Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20maxima_20[genbank_20GCA_5F002006925.1_202017-03-07] 1,504 sequences; 345,757,338 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq6 105 8e-18 seq2 104 3e-17 seq7 96.9 4e-15 seq1 95.1 1e-14 seq3 86.0 7e-12 >seq6 Length=23636167 Score = 105 bits (116), Expect = 8e-18 Identities = 170/241 (71%), Gaps = 4/241 (2%) Strand=Plus/Plus Query 75128 CGGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCT-TCAACG 75186 ||||| | ||| | || ||||||||| ||||||||||||||| | ||| || | || | Sbjct 11060637 CGGGATTTTGACTATGATTACTTTGGCTTCAAAACCCTTGAGAGGTCCTACCTCTTAAAG 11060696 Query 75187 GCTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCAT 75246 | || | || | | | |||| || ||| | ||||| ||| |||| | || || || Sbjct 11060697 G-TCCAAGGGAAGGTTGTAGAAAGACCTCAGCATATGTTGATGAGGGTTTCTATTGGAAT 11060755 Query 75247 CCACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTT 75306 ||| ||| || |||||||||| | | |||||| | | |||||||||| | ||| Sbjct 11060756 TCACAAGGATGATATTGATTCTGCTATTAAAACATACCATATGATGTCCCAAAGATGGTT 11060815 Query 75307 CATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCAG--ATGTCCAGT 75364 || || ||| | || || || || |||||||| || ||||| || ||| |||| ||| Sbjct 11060816 CACCCATGCATCTCCTACACTTTTTAATGCTGGAACTCCAAGGCCCCAGGCATGTTTAGT 11060875 Query 75365 T 75365 | Sbjct 11060876 T 11060876 >seq2 Length=53008150 Score = 104 bits (114), Expect = 3e-17 Identities = 252/380 (66%), Gaps = 4/380 (1%) Strand=Plus/Minus Query 175300 CTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAA 175359 ||||||| ||| ||||| || || ||||| || || ||| || || || |||||| Sbjct 8162772 CTTCTCGTTGGTCCTCCAGGAACTGGGAAGACTCTTCTTGCCAAGGCAATTGCTGGTGAA 8162713 Query 175360 TCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTG 175419 | ||| ||||| || || | | | ||||| ||||||||||||||||| Sbjct 8162712 GCCGGTGTTCCATTTTTCTCCATATCAGGTTCTGAGTTTGTTGAGATGTTTGTTGGTGTC 8162653 Query 175420 GGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTC 175479 ||||| || || || ||||| || | | ||| || ||| || || ||||| Sbjct 8162652 GGTGCATCTAGAGTCCGAGATCTTTTCAAGAAGGCCAAAGAGAATGCTCCTTGCATTGTA 8162593 Query 175480 TTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGGTATGCCAGCAA 175537 || | ||||| |||||||| || || | ||| | | |||| | | | | || | Sbjct 8162592 TTTGTGGATGAAATTGATGCCGTTGGAAGACAAAGAGGAACTGGAATTGGAGG--AGGGA 8162535 Query 175538 ATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATG 175597 |||| || ||||| || || |||| || || | || || |||||||| ||||| | Sbjct 8162534 ATGATGAAAGAGAGCAGACCCTTAACCAGCTTTTGACAGAAATGGATGGTTTTGAGGGTA 8162475 Query 175598 AGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGATGACGCCCTCC 175657 | ||||| || | || ||||| || ||||| | | ||| || |||||| ||| | Sbjct 8162474 ATACTGGTATCATTGTGATTGCTGCAACTAACAGGGCGGACATTCTTGATTCTGCCTTAT 8162415 Query 175658 TTCGCCCGGGTCGTTTTGAT 175677 | | || || ||||||||| Sbjct 8162414 TGAGGCCTGGACGTTTTGAT 8162395 >seq7 Length=22269817 Score = 96.9 bits (106), Expect = 4e-15 Identities = 169/245 (69%), Gaps = 7/245 (3%) Strand=Plus/Minus Query 64975 GAAAAGAAGCAGTTATTTGAAGCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGAAA 65034 |||||||| | | ||| | |||||| | || || || || | | ||||| || | Sbjct 8165408 GAAAAGAACCGTCTCTTTCACGCCATCGAGACGGTTCCCTGCGTCGCAAAGAAAGCCACG 8165349 Query 65035 TGGGCAATGAAATGGTTTGACACAAAGTCTCGCT--CCTTCGCCGAGCGCCTTTTTGCGT 65092 ||||| | || ||| | ||| | |||| | ||||| ||| | | | |||| Sbjct 8165348 TGGGCGTTAAATTGGATCGAC-----GGCTCGGAGACTTTCGCGGAGAGATTAATCGCGT 8165294 Query 65093 TTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAAGA 65152 |||| || |||||||| || |||||||| ||| || ||||| || | |||| | || | Sbjct 8165293 TTGCTTGCGTGGAGGGGATTTTCTTCTCAGGGAGTTTTTGCGCGATATTTTGGCTCAAAA 8165234 Query 65153 AGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCGAGATGAGGGTC 65212 |||| || | ||||| || || |||||||| || | || || ||||||||||||| Sbjct 8165233 AGCGCGGGTTAATGCCGGGATTAACATTCTCAAACGAGTTGATCTCTCGAGATGAGGGTC 8165174 Query 65213 TCCAC 65217 ||||| Sbjct 8165173 TCCAC 8165169 >seq1 Length=32082701 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 75128 CGGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTA--TCTTCAAC 75185 ||||| | ||| | || ||| ||||| |||||||||| |||| | ||| |||| || Sbjct 28519353 CGGGATTTTGACTATGATTATTTTGGCTTCAAAACCCTGGAGAGGTCCTACCTCTTGAAG 28519412 Query 75186 GGCTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCA 75245 | || | || | | | |||| || || | ||||| ||| |||| || | || | Sbjct 28519413 G--TCCAAGGAAAAGTTGTAGAAAGACCCCAACATATGTTGATGAGGGTTGCTGTTGGGA 28519470 Query 75246 TCCACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGT 75305 | ||| ||| ||||||||||||| | | | |||||| | | |||||| ||| | || Sbjct 28519471 TTCACAAGGATGACATTGATTCTGCCATCAAAACATACCATATGATGTCTCAACGATGGT 28519530 Query 75306 TCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCAG 75355 | | || ||| | || || || || |||||||| ||||||||| | ||| Sbjct 28519531 TTACCCATGCATCTCCCACACTTTTTAATGCTGGAACACCAAGAGCCCAG 28519580 >seq3 Length=30666748 Score = 86.0 bits (94), Expect = 7e-12 Identities = 145/208 (70%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 175385 CTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCT 175444 ||||| || | ||||| ||| ||||||||||||| || || || || | ||| | | Sbjct 29776114 CTGCCTCAGAGTTTGTTGAGTTGTTTGTTGGTGTTGGCGCATCCAGAGTGAGGGATTTGT 29776173 Query 175445 TTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGG 175504 |||| | ||| || ||| |||||||| || |||||||| |||||||| |||| Sbjct 29776174 TTGAGAAGGCCAAATCGAAGGCACCGTGTATTGTGTTTATTGATGAAATTGATGCTGTGG 29776233 Query 175505 GCAAGCAACGCAGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAA 175562 | | || | | || || | | | | || ||| || || ||||| || || ||||| Sbjct 29776234 GGAGACAGAGAGGAGCAGGGCTTGGAGG--AGGAAACGATGAAAGAGAGCAGACTATTAA 29776291 Query 175563 TCAACTACTCACCGAGATGGATGGCTTT 175590 ||| || | || || |||||||||||| Sbjct 29776292 TCAGCTTTTGACTGAAATGGATGGCTTT 29776319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596558384491520