| ||| |||||||||||||| || || ||| | ||||| |||| || || Sbjct 17238488 GATTTTCTCAATTATTAATTGAGCAATTCTATCACCCCTTTTCACCTCAAAATCAACATC 17238429 Query 9135 GGAATGATTGAACAGCACCACTCCCACGTTACCCCTGTAATCCTCATCGATCACACCAGC 9194 |||||||| |||| | ||| || || ||||||||||||| |||| ||||| || || Sbjct 17238428 AGAATGATTAAACAAAATCACCCCAACAGGACCCCTGTAATCCGCATCAATCACCCCGGC 17238369 Query 9195 ACCCACGTCGATGAAGTGCTTGACCGCTAGTCCAGAGCGGGGCGC 9239 |||||||| || ||||||| ||| ||||| || | ||||| Sbjct 17238368 TCCCACGTCCATTGAGTGCTTCCACGCCAGTCCTGATCTCGGCGC 17238324 >seq3 Length=30666748 Score = 95.1 bits (104), Expect = 9e-15 Identities = 120/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 9075 GATTTGTTCACAAATTAATTGAGCAATCCTGTCCCCCTTATTCACGACAAAGTCTGTGTC 9134 ||||| ||| |||||||||||||| || || ||| ||||| |||| || || Sbjct 28230096 GATTTTCTCAATTATTAATTGAGCAATTCTATCACCCACTTTCACCTCAAAATCAACATC 28230037 Query 9135 GGAATGATTGAACAGCACCACTCCCACGTTACCCCTGTAATCCTCATCGATCACACCAGC 9194 |||||||| |||| | ||| || || |||||||||||| |||| ||||| || || Sbjct 28230036 AGAATGATTAAACAAAATCACCCCAACAGGGCCCCTGTAATCCGCATCAATCACCCCGGC 28229977 Query 9195 ACCCACGTCGATGAAGTGCTTGACCGCTAGTCCAGAGCGGGGCGC 9239 |||||||| || ||||||| ||| ||||| || | ||||| Sbjct 28229976 TCCCACGTCCATTGAGTGCTTCCACGCCAGTCCCGATCTTGGCGC 28229932 >seq5 Length=49531769 Score = 91.5 bits (100), Expect = 1e-13 Identities = 154/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 ||||| | ||||| || || || ||| || || |||||||| || | | |||| Sbjct 45288713 AGCCGAAGCACCAGGTGCAGAGTCGACTCCTTCTGGATATTGTAGTCGGCCAAGGTTCGC 45288654 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| || | |||||| ||||| || || || ||||| || |||| || | ||||||| Sbjct 45288653 CCGTCTTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGTGGGATGCCCTCC 45288594 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || || | | | || || | ||||||||||| ||| Sbjct 45288593 TTGTCCTGGATCTTCGCCTTGACGTTGTCGATTGTGTCGGAGGACTCCACCTCCAACGTT 45288534 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTGT 48771 || || || ||||| | ||||| || || ||||||||| ||| Sbjct 45288533 ATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCATCTTGT 45288491 >seq2 Length=53008150 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || || |||||||| |||| | | | || | || |||| |||||| |||||||| Sbjct 27083168 CTCCTTCTGGATATTGTAGTCAGCCAAAGTACGCCCATCCTCCAGCTGCTTCCCGGCAAA 27083227 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 |||| | ||| ||||| | |||| || |||||||| || || || ||| Sbjct 27083228 AATCAACCTCTGCTGATCTGGAGGAATCCCTTCCTTGTCCTGGATTTTAGCCTTCACATT 27083287 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | | ||||| ||| ||||||| || || |||||||| ||||| || || || Sbjct 27083288 ATCAATGGTGTCTGAACTCTCAACCTCCAGGGTGATGGTTTTTCCTGTCAATGTCTTCAC 27083347 Query 48755 AAAAATCTGCAT 48766 ||||||||||| Sbjct 27083348 GAAAATCTGCAT 27083359 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | |||||| || || || || || ||||| ||||| |||| || | || Sbjct 27084054 AGGCGAAGCACCAAGTGAAGGGTAGATTCCTTCTGAATGTTGTAGTCAGCAAGGGTACGG 27084113 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | |||||| || ||||| ||||||| ||||||||| | || | ||||||| Sbjct 27084114 CCATCTTCTAGCTGCTTTCCAGCAAAAATCAGTCTCTGTTGATCAGGTGGGATGCCCTCC 27084173 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | | || || || ||||||| || Sbjct 27084174 TTGTCCTGGATCTTGGCCTTGACATTGTCGATCGTGTCAGAGCTTTCAACCTCCAAAGTT 27084233 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || |||| ||||| |||||||||||||| Sbjct 27084234 ATAGTCTTACCAGTCAGGGTTTTCACAAAAATCTGCAT 27084271 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | |||||| || || || ||| || || || ||||| |||| |||| | || Sbjct 27087679 AGACGGAGCACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCAGCTAGAGTACGG 27087738 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | || || || ||||| |||| || ||| ||||| | || | ||||||| Sbjct 27087739 CCATCTTCAAGTTGTTTGCCAGCAAAGATCAATCTCTGCTGATCGGGAGGGATGCCCTCC 27087798 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| || ||| | | | || || || ||||||| || Sbjct 27087799 TTGTCCTGAATCTTAGCCTTGACATTGTCGATTGTGTCAGAGCTTTCAACCTCCAAAGTT 27087858 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || |||| ||||| |||||||||||||| Sbjct 27087859 ATAGTTTTACCAGTCAGGGTTTTCACAAAAATCTGCAT 27087896 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613 |||||||||||| | ||| || || ||||| |||||||| | || | | | || Sbjct 27083375 CAACACCAAATGCAATGTGGATTCCTTCTGAATGTTGTAATCTGCAAGGGTCCTCCCATC 27083434 Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 || | |||||| || ||||| |||| | ||| || || | |||| ||||||||| || Sbjct 27083435 TTCAAGCTGCTTGCCTGCAAAAATCAACCTCTGCTGGTCTGGTGGAATGCCCTCCTTATC 27083494 Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733 ||||| || ||| | | | | || || ||| ||||||| || || || Sbjct 27083495 TTGGATCTTGGCCTTCACATTATCAATCGTGTCCGAACTCTCTACCTCCAGAGTGATTGT 27083554 Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||||| || | ||| || |||||||| ||||| Sbjct 27083555 TTTTCCAGTGAGAGTCTTCACAAAAATTTGCAT 27083587 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||||||| || || ||| || || || ||||| |||| ||| | ||| Sbjct 27127317 AGACGAAGCACCAAATGAAGGGTTGACTCCTTCTGGATGTTGTAGTCAGCAAGAGTACGA 27127376 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | || || |||||||| || | | ||||||||| | || | ||||||| Sbjct 27127377 CCATCTTCGAGTTGTTTGCCGGCAAAGATTAACCTCTGTTGATCAGGTGGGATGCCCTCC 27127436 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | | || || || ||||||| || Sbjct 27127437 TTGTCCTGGATCTTGGCCTTGACATTGTCGATCGTGTCAGAGCTTTCAACCTCCAAAGTT 27127496 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || |||| ||||| |||||||||||||| Sbjct 27127497 ATAGTCTTACCAGTCAGGGTTTTCACAAAAATCTGCAT 27127534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380930617413792