Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20maxima_20[genbank_20GCA_5F002006925.1_202017-03-07] 1,504 sequences; 345,757,338 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq2 132 1e-25 seq6 127 6e-24 seq3 120 9e-22 seq1 120 9e-22 seq1485 84.2 6e-11 >seq2 Length=53008150 Score = 132 bits (146), Expect = 1e-25 Identities = 286/420 (68%), Gaps = 12/420 (3%) Strand=Plus/Plus Query 288936 CTTAAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGA 288995 || ||| |||||||| ||| |||| || ||||| || || || ||||||||||| Sbjct 8162479 CTCAAAACCATCCATTTCTGTCAAAAGCTGGTTAAGGGTCTGCTCTCTTTCATCATTCCC 8162538 Query 288996 ACCTCTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAA 289055 |||| ||| | | | ||| || | || ||||| ||||||||||| || | || Sbjct 8162539 TCCTCC--AATTCC---AGTTCCTCTTTGTCTT-CCAACGGCATCAATTTCATCCACAAA 8162592 Query 289056 AATCACACACGGAGAATTTTGTCTCGCAAT--TGCAAATAATTCTCTTACACGGGATGCT 289113 | | || |||| ||| | | | || | || ||| | |||| || | ||||| Sbjct 8162593 TACAATGCAAGGAGCATTCTCTTTGGCCTTCTTGAAAAGA--TCTCGGACTCTAGATGCA 8162650 Query 289114 CCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATT 289172 || | ||||||| |||| || ||||| |||||| | |||| | || | |||| ||| Sbjct 8162651 CCGACACCAACAAACATCTCAACAAACTCAGAACCTGATA-TGGAGAAAAATGGAACACC 8162709 Query 289173 TGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAA 289232 ||||| || || | |||| | || ||||| ||||| || ||||| || || || | | Sbjct 8162710 GGCTTCACCAGCAATTGCCTTGGCAAGAAGAGTCTTCCCAGTTCCTGGAGGACCAACGAG 8162769 Query 289233 TAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAA 289292 ||||| |||||||| | || ||| ||| || || ||||||| |||| | || Sbjct 8162770 AAGAACACCCTTTGGAATACGAGCTCCAACAGCTGTAAATCTCTCAGGCTTCTTAAGGAA 8162829 Query 289293 TTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 || || | |||| | || | ||||||||||||| ||| || |||||| |||| || Sbjct 8162830 CTCCACCACTTCCATGAAATCTTGTTTTGCCTCATCAACTCCGGCAACATCATCAAATGT 8162889 >seq6 Length=23636167 Score = 127 bits (140), Expect = 6e-24 Identities = 224/324 (69%), Gaps = 2/324 (1%) Strand=Plus/Minus Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGC- 289088 || || ||||| ||||| ||||| || | || || || ||||| | || | ||| Sbjct 22798560 CCCACTGCATCTATTTCATCAATAAACACCAAGCATGGCGAATTC-GCCTTGGCCTTGTT 22798502 Query 289089 AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGC 289148 ||| || |||||||| | || ||||| | ||||||| |||| || | ||||| || | Sbjct 22798501 AAACAAATCTCTTACTCTTGAAGCTCCTACACCAACAAACATCTCAATGAATTCCGATCC 22798442 Query 289149 GGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTT 289208 || | || || | || |||||| || |||| ||| | |||| || ||||| Sbjct 22798441 TGACAGAGAAAAAAAGGGAACCCCTGCTTCTCCAGCTATGGCCTTAGCCAACAGCGTCTT 22798382 Query 289209 ACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTT 289268 ||||| || ||||| || ||||||||||||| ||||| | |||||| ||| | | Sbjct 22798381 TCCTGTCCCTGGTGGCCCAACTAATAGAACTCCTTTTGGAATTTTTGCACCAACTGCGGC 22798322 Query 289269 ATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATC 289328 ||||||| || ||| | |||| ||||| || | || || | |||||| ||||| Sbjct 22798321 GAATTTCTCTGGTGTCTGAAGGAATTGCACAATCTCTTGAAAATCTTGTTTTGCTTCATC 22798262 Query 289329 ACATCCTGCTACATCAGCAAAAGT 289352 | ||| || |||||| |||| || Sbjct 22798261 AACTCCAGCAACATCATCAAATGT 22798238 Score = 98.7 bits (108), Expect = 3e-15 Identities = 157/225 (70%), Gaps = 3/225 (1%) Strand=Plus/Minus Query 156044 AAAACTACCATTCCTCTTGCCA---CCCTGATCTACATACCGAGCAGTCTTATTGAAGAC 156100 |||| |||| || ||||||||| |||||||| ||||| || ||||| | ||| || || Sbjct 11061203 AAAAATACCCTTTCTCTTGCCACCTCCCTGATCCACATAACGGGCAGTATCATTAAACAC 11061144 Query 156101 ACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGA 156160 | ||||| || | ||| |||||||| || || || ||||| ||||||| |||| Sbjct 11061143 CCGCAGCATTGGGACAATGCCATTGGATGTCCCGTTTGTTCCACGAATATAACTTCCAGT 11061084 Query 156161 TGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCA 156220 || |||| || |||| | |||||||| || | |||| || ||| || Sbjct 11061083 TGCACGAATGTTGTGAACTGAGACACCAATACCTCCAGCTGATTTGCTGATAACAGCACA 11061024 Query 156221 TTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT 156265 ||||| | ||| | | || ||||||||| |||||||| ||| Sbjct 11061023 CTCCTTCAAAGTTTCATAGATTCCTTCAATACTATCATCTTTCAT 11060979 Score = 87.8 bits (96), Expect = 5e-12 Identities = 213/318 (67%), Gaps = 6/318 (2%) Strand=Plus/Plus Query 289029 ACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGC 289088 ||||| ||||| || || |||||||| | | || || | | ||||| || | Sbjct 7785481 ACCAATTGCATCTATCTCATCAATGAATACAATACTAGGTGCACACTGTCTTGCTTCTTG 7785540 Query 289089 AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGC 289148 ||| || | ||| | |||| |||| |||||| ||||||| | ||| || || | Sbjct 7785541 AAACAAGCTCCGTACTCTAGATGGCCCAACTCCAACAAACATTTCCATAAAATCTGACCC 7785600 Query 289149 GGA--TACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTC 289206 || |||| | ||| | ||| || ||| || || |||| | || ||||||||| Sbjct 7785601 AGACATACTG--AGGAAAGGCACACCTGATTCACCAGCAGTTGCCTTTGCAAGAAGTGTC 7785658 Query 289207 TTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGC-CCCAGCAGA 289265 || ||||| ||||| || || | | || | || ||||| | ||| || |||||| Sbjct 7785659 TTCCCTGTGCCAGGGGGGCCTACAAGAAGTGCACCTTTTGGAATTTTCGCTCCCAGC-TC 7785717 Query 289266 CTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTC 289325 || ||| || | ||| |||| | || | ||||| ||| || ||| | || ||||| Sbjct 7785718 CTCATACTTTTTTGGGTTCTTCAGGAAGTGTACAAACTCCATAATTTCTTGCTTAGCCTC 7785777 Query 289326 ATCACATCCTGCTACATC 289343 |||||| || |||||||| Sbjct 7785778 ATCACAGCCAGCTACATC 7785795 >seq3 Length=30666748 Score = 120 bits (132), Expect = 9e-22 Identities = 282/416 (68%), Gaps = 10/416 (2%) Strand=Plus/Minus Query 288939 AAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACC 288998 ||| |||||||| || |||| ||||||| || || || |||||||| ||| || Sbjct 29776319 AAAGCCATCCATTTCAGTCAAAAGCTGATTAATAGTCTGCTCTCTTTCATCGTTTCCTCC 29776260 Query 288999 TCTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAAT 289058 || || | || || ||| | | | | || |||||||||||||| ||||| || | Sbjct 29776259 TCC--AAGC--CCTGCTC-CTC-TCTGTCTCCCCACAGCATCAATTTCATCAATAAACAC 29776206 Query 289059 CACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAG 289118 | |||||| | || | | || | |||| || || || || | |||||| |||| Sbjct 29776205 AATACACGGTGCCTTCGATTTGGCCTTCTCAAACAAATCCCTCACTCTGGATGCGCCAAC 29776146 Query 289119 ACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGCTT 289177 ||||||| ||| || ||||| || || || | || ||| | |||| || |||| Sbjct 29776145 ACCAACAAACAACTCAACAAACTCTGAGGCAGC-ACATGAGAAAAATGGCACGCCGGCTT 29776087 Query 289178 CGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAA 289237 | || || |||||||| |||| | || || || ||||| ||||| || |||||| || Sbjct 29776086 CTCCAGCAACTGCCCTAGCCAATAAAGTTTTCCCAGTTCCTGGTGGCCCAACTAATA-AA 29776028 Query 289238 CTCCCTTTGGTACTTTT-GCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCT 289296 | |||||| | | | || || || || | || || || ||| | |||| ||| || Sbjct 29776027 CACCCTTTTGGAATCTTAGCGCCCAAAGCTGTGTACTTATCGGGGTTTTTTAGAAAATCA 29775968 Query 289297 ACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 || | || | | ||| ||||||| | |||| || || ||||||||||| || Sbjct 29775967 ACTACCTCTTGTAATTCCAATTTTGCTTGATCAGCACCAGCCACATCAGCAAATGT 29775912 >seq1 Length=32082701 Score = 120 bits (132), Expect = 9e-22 Identities = 216/313 (69%), Gaps = 2/313 (1%) Strand=Plus/Plus Query 302565 CATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTT 302624 ||| || |||||||| ||| | || || | ||| || || || || ||| || || Sbjct 553442 CATTATATCTTCCATTGCCTTCACTAGCCGCCTCTGGATGTATCCGGTCTCAGAAGTCTT 553501 Query 302625 TACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGG 302684 || || |||||||| ||||| | | |||||||||||||||||| || | ||| | || Sbjct 553502 CACTGCAGTATCAATAAGACCTTCCCTACCACCCATAGCATGGAAAAAGAACTCCTGTGG 553561 Query 302685 TCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAA 302744 ||||| | | | ||| |||| || || || || || ||| || || Sbjct 553562 GGTCAGCCCACGCAGGTACGAGTTCTCCACAAACCCTCGACTTTCTGGCCCATAATCATC 553621 Query 302745 CTTGGTAAAGTGTGGCAGGGTCCTGTTCT-CATAGCCGTATGGGATACGCTTTCCATCAA 302803 || ||||| || |||| |||| | ||| || | || |||||||||||||||| || | Sbjct 553622 TTTAGTAAAATGAGGCAATGTCC-GATCTACAAACCCAAATGGGATACGCTTTCCTTCCA 553680 Query 302804 CGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGC 302863 | |||||||| |||| || | | ||||||| || ||||| | ||| || ||||| | Sbjct 553681 CATTCTGCTGCCCCACACAAGCAGTCATCTGTGATATATTGATGAAACTTCCTTTGGATC 553740 Query 302864 CAGCATTTACCAT 302876 |||| | ||||| Sbjct 553741 CAGCTGTCACCAT 553753 Score = 89.7 bits (98), Expect = 2e-12 Identities = 154/223 (69%), Gaps = 3/223 (1%) Strand=Plus/Minus Query 156046 AACTACCATTCCTCTT---GCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACAC 156102 || |||| |||||||| ||| || ||||| ||||| || ||||| | ||| || || | Sbjct 28519952 AATTACCCTTCCTCTTGCCGCCTCCTTGATCAACATAACGGGCAGTATCATTAAACACCC 28519893 Query 156103 CTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATG 156162 ||||| || | ||| ||||| || || ||||| ||||| ||||||| || | || Sbjct 28519892 GCAGCATTGGCACAATGCCATTAGATGTCCCATTTGTTCCACGAATATAACTTCCTGTTG 28519833 Query 156163 AGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATT 156222 |||| || |||| | |||||||| || | |||| || ||| || | Sbjct 28519832 CACGAATGTTGTGAACTGAGACACCAATACCTCCAGCTGATTTGCTGATAATAGCACACT 28519773 Query 156223 CCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT 156265 |||| | ||||| | || ||||||||| |||||||| ||| Sbjct 28519772 CCTTCAAAGTATCATATATTCCTTCAATACTATCATCTTTCAT 28519730 >seq1485 Length=625357 Score = 84.2 bits (92), Expect = 6e-11 Identities = 124/176 (70%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 251485 GCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGA 251544 ||||| || | |||||||||||| | ||||||||| || || ||||| |||||||| ||| Sbjct 442110 GCACCATGAGCAATCATACAATCTCTCTCCATTTCTCCAAATCGAAGGCCACCATCCCGA 442051 Query 251545 GCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATGT 251604 | | ||||| |||||||| | || ||| | | |||||| | || ||| Sbjct 442050 GATCGTCCCTCAGCAGGCTGCCTTGTAAGAATCTGTACAGGACCCCTACCACGAGAATGG 441991 Query 251605 TGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGAT 251660 ||||||| ||||| ||||| || | ||||| ||| ||| || | ||| || Sbjct 441990 ATTTTATCATCAACCATGTGCTTCAGTCTTTGGTAATATGTGGGGCCAAGGAATAT 441935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471789238074848