Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20maxima_20[genbank_20GCA_5F002006925.1_202017-03-07] 1,504 sequences; 345,757,338 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq2 102 1e-16 seq7 98.7 1e-15 seq1 91.5 2e-13 >seq2 Length=53008150 Score = 102 bits (112), Expect = 1e-16 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| |||| || | ||||| || || ||||| |||||||| || ||| Sbjct 27084043 ATGCAAATCTTTGTTAAGACTCTTACTGGCAAGACCATTACCTTAGAAGTTGAGAGTTCG 27083984 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| || || ||| ||| || ||||| || |||||||| || || || || Sbjct 27083983 GATACTATTGACAATGTTAAAGCTAAGATTCAAGACAAGGAAGGCATCCCACCTGACCAG 27083924 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 || || | || | ||| ||||||||||| |||||| Sbjct 27083923 CAGAGGCTTATCTTTGCTGGTAAGCAGCTTGAAGAT 27083888 Score = 93.3 bits (102), Expect = 6e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || | ||||||||||| || || | || || || ||| Sbjct 27083587 ATGCAAATTTTTGTGAAGACTCTCACTGGAAAAACAATCACTCTGGAGGTAGAGAGTTCG 27083528 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || ||||| || || |||||||| || ||||| || ||||| || Sbjct 27083527 GACACGATTGATAATGTGAAGGCCAAGATCCAAGATAAGGAGGGCATTCCACCAGACCAG 27083468 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||||| ||| || |||||||| |||||| || || | ||||||| || Sbjct 27083467 CAGAGGTTGATTTTTGCAGGCAAGCAGCTTGAAGATGGGAGGACCCTTGCAGATTACAAC 27083408 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGA 156038 || || || | || | ||||| ||||| ||| Sbjct 27083407 ATTCAGAAGGAATCCACATTGCATTTGGTGTTGAGA 27083372 >seq7 Length=22269817 Score = 98.7 bits (108), Expect = 1e-15 Identities = 119/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 18158 CACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAAC 18217 ||||| ||||| ||| | ||| ||||||| || || || ||||| || ||||| Sbjct 8165155 CACGCGAAATCGCAGTGGAGACCCTCATCTCGAGAGATCAACTCGTTTGAGAATGTTAAT 8165214 Query 18218 CCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAAT 18277 || ||||||| || | ||||| ||||||||||||| ||||| | || ||||| Sbjct 8165215 CCCGGCATTAACCCGCGCTTTTTGAGCCAAAATATCGCGCAAAAACTCCCTGAGAAGAAA 8165274 Query 18278 ATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAA 18319 || ||||| ||||| || ||||| |||||||| || || ||| Sbjct 8165275 ATCCCCTCCACGCAAGCAAACGCGATTAATCTCTCCGCGAAA 8165316 >seq1 Length=32082701 Score = 91.5 bits (100), Expect = 2e-13 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 18149 TATAATAAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTA 18208 || || || ||||| ||||| ||| | |||||||||| || |||| ||||| Sbjct 31016690 TACAACAAGCACGCGAAATCGCAGTGGAGTCCTTCATCTCGCGAGATTAGCTCGTTCGAG 31016631 Query 18209 AACGTTAACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTA 18268 || |||| || ||||||| || | ||||| | ||||||||||| |||||| | Sbjct 31016630 AAGGTTAGGCCCGGCATTAACCCGCGCTTTTTCAACCAAAATATCGCGCAGAAACTGCCC 31016571 Query 18269 GAAAAGAATATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAA 18318 || |||||||| || || ||||| || |||||||| | ||| || || || Sbjct 31016570 GAGAAGAATATCCCTTCCACGCAAGCAAACGCTATCAGTCTCTCCGCGAA 31016521 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731858240806400