Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20maxima_20[genbank_20GCA_5F002006925.1_202017-03-07] 1,504 sequences; 345,757,338 total letters Query= NC_019488.1 Length=34117 Score E Sequences producing significant alignments: (Bits) Value seq1504 2062 0.0 >seq1504 Length=2444 Score = 2062 bits (2286), Expect = 0.0 Identities = 1861/2294 (81%), Gaps = 39/2294 (2%) Strand=Plus/Minus Query 27101 ATGGCTCAGGATTACCACCACGGGGTGCGC-GTTGTTGAAATCAACGAGGGCACCCGACC 27159 ||||| || || ||| ||||| |||||| ||||| ||| | ||||| |||||||| | Sbjct 2393 ATGGCGCAAGACTACA--CACGGCGTGCGCTGTTGTAGAAGTTAACGACGGCACCCGCTC 2336 Query 27160 TATTACCACGGTGAGCACTGCCATCGTGGGCATGGTCTGCACCGGCGATGATGCTGATGC 27219 ||| || ||||||||||| || || ||||||||||| ||||||||||||||||| ||||| Sbjct 2335 TATCACGACGGTGAGCACGGCGATTGTGGGCATGGTGTGCACCGGCGATGATGCCGATGC 2276 Query 27220 GTCCGTGTTCCCCCTCAATAAGCC-GGTCCTGCTGACTGATGTGCTCACCGCCAGCGGTA 27278 ||| ||||||| ||||||||||| ||| ||||| || ||||| || ||||||||||||| Sbjct 2275 CTCCATGTTCCCGCTCAATAAGCCTGGTACTGCTTACCGATGTACTGACCGCCAGCGGTA 2216 Query 27279 AAGCGGGGGAGTCCGGCACGCTGGCCCGCTCGCTGGACGCGATTGCAGATCAGGCAAAA- 27337 ||||||| |||||||| |||||||||||||| ||||||||||| ||||| ||||||||| Sbjct 2215 AAGCGGGCGAGTCCGGTACGCTGGCCCGCTCACTGGACGCGATCGCAGACCAGGCAAAAA 2156 Query 27338 CCCGTGACTGTCGTTGTGCGTGTGGCGCAGGGCGAAACCGAAGCGGAAACCACCTCCAAT 27397 ||||| || || || ||||| || || ||||||||||||||||||||||||||||| ||| Sbjct 2155 CCCGTCACCGTAGTGGTGCGCGTTGCCCAGGGCGAAACCGAAGCGGAAACCACCTCAAAT 2096 Query 27398 ATTATCGGCGGCGTAACTTCCGACGGTAAGAAAACGGGCATGAAAGCGCTACTGTCGGCG 27457 |||||||||||||| ||| |||||||||||||||| |||||||| |||||||| || ||| Sbjct 2095 ATTATCGGCGGCGTGACTGCCGACGGTAAGAAAACCGGCATGAAGGCGCTACTTTCCGCG 2036 Query 27458 CAGTCGCAGCTCGGTGTCAAGCCGTGCATTCTTGGG-GTGCCGGGACATGACACTCAGGC 27516 ||||||||||| || || || ||| |||||||| || |||||||| ||||| || ||||| Sbjct 2035 CAGTCGCAGCT-GGCGTGAAACCGCGCATTCTTCGGCGTGCCGGGGCATGATACGCAGGC 1977 Query 27517 CGTTGCTACTGAACTGCTGGGCGTGGCGCAAAGCTTGCGCGGGTTTGCCTACCTTGCTGC 27576 ||| | ||||| ||| || |||||||||| ||| |||| | ||||| || | | || Sbjct 1976 CGTATCCACTGAGCTG-TGAGCGTGGCGCAGAGCCTGCGGGCCTTTGCGTATATGTCAGC 1918 Query 27577 TAATGGCTGCAAAACGGTGGAGGAAGCTATTGCCTATCGCGAGAATTTCAGTCAGCGCGA 27636 | | ||||| ||||| |||| ||| || | || ||||| || ||||| ||||| || Sbjct 1917 TTACGGCTGTAAAACCGTGGCAAGAGCGATCACTTACCGCGACAACTTCAGCCAGCGTGA 1858 Query 27637 GGGAATGCTGATCTGGCCTGACTTCATCAACTTTGACACCGTGCTGAAAGCAGACGCGAC 27696 |||||| | ||||||||||||||||| ||||||||||| |||||| | || || ||||| Sbjct 1857 AGGAATGATTATCTGGCCTGACTTCATAAACTTTGACACGGTGCTGCAGGCGGATGCGAC 1798 Query 27697 GGCTTACGCCTCCGCCCGTGCGCTCGGCCTGCGTGCCAAAA-TCGACGAGCAGATCGGCT 27755 ||| |||| | |||||| || || ||| |||| || |||| |||||||||| | ||||| Sbjct 1797 CGCT-ACGC-TACGCCCGCGCCCTTGGC-TGCGCGCTAAAAATCGACGAGCAAACCGGCT 1741 Query 27756 GGCATAAAACCCTGTCCAATGTGGGTGTGAACGGTGTCACCGGCATTTCCGCTGATGTGT 27815 |||| ||||||||||| || |||| || ||||| || |||||| | || || ||||||| Sbjct 1740 GGCACAAAACCCTGTCTAACGTGGC-GTCAACGGCGTAACCGGCTTGTCTGCGGATGTGT 1682 Query 27816 TCTGGGATCTGCAGGACCCGGCAACCGATGCGGGACTGCTGAACAAAAATGACGTCACCA 27875 ||||||||||||||||||||||||| ||||| |||||||||||| | || |||||||||| Sbjct 1681 TCTGGGATCTGCAGGACCCGGCAACTGATGCCGGACTGCTGAACCAGAACGACGTCACCA 1622 Query 27876 CATTGATCCGCAAAGACGGCTTCCGCTTCTGGGGTTCCCGTTGTCTCAGTGACGA-TCCG 27934 | |||||| | || || || |||||||||||||||||||| || || ||||| || |||| Sbjct 1621 CCTTGATCAGGAAGGATGGTTTCCGCTTCTGGGGTTCCCGCTGCCTGAGTGATGAATCCG 1562 Query 27935 CTGTTTGCTTTTGAGAACTACACCCGTACGGCGCAGGTGCTGGCTGACACTATGGCGGAG 27994 ||||| ||||| ||||||||||| || |||||||| ||||||||||| ||||| ||| Sbjct 1561 CTGTTCCAGTTTGAAAACTACACCCGCACCGCGCAGGTACTGGCTGACACCATGGCAGAG 1502 Query 27995 GCGCACATGTGGGCGGTGGATGGCGTGCTTAATCCGTCGCTGGCCCGCGACATTATTGAA 28054 | || ||||||||||||||| |||||| ||||||||||||||||| ||||| ||| Sbjct 1501 GGCCATATGTGGGCGGTGGATATGCCGCTTAACCCGTCGCTGGCCCGCGATATTATCGAA 1442 Query 28055 GGACTACGCGCCAAGATGCGCAGTCTGGTCAACCAGGGATACCTGATTGGTGGTGACTGC 28114 || | |||||||| |||||||| ||||| || ||||| ||||| || || ||||| ||| Sbjct 1441 GGTATCCGCGCCAAAATGCGCAGCCTGGT-AATCAGGGCTACCTCATCGGCGGTGATTGC 1383 Query 28115 TGGCTGGATGAGTCTGTTAACGATAAAGAC-GCCCTTAAAGCCGGGAAACTGACCATCGA 28173 ||| | ||||| |||||||| |||||| ||||| |||||||||||||| ||||| Sbjct 1382 TGGATTGATGACAGCGTTAACGACAAAGACAGCCCTGAAAGCCGGGAAACTCTGGATCGA 1323 Query 28174 TTATGACTACACGCCGGTGCCTCCGCTTGAAAACCTGATGCTGCGCCAGCGCATCACCGA 28233 || ||||| ||||| ||||| ||||| ||||||||||||||||||||||||||||| || Sbjct 1322 CTACGACTATACGCCAGTGCCGCCGCTGGAAAACCTGATGCTGCGCCAGCGCATCACTGA 1263 Query 28234 TCGTTACCTGGTCGATTTTGCCAGCCGTGTCGCTGCATAAGGGGGAATCATGGCTTTACC 28293 ||||||||||| ||||| ||| ||| || |||||||||||| |||||| ||||| Sbjct 1262 CCGTTACCTGGTGGATTTCACCACCCGCGTAAGCGCATAAGGGGGACCCATGGCCTTACC 1203 Query 28294 ACGCAA-GTTAAAACACCTGAACCTGTT-CAACGACGGGAACAACTGGCAGGGGATCGTT 28351 |||||| | |||||||||||||| | || ||||| ||| |||| ||| ||| || | | Sbjct 1202 ACGCAAAGCTAAAACACCTGAACATCTTTCAACGCCGGTAACA-CTGAT-GGGCATTGCT 1145 Query 28352 GAGTCTCTGACCCTGCCGAAATTTACCCGCAAGTTTGAGAAGTATCGCGGCGGCGG-TAT 28410 || || | ||||||||||||||| |||||||| ||||||| |||||||| ||||| ||| Sbjct 1144 GAATCCGTCACCCTGCCGAAATTTTCCCGCAAGCTTGAGAACTATCGCGG-GGCGGCTAT 1086 Query 28411 GCCGGGCGCAGTGGATGTGGACATGGGGCTGGATGACGGTGCACTGGACACGGAATTTTC 28470 ||| || |||| | | | || ||||||||||||| || |||||||| |||||| | | Sbjct 1085 GCCCGGTTCAGTCGGTATCGATCTGGGGCTGGATGATGGCGCACTGGA-ACGGAAATGAC 1027 Query 28471 AATCGGCGGTACCGAGCTGCTGTTATTCAAGCAGATGGGCAAGGCAACCGTTGACGGCAT 28530 |||||||| || ||| ||| | || || ||||||| |||||| || || |||||| | Sbjct 1026 CATCGGCGGCACTGAGGCACTGCTGTTTAAACAGATGG-CAAGGCCACGGTGGACGGCGT 968 Query 28531 CCAGCTGCGTTTCACCGGTTCCATTCAGCGTGACGATACCGGCGAAGT-GCAGGCCGTTG 28589 ||| |||| |||||||| || || ||||| || || |||||||| || ||||||||||| Sbjct 967 GCAGATGCGCTTCACCGGCTCTATCCAGCGCGATGACACCGGCGAGGTTGCAGGCCGTTG 908 Query 28590 AGCTGGTTGTGC-GCGGGCGCCATAAAGAAGTGGATTCCGGCGAGTGGAAAACCGGCGAG 28648 |||||||||| | |||| ||||| ||||| |||||||||||||||||||||||||||||| Sbjct 907 AGCTGGTTGTACCGCGGACGCCACAAAGAGGTGGATTCCGGCGAGTGGAAAACCGGCGAG 848 Query 28649 AGCAGCAGCACCAAAGTCAGCAGTACCAACAGCTACGCGAAGCTGACCATTAATGGTGAG 28708 |||| | ||||||||||||||| |||||||| ||||||||||||||||| || ||| Sbjct 847 AGCAATACCACCAAAGTCAGCAGCGTTAACAGCTATGCGAAGCTGACCATTAACGG-GAG 789 Query 28709 GTGCTCTATGAGGTCGATCTGG-TCAACATGGTAGAAATCGTTGGCGGCATGGACCTGAT 28767 ||||| || ||||||||| || |||||||| | ||||| |||| ||| | |||||||| Sbjct 788 GTGCTGTACGAGGTCGATGTGAATCAACATGATTGAAATTGTTGATGGCGTTGACCTGAT 729 Query 28768 GGAAGAACACCGTAATGCCCTCGGCCTCTGATTAACCTTAACGGCGCGGGCAGCCGCGCC 28827 |||||||||||| || ||| ||||||| | | | | || ||||| | |||||||| Sbjct 728 GGAAGAACACCGCAACGCCATCGGCCTTTAAATG--CAGCACTGCGCGCGATGCCGCGCC 671 Query 28828 AGTATTTCATTAACAGGATACGAACATGAGCGACAAGCTGACTGAAAAGACCGTAAAACT 28887 || | |||||||| | || |||||| || || || | | || || || || Sbjct 670 AGCCACCCCATAACAGGAAAAGAGCATGAGTGAGAAA---ACAGTAGCAACGGTGAAGCT 614 Query 28888 GGATACTCCCATCATGCGC-GGTAAAGCTGAAATTACCGAAATTGTGCTGCGCAAGCCTC 28946 ||||| || || | ||| ||| | || ||||| |||||||||||||| || || | Sbjct 613 GGATAGCCCTATTAAGCGTTGGTGATGCCACGATTACGGAAATTGTGCTGCGTAAACCGC 554 Query 28947 AGTCCGGCGCACTGCGTGGCACCCGTCTGCAGGCCATTATGGATATGGACGTGGGCGCAA 29006 | |||||||||||||| || || || |||||||| | ||||| |||||||||| | ||| Sbjct 553 AATCCGGCGCACTGCGCGGTACGCGGCTGCAGGCGGTGATGGAGATGGACGTGGCCTCAA 494 Query 29007 TGATGACTGTGATTCCACGAATCTCCACCCCGACGCTGACCGCGCAGGAAATGGCAGAGC 29066 ||||||| ||||| || || |||||||| |||||||||||| ||||||||||||| || | Sbjct 493 TGATGACCGTGATCCCCCGTATCTCCACGCCGACGCTGACCCCGCAGGAAATGGCGGACC 434 Query 29067 TGGACCCCGCCGATCTCACCGCGCTGTCGGTAGAGGTGGTGACTTTTTTGTTGCCGAGGT 29126 | ||||| || || || ||||| ||||| | |||||||| |||||||||||||| || Sbjct 433 TCGACCCGGCAGACCTGGCCGCGATGTCGATCGAGGTGGTCCTTTTTTTGTTGCCGAAGT 374 Query 29127 CGGTGCTTGCCGGTTTACCGACAGCCTGACGATTGATGATCTTGTGGCGGACATCGCCAC 29186 ||| ||||||| ||| |||||||||||||| | ||||| || ||||| || |||||||| Sbjct 373 CGG-CCTTGCCGATTTGCCGACAGCCTGACGGTAGATGACCTGGTGGC-GATATCGCCAC 316 Query 29187 CATCTTTCACTGGTCGCCATCCATCACTGACGTTATGCCGCTGAC-TGAGGTGCTGGCGT 29245 |||||||||||| |||| ||| ||||||||||||||||||| || || ||||||| || Sbjct 315 GATCTTTCACTGGCCGCCGTCCGTCACTGACGTTATGCCGCTTACAGGAAGTGCTGGAGT 256 Query 29246 GGCGGCATAAGGCAATTCAGCGAAGCGGGGCCAGCGATGAGTGACAACAACCTGCGTCTG 29305 ||| ||| | || || ||||||||||||||||||||||||| || |||||||||||| Sbjct 255 GGC-GCACAGAGCGATAATGCGAAGCGGGGCCAGCGATGAGTGATAAAAACCTGCGTCTG 197 Query 29306 CAGGTGATTCTTAATGCGGTTGACAAGCTCACCCGCCCATTTCGATCCGCGCAGGCCAGC 29365 |||||| |||| ||||||||||| |||||||||||||| ||| | |||||||| | Sbjct 196 CAGGTGGTTCTGAATGCGGTTGATAAGCTCACCCGCCC-TTTAAAGTTGCGCAGGCTGGT 138 Query 29366 TCAAAAGAGCTGGC 29379 || || |||||||| Sbjct 137 TCTAAGGAGCTGGC 124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 109050852316992