Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20maxima_20[genbank_20GCA_5F002006925.1_202017-03-07] 1,504 sequences; 345,757,338 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq7 203 4e-46 seq1 185 1e-40 seq799 89.7 6e-12 seq8 87.8 2e-11 >seq7 Length=22269817 Score = 203 bits (224), Expect = 4e-46 Identities = 225/295 (76%), Gaps = 4/295 (1%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||||||||||||||||||||| ||||||||||| ||||| | | |||| || || ||| Sbjct 8165455 GAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCACGCGCCTCGGCGACCTGG 8165514 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 |||||| ||||||||| ||||| ||||||||| |||||||||||| ||| ||||| Sbjct 8165515 ACCTCCGTCATGAACCTTCCGGCGAGGTTCTCGAGGACGATGCCGTCGGAGGCTGCGAAG 8165574 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 || || || |||||| ||| ||||| |||||| || | || | | |||||||| || Sbjct 8165575 AAGGCGAGCACGTGCGTGACGAAGTGCTTCTCGTCAGCGGTTAGGGCCTCCCAGTGG-CG 8165633 Query 869813 GTG-TC-GGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGT 869870 | | || ||| || || || ||||| |||||||| | ||| || ||||| || |||| Sbjct 8165634 GAGATCTTGCG-AAAGATCAACTTCCTCAGCGGTCCAAAACGACGCTTCGGCTTTCTTGT 8165692 Query 869871 ACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTT 869925 |||| ||||| | ||| |||| | || ||||| | | ||| || | ||| || Sbjct 8165693 ACATTTCCCAAATTTGTGGGTACTGAATCGGGAACATGCAAAATCGATCGGGATT 8165747 Score = 113 bits (124), Expect = 6e-19 Identities = 168/239 (70%), Gaps = 6/239 (3%) Strand=Plus/Plus Query 869219 CCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAG 869278 || ||||| | |||||||| ||||||||||| || ||||| ||||| || ||||| || Sbjct 8165215 CCCGGCATTAACCCGCGCTTTTTGAGCCAAAATATCGCGCAAAAACTCCCTGAGAAGAAA 8165274 Query 869279 ATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTG 869338 || ||||| ||| ||||| |||| | | ||| || || || || ||| | Sbjct 8165275 ATCCCCTCCACGCAAGCAAACGCGATTAATCTCTCCGCGAAAGTCTCCGAGCC------G 8165328 Query 869339 TTGATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCG 869398 | |||||| || | |||||| ||| || || || | || ||||| ||||||||| Sbjct 8165329 TCGATCCAATTTAACGCCCACGTGGCTTTCTTTGCGACGCAGGGAACCGTCTCGATGGCG 8165388 Query 869399 CGAAAGAGGTGGTCCTTTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATA 869457 ||||||| ||| ||||||| | | ||| |||| || || || | || ||||| || Sbjct 8165389 TGAAAGAGACGGTTCTTTTCGTCGGAGTCTTTGATGTAAGTTTCTAGAAGCAGCGAGTA 8165447 Score = 89.7 bits (98), Expect = 6e-12 Identities = 101/133 (76%), Gaps = 2/133 (2%) Strand=Plus/Plus Query 1592165 ACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTT 1592224 || |||||||| | | | || ||||||||||| ||||||||| |||| || ||| Sbjct 5845207 ACGCTCTTTGACCTACTAATGGCGGCCAACTACCTGGACATCAAGAGCTTGCTGGA-CTT 5845265 Query 1592225 G-GGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGAC 1592283 | ||| | |||| || ||||||||||||||||||| || || ||||||||| |||| Sbjct 5845266 GCTCTGCCAAACTGTCGCGGACATGATCAAGGGCAAGTCTCCTGAAGAGATCCGCCAGAC 5845325 Query 1592284 CTTTAACATCAAG 1592296 ||| ||||| || Sbjct 5845326 CTTCCACATCCAG 5845338 >seq1 Length=32082701 Score = 185 bits (204), Expect = 1e-40 Identities = 219/294 (74%), Gaps = 2/294 (1%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||||||||||||||||||||| ||||||||||| ||||| | | |||| | |||||| Sbjct 31016381 GAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCACGCGCCTCGGAGACTTGG 31016322 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 | || |||||||||| | |||| ||||| ||| ||||| || || ||||||||| Sbjct 31016321 ATTTCTTTCATGAACCTGGCGGCGAGGTTTTCGAGGACGATTCCATCCGAGGCGGCGAAG 31016262 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 || || || |||||| |||| ||||| ||||||| | | || || |||| ||| | Sbjct 31016261 AAGGCGAGCACGTGCGTGATGAAGTGTTTCTCGTCGGCCGTTAGGGATTCCCACTGGCGG 31016202 Query 869813 GTGT-CGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTA 869871 ||| | ||| ||||| |||||||| || ||||| | || || ||||| || ||||| Sbjct 31016201 ATGTCCTGCG-ACAGGTCAACCTCCTCCGCCGTCCAAAATGAAGCTTCGGCTTTCTTGTA 31016143 Query 869872 CATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTT 869925 ||| ||||| | || | |||| |||| || || | | || |||| ||||| Sbjct 31016142 CATTTCCCAGATTTCCGGGTACTGGATTGGAAACATGCAGAATCGGTCTGGGTT 31016089 Score = 120 bits (132), Expect = 4e-21 Identities = 175/248 (71%), Gaps = 6/248 (2%) Strand=Plus/Minus Query 869210 AAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCC 869269 |||| ||||| ||||| | |||||||| || | |||||| || ||||||||||||||| Sbjct 31016630 AAGGTTAGGCCCGGCATTAACCCGCGCTTTTTCAACCAAAATATCGCGCAGAAACTGCCC 31016571 Query 869270 GAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGG 869329 ||||| || || || || ||| ||||| | || || | ||| || || || || | Sbjct 31016570 GAGAAGAATATCCCTTCCACGCAAGCAAACGCTATCAGTCTCTCCGCGAATGTCTCCGAG 31016511 Query 869330 CCCTCCTTGTTGATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTG 869389 || || |||||| || | ||||| ||||||||||| || ||||||| || Sbjct 31016510 CC------GTCGATCCAATTTAGGGCCCAATCGGCCTTTTTGGCAACGCACGGCACAGTT 31016457 Query 869390 TCGATGGCGCGAAAGAGGTGGTCCTTTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGG 869449 || | ||||||||| | | || ||||||| | | || || | || || || | ||| Sbjct 31016456 TCAAAGGCGCGAAATAAGCGGCTCTTTTCGTCGGAGTTTTTTATGTACGTTTCTAGAAGG 31016397 Query 869450 AGCGAATA 869457 ||||| || Sbjct 31016396 AGCGAGTA 31016389 Score = 96.9 bits (106), Expect = 4e-14 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 || || |||||||| |||||||| ||||| || ||| ||| || |||| || || Sbjct 683640 GCTGCAAACTACCTGAACATCAAGGGGCTGCTGGACCTTACCTGCCAGACTGTTGCTGAC 683581 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAG 1592296 ||||||||||| ||| | || |||||||| || |||||||||||||||||| Sbjct 683580 ATGATCAAGGGAAAGACTCCGGAGGAGATTCGAAAGACCTTTAACATCAAG 683530 >seq799 Length=43274 Score = 89.7 bits (98), Expect = 6e-12 Identities = 101/133 (76%), Gaps = 2/133 (2%) Strand=Plus/Plus Query 1592165 ACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTT 1592224 || |||||||| | | | || ||||||||||| ||||||||| |||| || ||| Sbjct 19742 ACGCTCTTTGACCTACTAATGGCGGCCAACTACCTGGACATCAAGAGCTTGCTGGA-CTT 19800 Query 1592225 G-GGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGAC 1592283 | ||| | |||| || ||||||||||||||||||| || || ||||||||| |||| Sbjct 19801 GCTCTGCCAAACTGTCGCGGACATGATCAAGGGCAAGTCTCCTGAAGAGATCCGCCAGAC 19860 Query 1592284 CTTTAACATCAAG 1592296 ||| ||||| || Sbjct 19861 CTTCCACATCCAG 19873 >seq8 Length=21028080 Score = 87.8 bits (96), Expect = 2e-11 Identities = 88/112 (79%), Gaps = 2/112 (2%) Strand=Plus/Plus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGG-TGCAAGTCTGTGGCCAA 1592244 || ||||| ||||| |||| ||| | |||| || |||| ||| | |||| || | Sbjct 6294037 GCAGCCAATTACCTGAACATTAAGGGTTTGCTGGA-CTTGACCTGCCAAACTGTTGCAGA 6294095 Query 1592245 CATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAG 1592296 |||||||||||| ||| | || |||||||||||||||||||| ||||||||| Sbjct 6294096 CATGATCAAGGGGAAGACTCCAGAGGAGATCCGCAAGACCTTCAACATCAAG 6294147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107015774716768