Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20maxima_20[genbank_20GCA_5F002006925.1_202017-03-07] 1,504 sequences; 345,757,338 total letters Query= NC_021774.1 Length=29742 Score E Sequences producing significant alignments: (Bits) Value seq1504 508 1e-139 >seq1504 Length=2444 Score = 508 bits (562), Expect = 1e-139 Identities = 924/1308 (71%), Gaps = 52/1308 (4%) Strand=Plus/Minus Query 14088 GAAATTAATGACGGTACGCGTGTTATTTCCACAGT-AGCGACTGCAGTCGTTGGCATGGT 14146 ||| |||| ||||| || || ||| | || || ||| || || | || |||||||| Sbjct 2358 GAAGTTAACGACGGCACCCGCTCTATCACGACGGTGAGC-ACGGCGATTGTGGGCATGGT 2300 Query 14147 CTGTACAGCCAGCGATGCAGATGCCACGCTGTTTCCCCTCAATGAGCC-GGTGCTGATTA 14205 || || | | ||||| |||||| | |||| || |||||| |||| ||| ||| ||| Sbjct 2299 GTGCACCGGCGATGATGCCGATGCCTCCATGTTCCCGCTCAATAAGCCTGGTACTGCTTA 2240 Query 14206 CCAATGTGCAAAGCGCCATTGCGAAAGCCGGTAAAAAAGGCACGCTGTCTGCTTCCCTGC 14265 || |||| | | ||||| | ||||| || | || |||||| | || ||| Sbjct 2239 CCGATGTACTGACCGCCAGCGGTAAAGCGGGCGAGTCCGGTACGCTGGCCCGCTCACTGG 2180 Query 14266 AGGCAATCGCCGACCAGTCAAAG-CCTGTCACCGTTGTCGTGCGTGTTGCCGAAGGTACC 14324 | || ||||| |||||| |||| || |||||||| || ||||| |||||| | || Sbjct 2179 ACGCGATCGCAGACCAGGCAAAAACCCGTCACCGTAGTGGTGCGCGTTGCCCAGGG---- 2124 Query 14325 GGAGACGACGCAGAAGCGCAGACCACATCCAACATTATCGGCGGCACGGATGAGAACGGT 14384 ||| | |||||| | ||||| || || |||||||||||| | || ||||| Sbjct 2123 -----CGAAACCGAAGCGGAAACCACCTCAAATATTATCGGCGGCGTGACTGCCGACGGT 2069 Query 14385 AAGTACACCGGTATCAAGGCGCTGTTAACTGCCGAAGCGGTCACCGGTGTTAAGCCGCGC 14444 ||| | ||||| || |||||||| | | || | || | | || || || |||||| Sbjct 2068 AAGAAAACCGGCATGAAGGCGCTACTTTCCGC-GCAGTCGCAGCTGGCGTGAAACCGCGC 2010 Query 14445 ATTCT-CGGTGTGCCGGGTCTCGATACGCAGGAGGTTGCAACTGCACT-TGCGTCGGTTT 14502 ||||| ||| |||||||| | |||||||||| || | |||| || || | || Sbjct 2009 ATTCTTCGGCGTGCCGGGGCATGATACGCAGGCCGTATCCACTGAGCTGTGAG-CGTGGC 1951 Query 14503 GTATCAGCCTGCGCGCCTTTG-GT-TATGTCAGCGCATGGGGCTGTAAAACCATTTCCGA 14560 | | |||||||| ||||||| || ||||||||| | || |||||||||| | | Sbjct 1950 GCAG-AGCCTGCGGGCCTTTGCGTATATGTCAGCTTACGG--CTGTAAAACCGTGGCAAG 1894 Query 14561 GGCGATAGCCTATCGTGAGAATTTCAGCCAGCGTGAGTTGATGGTTATCTGGCCTGATTT 14620 ||||| | || || || || |||||||||||||| ||| ||||||||||||| || Sbjct 1893 AGCGATCACTTACCGCGACAACTTCAGCCAGCGTGAAGGAATGATTATCTGGCCTGACTT 1834 Query 14621 CCTCGCGTGGGACACCGTCAAAAATGCCACCGCAACTGCTTACGCCACTGCGCGTGCACT 14680 | | | ||||| || | || || || ||| |||| || || || || || Sbjct 1833 CATAAACTTTGACACGGTGCTGCAGGCGGATGCGACCGCT-ACGCTAC-GCCCGCGCCCT 1776 Query 14681 CGGCCTGCGTGCTTACA-TCGACCAGACTGTCGGCTGGCACAAAACCCTGTCTAACGTTG 14739 ||| |||| ||| | | ||||| || ||||||||||||||||||||||||||| | Sbjct 1775 TGGC-TGCGCGCTAAAAATCGACGAGCAAACCGGCTGGCACAAAACCCTGTCTAACGT-G 1718 Query 14740 GTGTACAGGGCGTTACCGGCATCAGTGCCTCAGTGTTCTGGGATTTGCAGGCATCCGGCA 14799 | || | ||||| |||||| | ||| |||||||||||| |||||| | |||||| Sbjct 1717 GCGTCAACGGCGTAACCGGCTTGTCTGCGGATGTGTTCTGGGATCTGCAGG-ACCCGGCA 1659 Query 14800 CC-GATGCTGACCTGCTCAACAAGGCCGGGGTTACGACGCTGGTACGCAAGGACGGTTTC 14858 | ||||| | ||||| ||| || || || || || || | | ||||| |||||| Sbjct 1658 ACTGATGCCGGACTGCTGAACCAGAACGACGTCACCACCTTGATCAGGAAGGATGGTTTC 1599 Query 14859 CGTTTCTGGGGTAACCGCA-CCTGCTCAGATGAC-CCGCTTTTTCTGTTTGAGAACTACA 14916 || ||||||||| |||| |||| ||||| ||||| || | |||||| ||||||| Sbjct 1598 CGCTTCTGGGGTTCCCGCTGCCTGAGT-GATGAATCCGCTGTTCCAGTTTGAAAACTACA 1540 Query 14917 CCCGTACCGCGCAGGTACTGGCCGACACGATGGCTGAAGCGCACATGTGGGCGGTCGATA 14976 |||| ||||||||||||||||| ||||| ||||| || | || ||||||||||| |||| Sbjct 1539 CCCGCACCGCGCAGGTACTGGCTGACACCATGGCAGAGGGCCATATGTGGGCGGTGGATA 1480 Query 14977 AGCCCATTACCGCCACGCTCATTCGTGACATTGTTGACGGCATCAATGCCAAATTCCGCG 15036 ||| ||| | | |||| || || ||| | || || ||| |||||| | ||| Sbjct 1479 TGCCGCTTAACCCGTCGCTGGCCCGCGATATTATCGAAGGTATCCGCGCCAAAATGCGCA 1420 Query 15037 AGCTGAAAACAAACGGCTACATCGTGGACGGTGAATGCTGGTTCGACGAGGAATCG--AA 15094 ||| || | |||||| || | | |||||| |||||| | || || | || || Sbjct 1419 GCCTGGTAATCAG-GGCTACCTCATCGGCGGTGATTGCTGGATTGATGAC--AGCGTTAA 1363 Query 15095 CGACAAGGAAA-CCCTGAAAGCCGGGAAACTGTATATCGACTACGACTATACGCCGGTTC 15153 |||||| || | ||||||||||||||||||| | |||||||||||||||||||| || | Sbjct 1362 CGACAAAGACAGCCCTGAAAGCCGGGAAACTCTGGATCGACTACGACTATACGCCAGTGC 1303 Query 15154 CGCCACTGGAGAGCCTGACCCTGCGCCAGCGTATCACCGATAAATATCTGGTGAATCTGG 15213 |||| ||||| | ||||| ||||||||||| ||||| || || |||||| || | Sbjct 1302 CGCCGCTGGAAAACCTGATGCTGCGCCAGCGCATCACTGACCGTTACCTGGTGGATTTCA 1243 Query 15214 CCGAATCG-GTCAACAGCTAAGGAGCCTGAAATAACATGGCACTACCCCGTAAA-CTCAA 15271 || | || || | | ||||| | || |||||| |||| || ||| || || Sbjct 1242 CC-ACCCGCGTAAGCGCATAAGGGG---GA---CCCATGGCCTTACCACGCAAAGCTAAA 1190 Query 15272 ATATCTGAATAT-GTTCAACGATGGCCTCAGCTACATGGGTGTTGTTGAATCCGTAACGT 15330 | | ||||| || ||||||| || || || ||||| ||| ||||||||| || Sbjct 1189 ACACCTGAACATCTTTCAACGCCGGTAACA-CT-GATGGGCATTGCTGAATCCGTCACCC 1132 Query 15331 TGCCGAAGCTGACCCGCAAGCTCGAAAACTATCGCGGCGGCGG-TATG 15377 ||||||| | |||||||||| || ||||||||||| ||||| |||| Sbjct 1131 TGCCGAAATTTTCCCGCAAGCTTGAGAACTATCGCGG-GGCGGCTATG 1085 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 95051102356992