Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20maxima_20[genbank_20GCA_5F002006925.1_202017-03-07] 1,504 sequences; 345,757,338 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq6 114 2e-20 seq2 107 3e-18 seq7 86.0 1e-11 >seq6 Length=23636167 Score = 114 bits (126), Expect = 2e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 171872 AGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACC 171931 ||| | |||||| |||||||| || | || | || |||| ||||||||||| || Sbjct 4366470 AGTTGACTCTTTCTGGATATTATAGTCAGCCAACGTACGGCCGTCTTCCAATTGTTTTCC 4366411 Query 171932 AGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTT 171991 |||||| || ||||| ||||| || ||||| || || || || ||||| || || || Sbjct 4366410 AGCAAAGATCAATCTTTGTTGATCTGGTGGGATCCCCTCCTTGTCTTGGATCTTGGCCTT 4366351 Query 171992 TACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGT 172051 |||||| || |||||||| || || || ||||| || || || ||||||| || Sbjct 4366350 GACATTATCAATCGTATCTGAACTCTCCACCTCGAGAGTGATCGTCTTCCCAGTTAGGGT 4366291 Query 172052 TTTAATGAATATCTGCAT 172069 ||| | ||| |||||||| Sbjct 4366290 TTTGACGAAGATCTGCAT 4366273 Score = 109 bits (120), Expect = 1e-18 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 171872 AGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACC 171931 ||| | |||||| || ||||| || | || | || |||| ||||||||||| || Sbjct 4417007 AGTTGACTCTTTCTGGATGTTATAGTCAGCCAACGTGCGGCCGTCTTCCAATTGTTTTCC 4416948 Query 171932 AGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTT 171991 ||||| || ||||| ||||| || ||||| || ||||| || ||||| || || || Sbjct 4416947 GGCAAAGATCAATCTTTGTTGATCTGGTGGGATCCCTTCCTTGTCTTGGATCTTGGCCTT 4416888 Query 171992 TACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGT 172051 |||||| || |||||||| || || || ||||| || || || ||||||| || Sbjct 4416887 GACATTATCAATCGTATCTGAACTCTCCACCTCGAGAGTGATCGTCTTCCCAGTTAGGGT 4416828 Query 172052 TTTAATGAATATCTGCAT 172069 ||| | ||| |||||||| Sbjct 4416827 TTTGACGAAGATCTGCAT 4416810 Score = 105 bits (116), Expect = 1e-17 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 |||||| | ||| || | || | ||| | ||| | ||| || ||| |||||||| | Sbjct 4327096 ACCACCACGAAGGCGGAGCACAAGATGGAGAGTGGACTCCTTCTGAATGTTATAATCAGC 4327037 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 ||||| || | || || | || || |||||||| || | ||||| || || ||||| Sbjct 4327036 TAAAGTACGGCCATCCTCAAGCTGCTTCCCAGCAAAGATGAGCCTCTGCTGATCTGGTGG 4326977 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 || ||||| || || || || || || |||||| ||||||||||| || || Sbjct 4326976 AATCCCTTCCTTGTCCTGAATCTTTGCCTTAACATTATCAATAGTATCTGAGCTCTCCAC 4326917 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || |||||||| || || ||||| || || || | ||||||||||| Sbjct 4326916 CTCCAGAGTAATAGTCTTCCCAGTCAAGGTCTTGACAAATATCTGCAT 4326869 Score = 100 bits (110), Expect = 5e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| || || || | || | ||| | || | ||| || || |||||||| Sbjct 4326870 ATACCACCCCTCAGGCGCAGAACCAGATGAAGGGTCGACTCCTTCTGGATGTTATAATCC 4326811 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | || | | | || || | ||||| ||||| || || || | ||| || || ||| Sbjct 4326810 GCAAGAGTCCTTCCATCCTCAAGCTGTTTGCCAGCGAAGATCAAACGCTGCTGATCCGGT 4326751 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || |||||||| |||||||| ||||| || ||||| || || ||||| || Sbjct 4326750 GGAATTCCTTCCTTATCTTGGATTTTTGCCTTGACATTGTCAATTGTGTCTGAGCTCTCA 4326691 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | |||||| ||||| ||||| | || |||| ||||||||||| Sbjct 4326690 ACTTCCAAAGTAATTGTTTTCCCAGTAAGGGTCTTAACAAATATCTGCAT 4326641 >seq2 Length=53008150 Score = 107 bits (118), Expect = 3e-18 Identities = 163/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 171839 AATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATC 171898 || |||||| | || || | || | ||||||||||| ||| || ||||| || || Sbjct 27083129 AAAACCACCACGCAGGCGAAGGACAAGATGTAAAGTAGACTCCTTCTGGATATTGTAGTC 27083188 Query 171899 TGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGG 171958 | |||| || | || |||| || || || |||||||| || ||||| || || || Sbjct 27083189 AGCCAAAGTACGCCCATCCTCCAGCTGCTTCCCGGCAAAAATCAACCTCTGCTGATCTGG 27083248 Query 171959 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTC 172018 || || ||||| || || || |||||| || |||||| || || ||||| || Sbjct 27083249 AGGAATCCCTTCCTTGTCCTGGATTTTAGCCTTCACATTATCAATGGTGTCTGAACTCTC 27083308 Query 172019 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || || || |||||||| || || ||||| || | ||| ||||||||| Sbjct 27083309 AACCTCCAGGGTGATGGTTTTTCCTGTCAATGTCTTCACGAAAATCTGCATT 27083360 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| || | ||| || | || || |||| ||| | ||| || |||||| || || Sbjct 27083814 ATACCTCCACGAAGGCGAAGGACCAAGTGTAGAGTGGACTCCTTCTGAATATTGTAGTCG 27083873 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | | | | || || | || ||||||||||| || | ||||| ||||||||| Sbjct 27083874 GCGAGGGTCCTTCCATCTTCAAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGGTCAGGT 27083933 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || ||||| || ||| ||| ||||| |||||||| || || Sbjct 27083934 GGGATGCCTTCCTTGTCTTGAATCTTAGCTTTAACATTGTCAATAGTATCCGAACTCTCA 27083993 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||||| |||||||| || ||||| | || |||| || || ||||| Sbjct 27083994 ACTTCTAAGGTAATGGTCTTGCCAGTAAGAGTCTTAACAAAGATTTGCAT 27084043 Score = 95.1 bits (104), Expect = 2e-14 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | ||| || | || || || | || | ||| || ||| ||||||||| Sbjct 27083586 ATGCCACCACGAAGGCGGAGAACCAAGTGAAGGGTGGACTCCTTCTGAATGTTATAATCT 27083645 Query 171900 GATAAAGATCGTTCG-TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGG 171958 | || | || | | || || | || || ||||||||||| || ||||| ||||| || Sbjct 27083646 GC-AAGGGTCCTACCATCTTCAAGCTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCGGG 27083704 Query 171959 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTC 172018 || || || || |||||||| || || || |||||| ||| || ||||| ||| Sbjct 27083705 AGGAATGCCCTCCTTATCTTGGATCTTGGCCTTCACATTATCTATGGTGTCTGAACTTTC 27083764 Query 172019 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | ||| ||||| || ||||| || || || | || |||||||| Sbjct 27083765 CACCTCCAAAGTGATGGTCTTCCCAGTCAAAGTCTTCACAAAGATCTGCAT 27083815 Score = 86.0 bits (94), Expect = 1e-11 Identities = 116/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 171909 CGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCT 171968 ||| | || || | ||||||||| ||||| || | || || ||||| ||||| || ||| Sbjct 27084339 CGTCCATCCTCTAGTTGTTTACCGGCAAAGATGAGCCTTTGCTGGTCTGGTGGGATCCCT 27084398 Query 171969 TCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGA 172028 || || || || ||||| ||| ||||| || || || || || ||||| | Sbjct 27084399 TCCTTGTCCTGAATTTTGGCTTTGACATTGTCAATGGTGTCGGAGCTCTCAACTTCCAAG 27084458 Query 172029 GTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || ||||||||||| | ||||| | |||||||||||| Sbjct 27084459 GTGATAGTTTTACCAGTCAGGGTTTTCACAAATATCTGCATT 27084500 Score = 84.2 bits (92), Expect = 4e-11 Identities = 167/245 (68%), Gaps = 3/245 (1%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| ||||| || | || || || | || | ||| || || |||||||| Sbjct 27088123 ATGCCACCCCTAAGACGAAGAACCAAGTGCAGGGTCGACTCCTTCTGGATGTTATAATCG 27088182 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | || | || || | |||||||||||||| || | ||||| || || ||| Sbjct 27088183 GCGAGTGTGCGCCCATCCTCAAGCTGTTTACCAGCAAAGATAAGCCTCTGCTGATCTGGT 27088242 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || || || || ||| ||| |||||| || ||||| || ||| Sbjct 27088243 GGAATCCCTTCCTTGTCCTGGATCTTAGCTTTGACATTATCGATGGTATCGGAGCTTTCA 27088302 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTTATT--AT 172077 || || || || |||||||| || || | || || | || || |||| | |||| || Sbjct 27088303 ACCTCAAGGGTTATGGTTTTTCCGGTGAGAGTCTTCACAAAGATTTGCA-TCTATTGGAT 27088361 Query 172078 AAAAA 172082 ||||| Sbjct 27088362 AAAAA 27088366 >seq7 Length=22269817 Score = 86.0 bits (94), Expect = 1e-11 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 39146 ACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGCATTAATCCTCTCTT 39205 ||| || || | ||| || || || || || |||||||| |||||||| || | ||| Sbjct 8165175 ACCCTCATCTCGAGAGATCAACTCGTTTGAGAATGTTAATCCCGGCATTAACCCGCGCTT 8165234 Query 39206 TTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCCTCCACACACGCAAA 39265 ||| ||||||||||| | |||||| | || ||||| || |||||||| || ||||| Sbjct 8165235 TTTGAGCCAAAATATCGCGCAAAAACTCCCTGAGAAGAAAATCCCCTCCACGCAAGCAAA 8165294 Query 39266 TGCTATTATTCT 39277 || |||| ||| Sbjct 8165295 CGCGATTAATCT 8165306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905118983443200