Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20maxima_20[genbank_20GCA_5F002006925.1_202017-03-07]
1,504 sequences; 345,757,338 total letters
Query= NC_021774.1
Length=29742
Score E
Sequences producing significant alignments: (Bits) Value
seq1504 508 1e-139
>seq1504
Length=2444
Score = 508 bits (562), Expect = 1e-139
Identities = 924/1308 (71%), Gaps = 52/1308 (4%)
Strand=Plus/Minus
Query 14088 GAAATTAATGACGGTACGCGTGTTATTTCCACAGT-AGCGACTGCAGTCGTTGGCATGGT 14146
||| |||| ||||| || || ||| | || || ||| || || | || ||||||||
Sbjct 2358 GAAGTTAACGACGGCACCCGCTCTATCACGACGGTGAGC-ACGGCGATTGTGGGCATGGT 2300
Query 14147 CTGTACAGCCAGCGATGCAGATGCCACGCTGTTTCCCCTCAATGAGCC-GGTGCTGATTA 14205
|| || | | ||||| |||||| | |||| || |||||| |||| ||| ||| |||
Sbjct 2299 GTGCACCGGCGATGATGCCGATGCCTCCATGTTCCCGCTCAATAAGCCTGGTACTGCTTA 2240
Query 14206 CCAATGTGCAAAGCGCCATTGCGAAAGCCGGTAAAAAAGGCACGCTGTCTGCTTCCCTGC 14265
|| |||| | | ||||| | ||||| || | || |||||| | || |||
Sbjct 2239 CCGATGTACTGACCGCCAGCGGTAAAGCGGGCGAGTCCGGTACGCTGGCCCGCTCACTGG 2180
Query 14266 AGGCAATCGCCGACCAGTCAAAG-CCTGTCACCGTTGTCGTGCGTGTTGCCGAAGGTACC 14324
| || ||||| |||||| |||| || |||||||| || ||||| |||||| | ||
Sbjct 2179 ACGCGATCGCAGACCAGGCAAAAACCCGTCACCGTAGTGGTGCGCGTTGCCCAGGG---- 2124
Query 14325 GGAGACGACGCAGAAGCGCAGACCACATCCAACATTATCGGCGGCACGGATGAGAACGGT 14384
||| | |||||| | ||||| || || |||||||||||| | || |||||
Sbjct 2123 -----CGAAACCGAAGCGGAAACCACCTCAAATATTATCGGCGGCGTGACTGCCGACGGT 2069
Query 14385 AAGTACACCGGTATCAAGGCGCTGTTAACTGCCGAAGCGGTCACCGGTGTTAAGCCGCGC 14444
||| | ||||| || |||||||| | | || | || | | || || || ||||||
Sbjct 2068 AAGAAAACCGGCATGAAGGCGCTACTTTCCGC-GCAGTCGCAGCTGGCGTGAAACCGCGC 2010
Query 14445 ATTCT-CGGTGTGCCGGGTCTCGATACGCAGGAGGTTGCAACTGCACT-TGCGTCGGTTT 14502
||||| ||| |||||||| | |||||||||| || | |||| || || | ||
Sbjct 2009 ATTCTTCGGCGTGCCGGGGCATGATACGCAGGCCGTATCCACTGAGCTGTGAG-CGTGGC 1951
Query 14503 GTATCAGCCTGCGCGCCTTTG-GT-TATGTCAGCGCATGGGGCTGTAAAACCATTTCCGA 14560
| | |||||||| ||||||| || ||||||||| | || |||||||||| | |
Sbjct 1950 GCAG-AGCCTGCGGGCCTTTGCGTATATGTCAGCTTACGG--CTGTAAAACCGTGGCAAG 1894
Query 14561 GGCGATAGCCTATCGTGAGAATTTCAGCCAGCGTGAGTTGATGGTTATCTGGCCTGATTT 14620
||||| | || || || || |||||||||||||| ||| ||||||||||||| ||
Sbjct 1893 AGCGATCACTTACCGCGACAACTTCAGCCAGCGTGAAGGAATGATTATCTGGCCTGACTT 1834
Query 14621 CCTCGCGTGGGACACCGTCAAAAATGCCACCGCAACTGCTTACGCCACTGCGCGTGCACT 14680
| | | ||||| || | || || || ||| |||| || || || || ||
Sbjct 1833 CATAAACTTTGACACGGTGCTGCAGGCGGATGCGACCGCT-ACGCTAC-GCCCGCGCCCT 1776
Query 14681 CGGCCTGCGTGCTTACA-TCGACCAGACTGTCGGCTGGCACAAAACCCTGTCTAACGTTG 14739
||| |||| ||| | | ||||| || ||||||||||||||||||||||||||| |
Sbjct 1775 TGGC-TGCGCGCTAAAAATCGACGAGCAAACCGGCTGGCACAAAACCCTGTCTAACGT-G 1718
Query 14740 GTGTACAGGGCGTTACCGGCATCAGTGCCTCAGTGTTCTGGGATTTGCAGGCATCCGGCA 14799
| || | ||||| |||||| | ||| |||||||||||| |||||| | ||||||
Sbjct 1717 GCGTCAACGGCGTAACCGGCTTGTCTGCGGATGTGTTCTGGGATCTGCAGG-ACCCGGCA 1659
Query 14800 CC-GATGCTGACCTGCTCAACAAGGCCGGGGTTACGACGCTGGTACGCAAGGACGGTTTC 14858
| ||||| | ||||| ||| || || || || || || | | ||||| ||||||
Sbjct 1658 ACTGATGCCGGACTGCTGAACCAGAACGACGTCACCACCTTGATCAGGAAGGATGGTTTC 1599
Query 14859 CGTTTCTGGGGTAACCGCA-CCTGCTCAGATGAC-CCGCTTTTTCTGTTTGAGAACTACA 14916
|| ||||||||| |||| |||| ||||| ||||| || | |||||| |||||||
Sbjct 1598 CGCTTCTGGGGTTCCCGCTGCCTGAGT-GATGAATCCGCTGTTCCAGTTTGAAAACTACA 1540
Query 14917 CCCGTACCGCGCAGGTACTGGCCGACACGATGGCTGAAGCGCACATGTGGGCGGTCGATA 14976
|||| ||||||||||||||||| ||||| ||||| || | || ||||||||||| ||||
Sbjct 1539 CCCGCACCGCGCAGGTACTGGCTGACACCATGGCAGAGGGCCATATGTGGGCGGTGGATA 1480
Query 14977 AGCCCATTACCGCCACGCTCATTCGTGACATTGTTGACGGCATCAATGCCAAATTCCGCG 15036
||| ||| | | |||| || || ||| | || || ||| |||||| | |||
Sbjct 1479 TGCCGCTTAACCCGTCGCTGGCCCGCGATATTATCGAAGGTATCCGCGCCAAAATGCGCA 1420
Query 15037 AGCTGAAAACAAACGGCTACATCGTGGACGGTGAATGCTGGTTCGACGAGGAATCG--AA 15094
||| || | |||||| || | | |||||| |||||| | || || | || ||
Sbjct 1419 GCCTGGTAATCAG-GGCTACCTCATCGGCGGTGATTGCTGGATTGATGAC--AGCGTTAA 1363
Query 15095 CGACAAGGAAA-CCCTGAAAGCCGGGAAACTGTATATCGACTACGACTATACGCCGGTTC 15153
|||||| || | ||||||||||||||||||| | |||||||||||||||||||| || |
Sbjct 1362 CGACAAAGACAGCCCTGAAAGCCGGGAAACTCTGGATCGACTACGACTATACGCCAGTGC 1303
Query 15154 CGCCACTGGAGAGCCTGACCCTGCGCCAGCGTATCACCGATAAATATCTGGTGAATCTGG 15213
|||| ||||| | ||||| ||||||||||| ||||| || || |||||| || |
Sbjct 1302 CGCCGCTGGAAAACCTGATGCTGCGCCAGCGCATCACTGACCGTTACCTGGTGGATTTCA 1243
Query 15214 CCGAATCG-GTCAACAGCTAAGGAGCCTGAAATAACATGGCACTACCCCGTAAA-CTCAA 15271
|| | || || | | ||||| | || |||||| |||| || ||| || ||
Sbjct 1242 CC-ACCCGCGTAAGCGCATAAGGGG---GA---CCCATGGCCTTACCACGCAAAGCTAAA 1190
Query 15272 ATATCTGAATAT-GTTCAACGATGGCCTCAGCTACATGGGTGTTGTTGAATCCGTAACGT 15330
| | ||||| || ||||||| || || || ||||| ||| ||||||||| ||
Sbjct 1189 ACACCTGAACATCTTTCAACGCCGGTAACA-CT-GATGGGCATTGCTGAATCCGTCACCC 1132
Query 15331 TGCCGAAGCTGACCCGCAAGCTCGAAAACTATCGCGGCGGCGG-TATG 15377
||||||| | |||||||||| || ||||||||||| ||||| ||||
Sbjct 1131 TGCCGAAATTTTCCCGCAAGCTTGAGAACTATCGCGG-GGCGGCTATG 1085
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 95051102356992
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |