Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20maxima_20[genbank_20GCA_5F002006925.1_202017-03-07] 1,504 sequences; 345,757,338 total letters Query= NC_019932.1 Length=29564 Score E Sequences producing significant alignments: (Bits) Value seq1504 737 0.0 >seq1504 Length=2444 Score = 737 bits (816), Expect = 0.0 Identities = 1584/2290 (69%), Gaps = 102/2290 (4%) Strand=Plus/Plus Query 24724 GCCTGCACCGCTTTAAAGGGACGCGTCGCCTGGTCTACCGCTTTCAGCAGCACCTGCAGT 24783 |||||| | |||||||||| || || || || ||||| ||||| | ||||||||| Sbjct 142 GCCTGCGCAACTTTAAAGGG-CGGGTGAGCTTATCAACCGCATTCAGAACCACCTGCAGA 200 Query 24784 TTGAGGTTGTTA---CTCATCCGGGGATACTCCGCTGCGCATCAGGGCTTTGTGCCGCCA 24840 ||||| ||| |||||| || | ||||| ||||| | ||| ||||| |||| Sbjct 201 CGCAGGTTTTTATCACTCATCGCTGG---CCCCGCTTCGCATTATCGCTCTGTGC-GCCA 256 Query 24841 GTCCAGTAACTCG-GCCAGCGGCATGTCGTACATTTCAGACGGGGGCCAGTGAAAGATGA 24899 ||||| | || | |||||||| ||| | | ||||| |||||||||||||| Sbjct 257 CTCCAGCACTTCCTGTAAGCGGCATAACGTCAGTGACGGACGGCGGCCAGTGAAAGATCG 316 Query 24900 CCGCAACGTCGGCCATCAGGTCATTCACGGTCAGGCT-TCGGGGCCAGTCTTGTCGGCCG 24958 || | ||| ||| |||||||| || |||||||| |||| | | || ||||| Sbjct 317 TGGCGATATCG-CCACCAGGTCATCTACCGTCAGGCTGTCGG--CAAATCGGCAAGGCCG 373 Query 24959 ACTTCGGCAACAAAAAACCGATCACTTTCCCGCCCAGCGTAATCAGGTCAACCGGATCGA 25018 ||||||||||||||||| || ||| | || || |||||| |||| |||| Sbjct 374 ACTTCGGCAACAAAAAAAGGACCACCTCGATCGACATCGCGGCCAGGTCTGCCGGGTCGA 433 Query 25019 GGTTTAGGCACT--CTGATTTCGTCAGTGCAGGCAGGGTAATGCGCGGCAGCACGGACAG 25076 ||| | || | ||| ||||| | ||| || || || || | ||||| || Sbjct 434 GGTCC-GCCATTTCCTGCGGG-GTCAGCGTCGGCGTGGAGATACGGGGGATCACGGTCAT 491 Query 25077 CAGGGCGTCCACGTCCGAGGCGCACAGGTCAGCCAGCCGCACGCCGCGCAGCGCGCCCGC 25136 || | | |||||||| | || | ||||||| |||||||| ||||| | Sbjct 492 CATTGAGGCCACGTCCATCTCCATCACCGCCTGCAGCCGCGTACCGCGCAGTGCGCCGGA 551 Query 25137 GTTGGGCTTAAACAGTTCCACCTGGCTGATTTCGGTCTCGCCA-CGTTTCAGCGGGGTTT 25195 | || ||| ||| | | | | || || || ||| || || | ||| | | Sbjct 552 TTGCGGTTTACGCAGCACAATTTCCGTAATCGTGGCATCACCAACGCTTAATAGGGCTAT 611 Query 25196 CCAGGATGATCACGTTTTCGTTCTGTTCCATTTTCGTTACTC--GCAATAGTCAGGTTTA 25253 |||| | ||| || | | ||||| ||| | |||| || | || ||| | Sbjct 612 CCAGCTT---CACCGTTGC-TACTGTT-----TTC-TCACTCATGCTCTTTTCCTGTT-A 660 Query 25254 TTCAG-GGCCAGCGCCGGGCGCTGGCGTCAGGGTTACATC---AGGCCGAGGTTTTTGCG 25309 | | ||| |||| || | ||| ||| | | ||| ||||||| | ||||| Sbjct 661 TGGGGTGGCTGGCGC-GGCATCGCGCG-CAGTGCTGCATTTAAAGGCCGATGGCGTTGCG 718 Query 25310 GCGCTGCTCCAGCAGGTCGGTGCCGTCCACCTTTTCAATCATGTTGATGGTG-TCGATCT 25368 | | | |||| |||||| ||| || || |||||||||||||||| |||| || Sbjct 719 GTGTTCTTCCATCAGGTCAACGCCATCAACAATTTCAATCATGTTGATTCACATCGACCT 778 Query 25369 CCATCAGCTCTTTGCCGTCCCACGTCAGGCGGAAATAGGTGTTTTTGGTGGTGATTTTGG 25428 | |||| | | |||| ||||| |||| |||| | || ||| ||||| Sbjct 779 CGTACAGCACCTC-CCGTTAATGGTCAGCTTCGCATAGCTGTTAACGCTGCTGACTTTGG 837 Query 25429 TTTCGGTATC---CTCGCCCTGTTTGGCCTCGCCAAAATCAAACGCCTGATGGCGGCCGC 25485 | ||||| |||||| ||| |||||| |||| | | | | ||||| |||| Sbjct 838 T---GGTATTGCTCTCGCCGGTTTTCCACTCGCCGGAATCCACCTCTTTGTGGCGTCCGC 894 Query 25486 G-TACCTCGATCTCCACCGCGATTT-CCTCGCCGGTGTCGTCGCGCTGGTAGGAGCCGGT 25543 | ||| | | ||| || || ||||||||||||| ||||||||| |||||||| Sbjct 895 GGTACAACCAGCTCAACGGCCTGCAACCTCGCCGGTGTCATCGCGCTGGATAGAGCCGGT 954 Query 25544 AAAGCGCAGCGGTACAGCCG--CGCTGCTGCC---CCA-CTGTTTCAACACCAGATCATC 25597 ||||||| | | || |||| | | | ||| ||| |||||| |||| ||| | || Sbjct 955 GAAGCGCATCTGCAC-GCCGTCCACCGTGGCCTTGCCATCTGTTTAAACAGCAGTGCCTC 1013 Query 25598 CACGCCGCCGATCGTCCACTCCATATCAAGCGCATCATCGTCCAGCCCGTTATCCACGAA 25657 ||||||||| ||| ||| | || || || |||| |||||||| ||| | | Sbjct 1014 AGTGCCGCCGATGGTCATTTCCGT-TCCAGTGCGCCATCATCCAGCCCCAGATCGAT-AC 1071 Query 25658 CG-CGGCACCGTTCAT-GCCGCCGCCCCGGTAGGCGTCCAGCTTGCGTGACAGCTTCGGC 25715 || | | |||| ||| |||||| || || ||| || |||||||| || | |||||| Sbjct 1072 CGACTGAACCGGGCATAGCCGCC-CCGCGATAGTTCTCAAGCTTGCGGGAAAATTTCGGC 1130 Query 25716 AGGGTCACGGCGGTCACCAC-GCCCTGATAGCTGTTTGAATCGTTGAAA-AGGTTCAGCC 25773 ||||| |||| ||| || |||| || |||| |||||||| | |||||| Sbjct 1131 AGGGTGACGGAT-TCAGCAATGCCC--ATCAGTGTTACCGGCGTTGAAAGATGTTCAGGT 1187 Query 25774 CTTTTAA-TTTGCGGGGTAATGCCATTTATCCGGCTCCTCAGCTGTTAACGGATGCGGCG 25832 ||||| |||||| ||||| ||||| ||| || | ||| ||| | || | Sbjct 1188 GTTTTAGCTTTGCGTGGTAAGGCCATGGGTCCCCCTTATGCGCTT---ACGCGGGTGGTG 1244 Query 25833 AAGTTCGCCAGGTAGCTGTCGGTGATGCGCTGGCGCAGGGTCAAATCTTCCAGCGGCGGC 25892 || | | ||||||| | ||| ||||||||||||||||| ||| | ||||||||||||| Sbjct 1245 AAATCCACCAGGTAACGGTCAGTGATGCGCTGGCGCAGCATCAGGTTTTCCAGCGGCGGC 1304 Query 25893 ACCGGCGTGTAGTCGTAATCAATAAAGAGCTTGCCCGCCTTCAGCG-TGTCTTTATCGTT 25951 || ||||| |||||||| || || |||| || || || ||||| | ||||||| ||||| Sbjct 1305 ACTGGCGTATAGTCGTAGTCGATCCAGAGTTTCCCGGCTTTCAGGGCTGTCTTTGTCGTT 1364 Query 25952 GGCCGTGTCGTCATACCAGCACGACGCGCCCAGCAGGTAACCGGCGCTGACCAGCTCGCG 26011 | |||| ||| |||||| |||| | ||||| || | | ||||| ||| Sbjct 1365 AACGCTGTCATCAATCCAGCAATCACCGCCGATGAGGTAGCCCT-GATTACCAGGCTGCG 1423 Query 26012 GAATTTGGCATTGATGCCCGCGATAATGTCGCGCACCAGTACCGGCGTCAGCGGCTTGTC 26071 | |||||| ||| || ||||||| ||||| |||| ||| | |||||| | || Sbjct 1424 CATTTTGGCGCGGATACCTTCGATAATATCGCGGGCCAGCGACGGGTTAAGCGGCATATC 1483 Query 26072 GTTGGCCCACATATGCGCCTCGGCCATCGTGTCGGCAATCACCTGCGCCGTGCGGGTGTA 26131 ||||||||||| |||| ||||| ||||| || | |||||||| ||||||||||| Sbjct 1484 CACCGCCCACATATGGCCCTCTGCCATGGTGTCAGCCAGTACCTGCGCGGTGCGGGTGTA 1543 Query 26132 GTTTTCAAACGCAAACAGCGGAT-CGTCGCTACAGGT-GCGGTTGCCCCAGAAGCGGAAG 26189 |||||||||| |||||||||| | || || |||| |||| |||||||||||||| Sbjct 1544 GTTTTCAAACTGGAACAGCGGATTCATCACT-CAGGCAGCGGGAACCCCAGAAGCGGAAA 1602 Query 26190 CCATCTTTACGGATCAGGGTGGTAACGCATGCCTCGTTGAGCAGGTCGGCGTCGGT-GCC 26248 ||||| || | ||||| |||||| ||| || ||| ||||| |||| || || ||| Sbjct 1603 CCATCCTTCCTGATCAAGGTGGTGACGTCGTTCTGGTTCAGCAGTCCGGCATCAGTTGCC 1662 Query 26249 GGTCTGCTGCAAATCCCAGAAGACCGAGGCGGAAATGCCGGTCACACCGTTAACGCCAAC 26308 || | ||||| ||||||||| || || || | |||||| || ||||| |||||| | Sbjct 1663 GGG-TCCTGCAGATCCCAGAACACATCCGCAGACAAGCCGGTTACGCCGTTGACGCCA-C 1720 Query 26309 GTTGGACAGGGTTTTGTGCCAGCCGGTGTCGGTGTCGATTTTT-GCCCGCAGGCCCAGCG 26367 ||| ||||||||||||||||||||||| | |||||||||| || ||||| || || | Sbjct 1721 GTTAGACAGGGTTTTGTGCCAGCCGGTTTGCTCGTCGATTTTTAGCGCGCAG-CCAAGGG 1779 Query 26368 CTCGGGCGGTGGCGTACGCGGTTTCGGA-CTGATTGGCGGTG-GTGTTCCAGCTGATAAA 26425 | |||||| | ||||| ||||| || | | | || | |||| || | || || Sbjct 1780 CGCGGGCG-TAGCGTA-GCGGT--CGCATCCGCCTGCAGCACCGTGTCAAAGTTTATGAA 1835 Query 26426 GTCCGGCCAGATAACCATTAATTCGCGCTGGCTGAAGTTCTCGCGGTATGCCATCGCCTC 26485 ||| |||||||||| |||| ||| |||||||||||||| |||||||| | ||||| Sbjct 1836 GTCAGGCCAGATAATCATTCCTTCACGCTGGCTGAAGTTGTCGCGGTAAGTGATCGCTCT 1895 Query 26486 GGAAAGGGTTTTGCAGCCCCATGCCGACACATAGGCGAAGGCGCGCAGCTGCTGAGCAAT 26545 | | |||||| ||||| | || |||| ||| || ||||| ||||| ||| || | Sbjct 1896 TGCCACGGTTTTACAGCCGTAAGCTGACATATACGCAAAGGCCCGCAGGCTCTGCGCCAC 1955 Query 26546 GCTGGCAAGCGCGGTCGAGACTTCCAGCGCGTCGAGACCCGGCACGCCG-AGAATGCGCG 26604 ||| | ||| | || || || || ||| || | |||||||||||| |||||||||| Sbjct 1956 GCTCAC-AGCTCAGTGGATACGGCCTGCGTATCATGCCCCGGCACGCCGAAGAATGCGCG 2014 Query 26605 GTTTGACGCCGAGCTGCGTCTGCGCGCTCAGCAGCGCCTTCATGCCGGT----GTAACG- 26659 |||| ||||| ||||||| ||||||| || ||||||||||||||||| || || Sbjct 2015 GTTTCACGCC-AGCTGCGACTGCGCGGAAAGTAGCGCCTTCATGCCGGTTTTCTTACCGT 2073 Query 26660 -GCCATTCTCGTCGGTGGTGCCGATAATGTTCGAGGTGGTTTCCGCCGGGGTGGCACCTT 26718 | || || || | ||||||||| || |||||||||||||| ||| | || | Sbjct 2074 CGGCAGTCACGCC------GCCGATAATATTTGAGGTGGTTTCCGCTTCGGTTTCGCCCT 2127 Query 26719 CCGCCACGCGCACCACGACGGTGACGGG-TTTGGCCTGGTCAGCGATCGCCTGCAGCGCG 26777 || ||||||||||| ||||||||||| ||| |||||||| |||||||| | ||| | | Sbjct 2128 GGGCAACGCGCACCACTACGGTGACGGGTTTTTGCCTGGTCTGCGATCGCGTCCAGTGAG 2187 Query 26778 GCGGCCAGCGTGCCTTTTTTACCGGCTTTGCCAATGGCCGACAGCACGTTGGTCAGCAGC 26837 ||||||||| || | || ||||| || |||| | ||| || | ||| ||||| Sbjct 2188 CGGGCCAGCGTACCGGACTCGCCCGCTTTACCGCTGGCGGTCAGTACATCGGTAAGCAGT 2247 Query 26838 ACC-GGCTCATTGAGCGGGAAGGCGGCCGCATCGGCATCGTCTGCGGTACAGACCATGCC 26896 ||| |||| |||||||||||| || ||||||||||| || |||| || |||||||| Sbjct 2248 ACCAGGCTTATTGAGCGGGAACATGGAGGCATCGGCATCATCGCCGGTGCACACCATGCC 2307 Query 26897 GACAATGGCCGTGGATACGGTGGAAATGGTGCGCGTGCCGTCGTTGATTTCGACGAC-GC 26955 ||||| |||||| || || | || | ||| ||||||||||| | ||| || || || Sbjct 2308 CACAATCGCCGTGCTCACCGTCGTGATAGAGCGGGTGCCGTCGTTAACTTCTACAACAGC 2367 Query 26956 GGACACCGTG 26965 | || ||||| Sbjct 2368 GCACGCCGTG 2377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 94481512530048