Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20maxima_20[genbank_20GCA_5F002006925.1_202017-03-07] 1,504 sequences; 345,757,338 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq7 100 5e-16 seq1 100 5e-16 >seq7 Length=22269817 Score = 100 bits (110), Expect = 5e-16 Identities = 362/562 (64%), Gaps = 11/562 (2%) Strand=Plus/Plus Query 48127 CATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCA 48186 || ||| || || || | ||| | || || || || ||| | | |||| ||||| Sbjct 8165151 CAGGCACGCGAAATCGCAGTGGAGACCCTCATCTCGAGAGATCAACTCGTTTGAGAATGT 8165210 Query 48187 GAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAA 48246 | || ||||| | ||| | || ||||||||| || || || ||| || ||||| Sbjct 8165211 TAATCCCGGCATTAACCCGCGCTTTTTGAGCCAAAATATCGCGCAAAAACTCCCTGAGAA 8165270 Query 48247 GAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTC 48306 ||| || |||||||| || |||||| | | ||||| |||||| | ||| Sbjct 8165271 GAAAATCCCCTCCACGCAAGCAAACGCGATTAATCTCTCCGCGAAAGTCTCCGAGCCGTC 8165330 Query 48307 TGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGC 48366 |||||| | |||||| || ||||| || ||| || | |||||| ||||| Sbjct 8165331 ---GATCCAATTTAACGCCCACGTGGCTTTCTTTGCGACGCAGGGAACCGTCTCGATGGC 8165387 Query 48367 CCGGAAGAGC---TTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGC 48423 | ||||| ||||| || | | ||| | || || || ||| | Sbjct 8165388 GTGAAAGAGACGGTTCTTT---TCGTCGGAGTCTTTGATGTAAGTTTCTAGAAGCAGCGA 8165444 Query 48424 GTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTC 48483 |||||| || ||||| | ||||| || ||||| ||||| ||||||||||| | ||||| Sbjct 8165445 GTACATTTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCACGCGCCTC 8165504 Query 48484 AAACACCTGCACTTCTGTGGAGAATCTCTCCAGC-AGATTCTCATTGACTATCCCATCTG 48542 ||||| || || || ||| || ||| || || ||||| ||| || || || | Sbjct 8165505 GGCGACCTGGACCTCCGTCATGAACCT-TCCGGCGAGGTTCTCGAGGACGATGCCGTCGG 8165563 Query 48543 AAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCAT 48602 | || || |||||||| || || || | | ||| || ||||| ||| || || | Sbjct 8165564 AGGCTGCGAAGAAGGCGAGCACGTGCGTGACGAAGTGCTTCTCGTCAGCGGTTAGGGCCT 8165623 Query 48603 TCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTG 48662 |||| | | |||| || || ||||| || | ||||| || ||||| | Sbjct 8165624 CCCAGTGGCGGAGATCTTGCGAAAGATCAACTTCCTCAGCGGTCCAAAACGACGCTTCGG 8165683 Query 48663 CTTTTTTGTACATGCCCCATAT 48684 |||| |||||||| |||| || Sbjct 8165684 CTTTCTTGTACATTTCCCAAAT 8165705 >seq1 Length=32082701 Score = 100 bits (110), Expect = 5e-16 Identities = 421/659 (64%), Gaps = 18/659 (3%) Strand=Plus/Minus Query 48041 AACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTTAACGCGGGACTCTGAGGGT 48100 |||||| ||||||||| ||| || ||| ||| ||| ||| ||||| ||| | Sbjct 31016768 AACTCCCTCTCTATCTCCACCGCCTCCTTCACTATCCCCTTCACGCGCTCCTCGCTTAAT 31016709 Query 48101 TTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCC 48160 ||||| | ||| || || | || ||| || || || | ||| | ||||| || Sbjct 31016708 TTGTTCCTCAGCAAGCTG---TACAACAAGCACGCGAAATCGCAGTGGAGTCCTTCATCT 31016652 Query 48161 CGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAG 48220 || ||| ||| |||| |||||| || || ||||| | ||| | || ||| | ||| Sbjct 31016651 CGCGAGATTAGCTCGTTCGAGAAGGTTAGGCCCGGCATTAACCCGCGCTTTTTCAACCAA 31016592 Query 48221 AAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGC 48280 || || || |||| ||| |||||||| || || ||||| || ||||| | || Sbjct 31016591 AATATCGCGCAGAAACTGCCCGAGAAGAATATCCCTTCCACGCAAGCAAACGCTATCAGT 31016532 Query 48281 CTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTC 48340 ||||| |||| | | ||| |||||| || ||||| || ||||| || Sbjct 31016531 CTCTCCGCGAATGTCTCCGAGCCGTC---GATCCAATTTAGGGCCCAATCGGCCTTTTTG 31016475 Query 48341 TTGATGCATGGCATCGTCTCTATGGCCCGGAAGA---GCTTCTTGCACTCACCTGCGTCC 48397 | ||| |||| || || | ||| || || | | |||| || | | || Sbjct 31016474 GCAACGCACGGCACAGTTTCAAAGGCGCGAAATAAGCGGCTCTTT---TCGTCGGAGTTT 31016418 Query 48398 GCAACATAGGTAGTGAGCAGCTTTGCGTACATCTCAGAGTGCACATTCTCTATAGCGATC 48457 | || || || || | |||||| || ||||| | ||||| || ||||| Sbjct 31016417 TTTATGTACGTTTCTAGAAGGAGCGAGTACATTTCGGAGTGGATGTTCTCGATGGCGATT 31016358 Query 48458 TGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGC 48517 ||||| ||||||||||| | ||||| | || || | |||| | ||| || | Sbjct 31016357 TGGAAGCCGTAGAAGGCACGCGCCTCGGAGACTTGGATTTCTTTCATGAACCTGGCGGCG 31016298 Query 48518 AGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAA 48577 || || || ||| || ||||| || || || |||||||| || || || | | ||| Sbjct 31016297 AGGTTTTCGAGGACGATTCCATCCGAGGCGGCGAAGAAGGCGAGCACGTGCGTGATGAAG 31016238 Query 48578 TGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCT---GTACGTCTTTGCCCAGGTCCACT 48634 || ||||| | || || | ||||| | || | | ||| | |||||| || Sbjct 31016237 TGTTTCTCGTCGGCCGTTAG-GGATTCC--CACTGGCGGATGTCCTGCGACAGGTCAACC 31016181 Query 48635 TCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTACATGCCCCATATGTCCGGATA 48693 || ||| | ||||| || || || ||||| |||||||| |||| || ||||| || Sbjct 31016180 TCCTCCGCCGTCCAAAATGAAGCTTCGGCTTTCTTGTACATTTCCCAGATTTCCGGGTA 31016122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931515287183360