Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20maxima_20[genbank_20GCA_5F002006925.1_202017-03-07] 1,504 sequences; 345,757,338 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq7 168 1e-35 seq1 156 7e-32 seq6 118 2e-20 >seq7 Length=22269817 Score = 168 bits (186), Expect = 1e-35 Identities = 208/285 (73%), Gaps = 6/285 (2%) Strand=Plus/Plus Query 794380 CCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAG 794439 || ||||| | |||||||| ||||||||||| || || || ||||| || ||||| || Sbjct 8165215 CCCGGCATTAACCCGCGCTTTTTGAGCCAAAATATCGCGCAAAAACTCCCTGAGAAGAAA 8165274 Query 794440 ATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTG 794499 || ||||| ||| ||||| ||| | | ||| || ||||| ||| ||| || Sbjct 8165275 ATCCCCTCCACGCAAGCAAACGCGATTAATCTCTCCGCGAAAGTCTCCGAGCCGTC---- 8165330 Query 794500 TTGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCG 794559 |||||| || | ||||||| || || || || |||| ||||| ||||||||| Sbjct 8165331 --GATCCAATTTAACGCCCACGTGGCTTTCTTTGCGACGCAGGGAACCGTCTCGATGGCG 8165388 Query 794560 CGAAAGAGGTGGTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAG 794619 ||||||| ||| ||| ||| | | ||| |||| ||| || || | || |||||||| Sbjct 8165389 TGAAAGAGACGGTTCTTTTCGTCGGAGTCTTTGATGTAAGTTTCTAGAAGCAGCGAGTAC 8165448 Query 794620 GTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAAG 794664 | || ||||||||||| ||||||||||| |||||||| || ||| Sbjct 8165449 ATTTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAG 8165493 Score = 149 bits (164), Expect = 1e-29 Identities = 197/268 (74%), Gaps = 4/268 (1%) Strand=Plus/Plus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||||| || ||||||||| ||||||| | ||||| |||||||| ||||||||| Sbjct 8165500 GCCTCGGCGACCTGGACCTCCGTCATGAACCTTCCGGCGAGGTTCTCGAGGACGATGCCG 8165559 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 ||| ||| ||||| |||||||| |||||| ||| ||||| |||||| || | || Sbjct 8165560 TCGGAGGCTGCGAAGAAGGCGAGCACGTGCGTGACGAAGTGCTTCTCGTCAGCGGTTAGG 8165619 Query 796270 GAGACCCAGTGGACCGTG-TC-GGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGG 796327 | |||||||| | | | || ||| || || || ||||| ||||||||||| || | Sbjct 8165620 GCCTCCCAGTGG-CGGAGATCTTGCG-AAAGATCAACTTCCTCAGCGGTCCAAAACGACG 8165677 Query 796328 CCTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACAGAACAAAGC 796387 | ||||| || |||||||| ||||| || || |||| | || ||||||| ||| | Sbjct 8165678 CTTCGGCTTTCTTGTACATTTCCCAAATTTGTGGGTACTGAATCGGGAACATGCAAAATC 8165737 Query 796388 GATTGGGGTTCTCGCGTAGCAGCGGCTC 796415 ||| ||| || | ||| |||||||| Sbjct 8165738 GATCGGGATTTGGGGCTAGAAGCGGCTC 8165765 Score = 86.0 bits (94), Expect = 1e-10 Identities = 147/208 (71%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 793926 TCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGCC 793985 || || || || ||||| || | ||||||||||| ||||||||| || || || || Sbjct 8164888 TCAAAGAAATTAGTCTTCCCTTGGAGCGAGATCAGCTCCATCCAATCAAAAGGATTCCCC 8164947 Query 793986 GTCAGGTAGTGCTTCTCGCACCCGAGCG-ACGCAAGCAGGCGGTCGGCGACGAATTCAAT 794044 ||| ||||| || |||| |||| || ||| || | || ||||| || || || Sbjct 8164948 ACACCGTACAGCTTCCCGTACCCAAGCGCACCCAA-CAATCTATCCGCGACAAACTCTAT 8165006 Query 794045 GTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGC-CACGGGCAGCGACTCGCTGA 794103 |||||| | ||| | | | ||||| || | | ||| ||| ||||||| |||| | Sbjct 8165007 GTACTGACTCATCAATTCTCCATTCATCCCCACCAACGCGCAC-GGCAGCGCATCGCACA 8165065 Query 794104 CAAACTCTTTCTCGATCTCGACGGCCTC 794131 |||||||| |||| ||||| || ||||| Sbjct 8165066 CAAACTCTCTCTCTATCTCCACCGCCTC 8165093 >seq1 Length=32082701 Score = 156 bits (172), Expect = 7e-32 Identities = 207/288 (72%), Gaps = 6/288 (2%) Strand=Plus/Minus Query 794377 AGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAA 794436 ||||| ||||| | |||||||| || | |||||| || || ||||||||||||||||| Sbjct 31016624 AGGCCCGGCATTAACCCGCGCTTTTTCAACCAAAATATCGCGCAGAAACTGCCCGAGAAG 31016565 Query 794437 AAGATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCT 794496 || || || || ||| ||||| | | || | ||| || || || ||| ||| || Sbjct 31016564 AATATCCCTTCCACGCAAGCAAACGCTATCAGTCTCTCCGCGAATGTCTCCGAGCCGTC- 31016506 Query 794497 TTGTTGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATG 794556 |||||| || | ||||| || |||||||| || | ||||| || || | | Sbjct 31016505 -----GATCCAATTTAGGGCCCAATCGGCCTTTTTGGCAACGCACGGCACAGTTTCAAAG 31016451 Query 794557 GCGCGAAAGAGGTGGTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAG 794616 |||||||| | | || ||| ||| | | || || | ||| || || | ||||||||| Sbjct 31016450 GCGCGAAATAAGCGGCTCTTTTCGTCGGAGTTTTTTATGTACGTTTCTAGAAGGAGCGAG 31016391 Query 794617 TAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAAG 794664 || | || ||||||||||| ||||||||||| |||||||| || ||| Sbjct 31016390 TACATTTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAG 31016343 Score = 143 bits (158), Expect = 4e-28 Identities = 196/269 (73%), Gaps = 6/269 (2%) Strand=Plus/Minus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||||| ||||||| || |||||||| | | |||| ||||| || ||||| || Sbjct 31016336 GCCTCGGAGACTTGGATTTCTTTCATGAACCTGGCGGCGAGGTTTTCGAGGACGATTCCA 31016277 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 || ||||||||| |||||||| |||||| |||| ||||| ||||||| | | || Sbjct 31016276 TCCGAGGCGGCGAAGAAGGCGAGCACGTGCGTGATGAAGTGTTTCTCGTCGGCCGTTAGG 31016217 Query 796270 GAGACCCAGTGGACCGTGTCG-GCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGC 796328 || |||| ||| |||| ||| | ||||| |||||||| || |||||||| || || Sbjct 31016216 GATTCCCACTGGCGGATGTCCTGCGAC-AGGTCAACCTCCTCCGCCGTCCAAAATGAAGC 31016158 Query 796329 CTCGGCCTTTTTGTACATCTCCCATAT--CCGTTGGTAGCGGATGGGGAACAGAACAAAG 796386 ||||| || |||||||| ||||| || ||| |||| |||| || |||| || Sbjct 31016157 TTCGGCTTTCTTGTACATTTCCCAGATTTCCG--GGTACTGGATTGGAAACATGCAGAAT 31016100 Query 796387 CGATTGGGGTTCTCGCGTAGCAGCGGCTC 796415 || | |||||| | |||||||||||| Sbjct 31016099 CGGTCTGGGTTCGGGGTTAGCAGCGGCTC 31016071 Score = 86.0 bits (94), Expect = 1e-10 Identities = 150/212 (71%), Gaps = 10/212 (5%) Strand=Plus/Minus Query 793925 CTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGC 793984 ||| || || || ||||| || | ||||| |||||||||||||| ||||| || Sbjct 31016949 CTCAAAGAAATTCGTCTTCCCTTGCAGCGAAATCAACTCCATCCAATCAAACGGATT--- 31016893 Query 793985 CGTCAGGTAGTGC---TTCTCGCACCCGAGCG-ACGCAAGCAGGCGGTCGGCGACGAATT 794040 ||||| | || | ||| |||||||||||| || ||| || | || || || || | Sbjct 31016892 CGTCACGCCGTACACCTTCCCGCACCCGAGCGCACCCAA-CAACCTATCTGCCACAAACT 31016834 Query 794041 CAATGTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGC-CACGGGCAGCGACTCG 794099 | |||||||| | ||| | || ||||||| || | | || ||| ||||||| ||| Sbjct 31016833 CTATGTACTGACTCATCAACGCCCCGTTCATCCCCACCAATGCGCAC-GGCAGCGCGTCG 31016775 Query 794100 CTGACAAACTCTTTCTCGATCTCGACGGCCTC 794131 | || ||||| |||| ||||| || ||||| Sbjct 31016774 CACACGAACTCCCTCTCTATCTCCACCGCCTC 31016743 >seq6 Length=23636167 Score = 118 bits (130), Expect = 2e-20 Identities = 174/244 (71%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || ||||||| ||||||||||| ||||| || ||||||||| |||||| ||| ||| ||| Sbjct 6524139 TGAACTTGGTAACGGCCTTGGTCCCCTCCGACACGGCGTGCTTGGCCAATTCACCGGGCA 6524080 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || || | |||||||||||||||||| | | |||||| |||||| | Sbjct 6524079 AGACCAATCTCACGGCGGTCTGGATCTCCCTCGACGTGATCGTCGGCTTCTTGTTGTACC 6524020 Query 1485590 GCGCCAGGCGGCCGGCCTC-GGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 ||| || || ||||| | ||| || |||| |||||||||| || |||| Sbjct 6524019 TCGCGAGACGAGACGCCTCTTGGGCCAAT-TTCTCGAAGATGTCGTTGATGAAACTGTTC 6523961 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||||| ||| | ||| ||||||| || | || || || |||||||| || |||||| Sbjct 6523960 ATGATACCCATGGCCTTGCTGGAGATACCGATATCTGGATGAACCTGCTTCAGGACCTTG 6523901 Query 1485709 TAAA 1485712 ||| Sbjct 6523900 AAAA 6523897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916086412660256