Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20maxima_20[genbank_20GCA_5F002006925.1_202017-03-07] 1,504 sequences; 345,757,338 total letters Query= NC_021343.1 Length=35430 Score E Sequences producing significant alignments: (Bits) Value seq1504 246 7e-61 >seq1504 Length=2444 Score = 246 bits (272), Expect = 7e-61 Identities = 792/1193 (66%), Gaps = 67/1193 (6%) Strand=Plus/Minus Query 25499 CATGGCGCAGGACTATCACCACGGCGTAACC-GTCGTCGAAGATAACACCGGCGTCCGTC 25557 ||||||||| ||||| ||| ||||||| | || || |||| |||| |||| ||| Sbjct 2394 CATGGCGCAAGACTA-CAC-ACGGCGTGCGCTGTTGTAGAAGTTAACGACGGCACCCGCT 2337 Query 25558 CGATCACCACGATCTCGACGGCCGTTATCGGTGTCGTCTGTACCGGCGACGATGCCGACC 25617 | ||||| ||| | ||||| || | || | || || |||||||| |||||||| Sbjct 2336 CTATCACGACGGTGAGCACGGCGATTGTGGGCATGGTGTGCACCGGCGATGATGCCGATG 2277 Query 25618 CGATCACGTTCCCGCTGAACAAGCC-GGTGCTGCTCACGAACGTGCAGGCCGCGCTCGGC 25676 | || ||||||||| || ||||| ||| ||||| || | || | | |||| ||| Sbjct 2276 CCTCCATGTTCCCGCTCAATAAGCCTGGTACTGCTTACCGATGTACTGACCGCCAGCGGT 2217 Query 25677 AAGGCGGGCCGAAAGGGCACGCTGTACACGACGCTCGATGCGATC-CAGAAACAGGCCCG 25735 || |||||| || |||||| | | || || |||||| |||| ||||| Sbjct 2216 AAAGCGGGCGAGTCCGGTACGCTGGCCCGCTCACTGGACGCGATCGCAGAC-CAGGCAAA 2158 Query 25736 --CCCGTACACCGTCGTGGTGCGCGTCCCGCAAGGCAAGGATTCG--GCGGAAACCACGT 25791 ||||| |||||| ||||||||||| | || ||| | | || ||||||||||| | Sbjct 2157 AACCCGT-CACCGTAGTGGTGCGCGTTGCCCAGGGCGA--AACCGAAGCGGAAACCACCT 2101 Query 25792 CGAACATTGTCGGCACCGTGAATGCCGACGGCACGAAAACCGGGCTCAAGGCGCTCGAAT 25851 | || ||| ||||| ||||| ||||||||| | ||||||||| | |||||||| | Sbjct 2100 CAAATATTATCGGCGGCGTGACTGCCGACGGTAAGAAAACCGGCATGAAGGCGCTACTTT 2041 Query 25852 CGGCGCCGTCCGTGGTGCAGGTGAAGCCGCGGATTCT--GGCGGTTCCGGGGCTCGATAC 25909 | |||| ||| | || ||||| ||||| ||||| ||| || ||||||| ||||| Sbjct 2040 CCGCGCAGTCGCAGCTG-GCGTGAAACCGCGCATTCTTCGGC-GTGCCGGGGCATGATAC 1983 Query 25910 GCAGCCCGTCGCGAACGCGCTGGCATCCACCGGGCAACTGCTGCGTGCGATGGCGTACGT 25969 |||| |||| | | | |||| | | | ||| ||||| || | ||||| | Sbjct 1982 GCAGGCCGTATCCACTGAGCTGTGA-GCGTGGCGCAGAGCCTGCGGGCCTTTGCGTATAT 1924 Query 25970 CGCGGCTCGCAACGAGACGGGGGAACTGGTCGCCACGCAGGAAGAGGCGGTGGCCTACCG 26029 | ||| |||| || || || | |||| ||| | | ||||| Sbjct 1923 GTCAGCT--------TACGG-----CT-GTAAAACCGTGGCAAGA-GCGATCACTTACCG 1879 Query 26030 GAAGAAGTTCGGTCAACGCGAAGTGATGGTGATCTGGCCGGATTTCGTCGCATGGGACGA 26089 | || ||| | || || |||| ||| | |||||||| || ||| | | ||| | Sbjct 1878 CGACAACTTCAGCCAGCGTGAAGGAATGATTATCTGGCCTGACTTCATAAACTTTGAC-A 1820 Query 26090 CGCCGCGTCGAAAGAGGTTGAAGTGCCCGC--CGTAGCGTATGCGGTC-GGCCTGCGCGC 26146 || || | ||| || | | |||| || || ||| | | |||||||| Sbjct 1819 CGGTGCTGC-----AGGCGGATGCGACCGCTACGCTACGCCCGCGCCCTTGGCTGCGCGC 1765 Query 26147 -GAAGATCGATCAACAAACCGGCTGGCATAAGACGCTCTCGAACGTCGCTGTGAATGGCG 26205 || ||||| | |||||||||||||| || || || || ||||| || || || |||| Sbjct 1764 TAAAAATCGACGAGCAAACCGGCTGGCACAAAACCCTGTCTAACGTGGC-GTCAACGGCG 1706 Query 26206 TCGAAGG--GATCAGCAAGCCGGTTTCGTGGGATTTGCAGAACCCGGCGACCGATGCGGG 26263 | || || || | || | |||||| ||||| ||||||| || ||||| || Sbjct 1705 TAACCGGCTTGTCTGC--GGATGTGTTCTGGGATCTGCAGGACCCGGCAACTGATGCCGG 1648 Query 26264 TTTCCTCAACGAGAATCAGGTCACGACGCTGATCAACCGGAACGGCTTCCGATTCTGGGG 26323 | || ||| |||| | ||||| || |||||| | | || ||||| |||||||| Sbjct 1647 ACTGCTGAACCAGAACGACGTCACCACCTTGATCAGGAAGGATGGTTTCCGCTTCTGGGG 1588 Query 26324 CTCGCGC--ACGGCGTCCGACG-ATCCGCTGTTCGCGTTCGAAAACTACACGCGCACGGC 26380 || ||| | | || || | ||||||||||| ||| ||||||||||| ||||| || Sbjct 1587 TTCCCGCTGCCTGAGT--GATGAATCCGCTGTTCCAGTTTGAAAACTACACCCGCACCGC 1530 Query 26381 GCAGGTGCTGGCCGATACGATGGCCGAAG--CACAGATGGTCGTTATCGACGGCGCGATG 26438 |||||| ||||| || || ||||| || | || | ||| || | | | ||| | Sbjct 1529 GCAGGTACTGGCTGACACCATGGCAGAGGGCCATATGTGGGCGGTGGATATGCCGC--TT 1472 Query 26439 ATTCCGGCGCTACCGCGCGACGTGATCGAGGGCATCAACGCAAAAATGCGTGAAATGAAA 26498 | ||| |||| | ||||| | ||||| || ||| ||| |||||||| || | Sbjct 1471 AACCCGTCGCTGGCCCGCGATATTATCGAAGGTATCCGCGCCAAAATGCGCAGCCTGGTA 1412 Query 26499 ACCAAGGGCCAGTTGATCGGCGGCTCGGCGTGGTTCGACGCGGAACAG----AACGGCGT 26554 | | ||||| | | |||||||| ||| | || | |||| |||| | Sbjct 1411 ATC-AGGGCTACCTCATCGGCGGTGATTGCTGGATTGATG----ACAGCGTTAACGACAA 1357 Query 26555 TG-TGGCGCTGAAAGATGGCAAAGCGGTGATCAATTACGACTACACGCCGGTGCCCCCGC 26613 | || ||||||| || ||| |||| | |||||||| ||||| ||||| |||| Sbjct 1356 AGACAGCCCTGAAAGCCGGGAAACTCTGGATCGACTACGACTATACGCCAGTGCCGCCGC 1297 Query 26614 TGGAAAACCTCACGCTGCGCCAGAAGATCACCGACCAGTATCTGGCCGATTTC 26666 |||||||||| | |||||||||| ||||| |||| || |||| |||||| Sbjct 1296 TGGAAAACCTGATGCTGCGCCAGCGCATCACTGACCGTTACCTGGTGGATTTC 1244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 113252377276416