Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20maxima_20[genbank_20GCA_5F002006925.1_202017-03-07]
1,504 sequences; 345,757,338 total letters
Query= NC_019932.1
Length=29564
Score E
Sequences producing significant alignments: (Bits) Value
seq1504 737 0.0
>seq1504
Length=2444
Score = 737 bits (816), Expect = 0.0
Identities = 1584/2290 (69%), Gaps = 102/2290 (4%)
Strand=Plus/Plus
Query 24724 GCCTGCACCGCTTTAAAGGGACGCGTCGCCTGGTCTACCGCTTTCAGCAGCACCTGCAGT 24783
|||||| | |||||||||| || || || || ||||| ||||| | |||||||||
Sbjct 142 GCCTGCGCAACTTTAAAGGG-CGGGTGAGCTTATCAACCGCATTCAGAACCACCTGCAGA 200
Query 24784 TTGAGGTTGTTA---CTCATCCGGGGATACTCCGCTGCGCATCAGGGCTTTGTGCCGCCA 24840
||||| ||| |||||| || | ||||| ||||| | ||| ||||| ||||
Sbjct 201 CGCAGGTTTTTATCACTCATCGCTGG---CCCCGCTTCGCATTATCGCTCTGTGC-GCCA 256
Query 24841 GTCCAGTAACTCG-GCCAGCGGCATGTCGTACATTTCAGACGGGGGCCAGTGAAAGATGA 24899
||||| | || | |||||||| ||| | | ||||| ||||||||||||||
Sbjct 257 CTCCAGCACTTCCTGTAAGCGGCATAACGTCAGTGACGGACGGCGGCCAGTGAAAGATCG 316
Query 24900 CCGCAACGTCGGCCATCAGGTCATTCACGGTCAGGCT-TCGGGGCCAGTCTTGTCGGCCG 24958
|| | ||| ||| |||||||| || |||||||| |||| | | || |||||
Sbjct 317 TGGCGATATCG-CCACCAGGTCATCTACCGTCAGGCTGTCGG--CAAATCGGCAAGGCCG 373
Query 24959 ACTTCGGCAACAAAAAACCGATCACTTTCCCGCCCAGCGTAATCAGGTCAACCGGATCGA 25018
||||||||||||||||| || ||| | || || |||||| |||| ||||
Sbjct 374 ACTTCGGCAACAAAAAAAGGACCACCTCGATCGACATCGCGGCCAGGTCTGCCGGGTCGA 433
Query 25019 GGTTTAGGCACT--CTGATTTCGTCAGTGCAGGCAGGGTAATGCGCGGCAGCACGGACAG 25076
||| | || | ||| ||||| | ||| || || || || | ||||| ||
Sbjct 434 GGTCC-GCCATTTCCTGCGGG-GTCAGCGTCGGCGTGGAGATACGGGGGATCACGGTCAT 491
Query 25077 CAGGGCGTCCACGTCCGAGGCGCACAGGTCAGCCAGCCGCACGCCGCGCAGCGCGCCCGC 25136
|| | | |||||||| | || | ||||||| |||||||| ||||| |
Sbjct 492 CATTGAGGCCACGTCCATCTCCATCACCGCCTGCAGCCGCGTACCGCGCAGTGCGCCGGA 551
Query 25137 GTTGGGCTTAAACAGTTCCACCTGGCTGATTTCGGTCTCGCCA-CGTTTCAGCGGGGTTT 25195
| || ||| ||| | | | | || || || ||| || || | ||| | |
Sbjct 552 TTGCGGTTTACGCAGCACAATTTCCGTAATCGTGGCATCACCAACGCTTAATAGGGCTAT 611
Query 25196 CCAGGATGATCACGTTTTCGTTCTGTTCCATTTTCGTTACTC--GCAATAGTCAGGTTTA 25253
|||| | ||| || | | ||||| ||| | |||| || | || ||| |
Sbjct 612 CCAGCTT---CACCGTTGC-TACTGTT-----TTC-TCACTCATGCTCTTTTCCTGTT-A 660
Query 25254 TTCAG-GGCCAGCGCCGGGCGCTGGCGTCAGGGTTACATC---AGGCCGAGGTTTTTGCG 25309
| | ||| |||| || | ||| ||| | | ||| ||||||| | |||||
Sbjct 661 TGGGGTGGCTGGCGC-GGCATCGCGCG-CAGTGCTGCATTTAAAGGCCGATGGCGTTGCG 718
Query 25310 GCGCTGCTCCAGCAGGTCGGTGCCGTCCACCTTTTCAATCATGTTGATGGTG-TCGATCT 25368
| | | |||| |||||| ||| || || |||||||||||||||| |||| ||
Sbjct 719 GTGTTCTTCCATCAGGTCAACGCCATCAACAATTTCAATCATGTTGATTCACATCGACCT 778
Query 25369 CCATCAGCTCTTTGCCGTCCCACGTCAGGCGGAAATAGGTGTTTTTGGTGGTGATTTTGG 25428
| |||| | | |||| ||||| |||| |||| | || ||| |||||
Sbjct 779 CGTACAGCACCTC-CCGTTAATGGTCAGCTTCGCATAGCTGTTAACGCTGCTGACTTTGG 837
Query 25429 TTTCGGTATC---CTCGCCCTGTTTGGCCTCGCCAAAATCAAACGCCTGATGGCGGCCGC 25485
| ||||| |||||| ||| |||||| |||| | | | | ||||| ||||
Sbjct 838 T---GGTATTGCTCTCGCCGGTTTTCCACTCGCCGGAATCCACCTCTTTGTGGCGTCCGC 894
Query 25486 G-TACCTCGATCTCCACCGCGATTT-CCTCGCCGGTGTCGTCGCGCTGGTAGGAGCCGGT 25543
| ||| | | ||| || || ||||||||||||| ||||||||| ||||||||
Sbjct 895 GGTACAACCAGCTCAACGGCCTGCAACCTCGCCGGTGTCATCGCGCTGGATAGAGCCGGT 954
Query 25544 AAAGCGCAGCGGTACAGCCG--CGCTGCTGCC---CCA-CTGTTTCAACACCAGATCATC 25597
||||||| | | || |||| | | | ||| ||| |||||| |||| ||| | ||
Sbjct 955 GAAGCGCATCTGCAC-GCCGTCCACCGTGGCCTTGCCATCTGTTTAAACAGCAGTGCCTC 1013
Query 25598 CACGCCGCCGATCGTCCACTCCATATCAAGCGCATCATCGTCCAGCCCGTTATCCACGAA 25657
||||||||| ||| ||| | || || || |||| |||||||| ||| | |
Sbjct 1014 AGTGCCGCCGATGGTCATTTCCGT-TCCAGTGCGCCATCATCCAGCCCCAGATCGAT-AC 1071
Query 25658 CG-CGGCACCGTTCAT-GCCGCCGCCCCGGTAGGCGTCCAGCTTGCGTGACAGCTTCGGC 25715
|| | | |||| ||| |||||| || || ||| || |||||||| || | ||||||
Sbjct 1072 CGACTGAACCGGGCATAGCCGCC-CCGCGATAGTTCTCAAGCTTGCGGGAAAATTTCGGC 1130
Query 25716 AGGGTCACGGCGGTCACCAC-GCCCTGATAGCTGTTTGAATCGTTGAAA-AGGTTCAGCC 25773
||||| |||| ||| || |||| || |||| |||||||| | ||||||
Sbjct 1131 AGGGTGACGGAT-TCAGCAATGCCC--ATCAGTGTTACCGGCGTTGAAAGATGTTCAGGT 1187
Query 25774 CTTTTAA-TTTGCGGGGTAATGCCATTTATCCGGCTCCTCAGCTGTTAACGGATGCGGCG 25832
||||| |||||| ||||| ||||| ||| || | ||| ||| | || |
Sbjct 1188 GTTTTAGCTTTGCGTGGTAAGGCCATGGGTCCCCCTTATGCGCTT---ACGCGGGTGGTG 1244
Query 25833 AAGTTCGCCAGGTAGCTGTCGGTGATGCGCTGGCGCAGGGTCAAATCTTCCAGCGGCGGC 25892
|| | | ||||||| | ||| ||||||||||||||||| ||| | |||||||||||||
Sbjct 1245 AAATCCACCAGGTAACGGTCAGTGATGCGCTGGCGCAGCATCAGGTTTTCCAGCGGCGGC 1304
Query 25893 ACCGGCGTGTAGTCGTAATCAATAAAGAGCTTGCCCGCCTTCAGCG-TGTCTTTATCGTT 25951
|| ||||| |||||||| || || |||| || || || ||||| | ||||||| |||||
Sbjct 1305 ACTGGCGTATAGTCGTAGTCGATCCAGAGTTTCCCGGCTTTCAGGGCTGTCTTTGTCGTT 1364
Query 25952 GGCCGTGTCGTCATACCAGCACGACGCGCCCAGCAGGTAACCGGCGCTGACCAGCTCGCG 26011
| |||| ||| |||||| |||| | ||||| || | | ||||| |||
Sbjct 1365 AACGCTGTCATCAATCCAGCAATCACCGCCGATGAGGTAGCCCT-GATTACCAGGCTGCG 1423
Query 26012 GAATTTGGCATTGATGCCCGCGATAATGTCGCGCACCAGTACCGGCGTCAGCGGCTTGTC 26071
| |||||| ||| || ||||||| ||||| |||| ||| | |||||| | ||
Sbjct 1424 CATTTTGGCGCGGATACCTTCGATAATATCGCGGGCCAGCGACGGGTTAAGCGGCATATC 1483
Query 26072 GTTGGCCCACATATGCGCCTCGGCCATCGTGTCGGCAATCACCTGCGCCGTGCGGGTGTA 26131
||||||||||| |||| ||||| ||||| || | |||||||| |||||||||||
Sbjct 1484 CACCGCCCACATATGGCCCTCTGCCATGGTGTCAGCCAGTACCTGCGCGGTGCGGGTGTA 1543
Query 26132 GTTTTCAAACGCAAACAGCGGAT-CGTCGCTACAGGT-GCGGTTGCCCCAGAAGCGGAAG 26189
|||||||||| |||||||||| | || || |||| |||| ||||||||||||||
Sbjct 1544 GTTTTCAAACTGGAACAGCGGATTCATCACT-CAGGCAGCGGGAACCCCAGAAGCGGAAA 1602
Query 26190 CCATCTTTACGGATCAGGGTGGTAACGCATGCCTCGTTGAGCAGGTCGGCGTCGGT-GCC 26248
||||| || | ||||| |||||| ||| || ||| ||||| |||| || || |||
Sbjct 1603 CCATCCTTCCTGATCAAGGTGGTGACGTCGTTCTGGTTCAGCAGTCCGGCATCAGTTGCC 1662
Query 26249 GGTCTGCTGCAAATCCCAGAAGACCGAGGCGGAAATGCCGGTCACACCGTTAACGCCAAC 26308
|| | ||||| ||||||||| || || || | |||||| || ||||| |||||| |
Sbjct 1663 GGG-TCCTGCAGATCCCAGAACACATCCGCAGACAAGCCGGTTACGCCGTTGACGCCA-C 1720
Query 26309 GTTGGACAGGGTTTTGTGCCAGCCGGTGTCGGTGTCGATTTTT-GCCCGCAGGCCCAGCG 26367
||| ||||||||||||||||||||||| | |||||||||| || ||||| || || |
Sbjct 1721 GTTAGACAGGGTTTTGTGCCAGCCGGTTTGCTCGTCGATTTTTAGCGCGCAG-CCAAGGG 1779
Query 26368 CTCGGGCGGTGGCGTACGCGGTTTCGGA-CTGATTGGCGGTG-GTGTTCCAGCTGATAAA 26425
| |||||| | ||||| ||||| || | | | || | |||| || | || ||
Sbjct 1780 CGCGGGCG-TAGCGTA-GCGGT--CGCATCCGCCTGCAGCACCGTGTCAAAGTTTATGAA 1835
Query 26426 GTCCGGCCAGATAACCATTAATTCGCGCTGGCTGAAGTTCTCGCGGTATGCCATCGCCTC 26485
||| |||||||||| |||| ||| |||||||||||||| |||||||| | |||||
Sbjct 1836 GTCAGGCCAGATAATCATTCCTTCACGCTGGCTGAAGTTGTCGCGGTAAGTGATCGCTCT 1895
Query 26486 GGAAAGGGTTTTGCAGCCCCATGCCGACACATAGGCGAAGGCGCGCAGCTGCTGAGCAAT 26545
| | |||||| ||||| | || |||| ||| || ||||| ||||| ||| || |
Sbjct 1896 TGCCACGGTTTTACAGCCGTAAGCTGACATATACGCAAAGGCCCGCAGGCTCTGCGCCAC 1955
Query 26546 GCTGGCAAGCGCGGTCGAGACTTCCAGCGCGTCGAGACCCGGCACGCCG-AGAATGCGCG 26604
||| | ||| | || || || || ||| || | |||||||||||| ||||||||||
Sbjct 1956 GCTCAC-AGCTCAGTGGATACGGCCTGCGTATCATGCCCCGGCACGCCGAAGAATGCGCG 2014
Query 26605 GTTTGACGCCGAGCTGCGTCTGCGCGCTCAGCAGCGCCTTCATGCCGGT----GTAACG- 26659
|||| ||||| ||||||| ||||||| || ||||||||||||||||| || ||
Sbjct 2015 GTTTCACGCC-AGCTGCGACTGCGCGGAAAGTAGCGCCTTCATGCCGGTTTTCTTACCGT 2073
Query 26660 -GCCATTCTCGTCGGTGGTGCCGATAATGTTCGAGGTGGTTTCCGCCGGGGTGGCACCTT 26718
| || || || | ||||||||| || |||||||||||||| ||| | || |
Sbjct 2074 CGGCAGTCACGCC------GCCGATAATATTTGAGGTGGTTTCCGCTTCGGTTTCGCCCT 2127
Query 26719 CCGCCACGCGCACCACGACGGTGACGGG-TTTGGCCTGGTCAGCGATCGCCTGCAGCGCG 26777
|| ||||||||||| ||||||||||| ||| |||||||| |||||||| | ||| | |
Sbjct 2128 GGGCAACGCGCACCACTACGGTGACGGGTTTTTGCCTGGTCTGCGATCGCGTCCAGTGAG 2187
Query 26778 GCGGCCAGCGTGCCTTTTTTACCGGCTTTGCCAATGGCCGACAGCACGTTGGTCAGCAGC 26837
||||||||| || | || ||||| || |||| | ||| || | ||| |||||
Sbjct 2188 CGGGCCAGCGTACCGGACTCGCCCGCTTTACCGCTGGCGGTCAGTACATCGGTAAGCAGT 2247
Query 26838 ACC-GGCTCATTGAGCGGGAAGGCGGCCGCATCGGCATCGTCTGCGGTACAGACCATGCC 26896
||| |||| |||||||||||| || ||||||||||| || |||| || ||||||||
Sbjct 2248 ACCAGGCTTATTGAGCGGGAACATGGAGGCATCGGCATCATCGCCGGTGCACACCATGCC 2307
Query 26897 GACAATGGCCGTGGATACGGTGGAAATGGTGCGCGTGCCGTCGTTGATTTCGACGAC-GC 26955
||||| |||||| || || | || | ||| ||||||||||| | ||| || || ||
Sbjct 2308 CACAATCGCCGTGCTCACCGTCGTGATAGAGCGGGTGCCGTCGTTAACTTCTACAACAGC 2367
Query 26956 GGACACCGTG 26965
| || |||||
Sbjct 2368 GCACGCCGTG 2377
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 94481512530048
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