Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20maxima_20[genbank_20GCA_5F002006925.1_202017-03-07] 1,504 sequences; 345,757,338 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq1288 93.3 3e-14 seq6 89.7 4e-13 seq2 89.7 4e-13 >seq1288 Length=1199740 Score = 93.3 bits (102), Expect = 3e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 110366 GACAAAGAAGGCGTGCCCGTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAG 110425 ||||| |||||| | || |||||| || ||||| |||| ||| |||||||| |||| Sbjct 1162949 GACAAGGAAGGCATTCCTCCGGATCAGCAGAGACTGATTTTTGCTGGTAAACAATTGGAA 1162890 Query 110426 GATGCCAGAACAATGGCGGATTACAACATTCAAAAAGAATCTACGTTGCACATGGT 110481 |||| |||||| | || ||||| ||||||||||| || || ||| | ||| |||| Sbjct 1162889 GATGGCAGAACGCTTGCAGATTATAACATTCAAAAGGAGTCGACGCTTCACTTGGT 1162834 >seq6 Length=23636167 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 || ||||| |||||||| ||||| | |||||||| || || ||| ||||| |||| Sbjct 4424003 AAGATGCAGATATTTGTGAAAACCCTCACCGGCAAGACAATCACCCTCGAAGTGGAGAGC 4424062 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| || ||| | | || || ||||| ||||| || || | || ||| Sbjct 4424063 TCCGACACAATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATTCCGCCGGAC 4424122 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || || | || || | ||| || || || || || || | | | || |||| |||||| Sbjct 4424123 CAGCAGCGTCTCATCTTTGCCGGGAAGCAACTCGAAGACGGCCGCACTTTGGCCGATTAC 4424182 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 ||||||||||||||||| || ||||| | || | || || || || |||| Sbjct 4424183 AACATTCAAAAAGAATCCACTTTGCATCTTGTCCTCAGGCTTCGTGGTGGAA 4424234 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || ||||| ||| | ||||| || || || ||| | || |||| | Sbjct 3889328 ATGCAGATCTTCGTCAAGACTCTGACCGGGAAGACGATCACCCTGGAGGTGGAGAGCTCC 3889387 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | | || || |||||| ||||| ||||| | ||| ||| || Sbjct 3889388 GACACGATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAAGGGATCCCCCCGGACCAG 3889447 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || || || | || || || ||||||||||| | | | || |||| ||||| ||| Sbjct 3889448 CAGAGGCTCATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTGGCCGATTATAAC 3889507 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 || || || ||||| ||| | ||| | ||||| | ||| | || |||| Sbjct 3889508 ATCCAGAAGGAATCCACGCTCCACCTTGTGTTGCGCCTGAGGGGAGGAA 3889556 >seq2 Length=53008150 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| ||||| || ||| | ||||| |||||||| ||| | || || | Sbjct 27088352 ATGCAAATCTTTGTGAAGACTCTCACCGGAAAAACCATAACCCTTGAGGTTGAAAGCTCC 27088293 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| ||| | || ||| ||||| ||||| ||||| | || ||||| Sbjct 27088292 GATACCATCGATAATGTCAAAGCTAAGATCCAGGACAAGGAAGGGATTCCACCAGATCAG 27088233 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || ||||| | ||| ||||||||||| ||||||| | ||| | || ||||| ||| Sbjct 27088232 CAGAGGCTTATCTTTGCTGGTAAACAGCTTGAGGATGGGCGCACACTCGCCGATTATAAC 27088173 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGT 110481 || || || || || || ||||| |||| Sbjct 27088172 ATCCAGAAGGAGTCGACCCTGCACTTGGT 27088144 Score = 82.4 bits (90), Expect = 6e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 110402 ATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAACATTCAAAAA 110461 |||| ||| || || ||||| || |||| || || | || |||||||||||||| || Sbjct 27083458 ATTTTTGCAGGCAAGCAGCTTGAAGATGGGAGGACCCTTGCAGATTACAACATTCAGAAG 27083399 Query 110462 GAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 ||||| || ||||| ||||||| |||||||| || |||| Sbjct 27083398 GAATCCACATTGCATTTGGTGTTGAGACTGCGTGGAGGAA 27083359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412834032613472