Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20maxima_20[genbank_20GCA_5F002006925.1_202017-03-07] 1,504 sequences; 345,757,338 total letters Query= NC_022750.1 Length=33628 Score E Sequences producing significant alignments: (Bits) Value seq1504 401 1e-107 >seq1504 Length=2444 Score = 401 bits (444), Expect = 1e-107 Identities = 911/1330 (68%), Gaps = 60/1330 (5%) Strand=Plus/Minus Query 15994 CATGGCGTGCAGGTGCTGGAGA--TTAACGACGGCACCCGCGTCATTTCCACCGTATCCA 16051 || ||||||| | || || ||| ||||||||||||||||| || | || || || Sbjct 2377 CACGGCGTGC-GCTGTTGTAGAAGTTAACGACGGCACCCGCTCTATCACGACGGTGAGCA 2319 Query 16052 CGGCCATTGTCGGCATGGTCTGCACGGCCAGCGATGCGGATGCGGAAACCTTCCCCCTCA 16111 |||| ||||| |||||||| ||||| | | ||||| ||||| | ||||| |||| Sbjct 2318 CGGCGATTGTGGGCATGGTGTGCACCGGCGATGATGCCGATGCCTCCATGTTCCCGCTCA 2259 Query 16112 ATAAACC-GGTGCTGATTACCAATGTGCAGAGCGCAATTGCAAAGGCCGGTAAAACAGGC 16170 |||| || ||| ||| ||||| |||| | || ||| | | || || || | | || Sbjct 2258 ATAAGCCTGGTACTGCTTACCGATGTACTGACCGCCAGCGGTAAAGCGGGCGAGTCCGGT 2199 Query 16171 ACGCTGGCGGCATCGTTGCAGGCCATCGCTGACCAGTCAAAA-CCGGTCACCGTTGTCGT 16229 |||||||| || || | || ||||| |||||| ||||| || |||||||| || || Sbjct 2198 ACGCTGGCCCGCTCACTGGACGCGATCGCAGACCAGGCAAAAACCCGTCACCGTAGTGGT 2139 Query 16230 GCGTGTGGAAGACGGCACCGGCGAAGACGAAGAAACGAAGCTCGCGCAGACCGTTTCCAA 16289 ||| || | | ||| ||| | |||||| | | ||| || || Sbjct 2138 GCGCGTTGCCCAGGGC------------GAA--ACCGAAGC----GGAAACCACCTCAAA 2097 Query 16290 TATCATCGGCACC---ACCGACGAAAACGGTCAGTACACCGGACTGAAAGCCCTGCTGGC 16346 ||| |||||| | || | ||| |||| || | ||||| |||| || || || | Sbjct 2096 TATTATCGGCGGCGTGACTGCCGA---CGGTAAGAAAACCGGCATGAAGGCGCTACTTTC 2040 Query 16347 GGCGGAGTCGGTAACCGGTGTTAAACCGCGTATTCT-CGGCGTGCCGGGACTGGATACCA 16405 ||| ||||| | | || || |||||||| ||||| |||||||||||| | ||||| Sbjct 2039 CGCGCAGTCGC-AGCTGGCGTGAAACCGCGCATTCTTCGGCGTGCCGGGGCATGATACGC 1981 Query 16406 AAGAGGTGGCTGTTGCACTGGCATCTGTCTGTCAGAAGTTGCGCGCTTTCGGGTATATCA 16465 | | || | || ||| | | || |||| |||| || || | |||||| Sbjct 1980 AGGCCGTATCCACTGAGCTGTGAGC-GTGGCGCAGAGCCTGCGGGCCTTTGCGTATATGT 1922 Query 16466 GCGCATGGGGCTGTAAAACCATTTCCGAGGTGAAAGCCTACCGCCAGAATTTCAGCCAGC 16525 || | |||||||||||| | | | || | |||||| | || |||||||||| Sbjct 1921 CAGCTTACGGCTGTAAAACCGTGGCAAGAGCGATCACTTACCGCGACAACTTCAGCCAGC 1862 Query 16526 GTGAGCTGATGGTCATCTGGCCGGATTTCCTCGCATGGGATACGGT-CAGCAGCACCACC 16584 |||| ||| | |||||||| || ||| | | || ||||| | |||| | Sbjct 1861 GTGAAGGAATGATTATCTGGCCTGACTTCATAAACTTTGACACGGTGCTGCAGGCGGAT- 1803 Query 16585 GCCACCGCGTATGCCACCGCCCGTGCGCTGGGTCTGCGTGCCAAAA-TCGACCAGGAGCA 16643 || ||||| || || || ||||| || || || ||||| || |||| ||||| || | Sbjct 1802 GCGACCGC-TACGCTAC-GCCCGCGCCCTTGG-CTGCGCGCTAAAAATCGACGAGCAAAC 1746 Query 16644 GGGCTGGCATAAAACGCTGTCCAACGTCGGGGTGAACGGTGTTACCGGCATCAGCGCCTC 16703 |||||||| ||||| ||||| ||||| || || ||||| || |||||| | || Sbjct 1745 CGGCTGGCACAAAACCCTGTCTAACGT-GGCGTCAACGGCGTAACCGGCTTGTCTGCGGA 1687 Query 16704 TGTATTCTGGGATTTGCAGGAGTCCGGCACC-GATGCTGACCTGTTGAACGAGTCAGGTG 16762 ||| ||||||||| ||||||| |||||| | ||||| | ||| ||||| || | | Sbjct 1686 TGTGTTCTGGGATCTGCAGGAC-CCGGCAACTGATGCCGGACTGCTGAACCAGAACGACG 1628 Query 16763 TCACAACGCTGATTCGCCGTGACGGTTTCCGCTTCTGGGGTAACCG-TACCTGCTCTGAT 16821 |||| || |||| | || |||||||||||||||||| ||| | |||| |||| Sbjct 1627 TCACCACCTTGATCAGGAAGGATGGTTTCCGCTTCTGGGGTTCCCGCTGCCTGAG-TGAT 1569 Query 16822 GAC-CCGCTGTTCCTCTTTGAAAACTACACCCGCACCGCGCAGGTGCTGGCCGACACGAT 16880 || |||||||||| ||||||||||||||||||||||||||||| ||||| ||||| || Sbjct 1568 GAATCCGCTGTTCCAGTTTGAAAACTACACCCGCACCGCGCAGGTACTGGCTGACACCAT 1509 Query 16881 GGCTGAGGCGCACATGTGGGCGGTGGACAAGCCCATCACTGCAACGCTGATTCGCGACAT 16940 ||| |||| || |||||||||||||| | ||| | | | ||||| ||||| || Sbjct 1508 GGCAGAGGGCCATATGTGGGCGGTGGATATGCCGCTTAACCCGTCGCTGGCCCGCGATAT 1449 Query 16941 CGTTGACGGCATCAATGCCAAATTCCGTGAGCTGAAAACAAACGGCTATATCGT-GGATG 16999 | || || ||| |||||| | || ||| || | ||||| || | || | Sbjct 1448 TATCGAAGGTATCCGCGCCAAAATGCGCAGCCTGGTAA-TCAGGGCTACCTCATCGGCGG 1390 Query 17000 CGACCTGCTGG-TTCAGCGAAGAATCCAACGATGCGGA-AACCCTCAAGGCCGGAAAACT 17057 || |||||| || | || | ||||| || | |||| || ||||| ||||| Sbjct 1389 TGA-TTGCTGGATTGATGACAGCGT-TAACGACAAAGACAGCCCTGAAAGCCGGGAAACT 1332 Query 17058 GTATATCGACTACGACTATACACCGGTGCCTCCTCTCGAAAACCTGACCCTGCGCCAGCG 17117 | ||||||||||||||||| || ||||| || || |||||||||| ||||||||||| Sbjct 1331 CTGGATCGACTACGACTATACGCCAGTGCCGCCGCTGGAAAACCTGATGCTGCGCCAGCG 1272 Query 17118 TATTACCGATAAATACCTGGCAAATCTGGTCACCTCGGTTAACAGCAATTAAGGAGCCTG 17177 || || || ||||||| || | |||| || ||| ||| ||||| | | Sbjct 1271 CATCACTGACCGTTACCTGGTGGATTTCACCACC-CGCGTAAGCGCA--TAAGGGG---G 1218 Query 17178 ACCGATGGCAATGCCGCGCAAA-CTCAAGTTAATGAACGTCTTTCTGAACGGCTACAGCT 17236 ||| ||||| | || |||||| || || ||||| |||||| |||| | | | Sbjct 1217 ACCCATGGCCTTACCACGCAAAGCTAAAACACCTGAACATCTTTC--AACGCCGGTAACA 1160 Query 17237 ATCA-GGGCGTTGCAAAGTCCGTCACGCTGCCAAAACTGACCCGTAAGCTCGAAAACTAT 17295 | | |||| |||| | |||||||| ||||| ||| | |||| ||||| || |||||| Sbjct 1159 CTGATGGGCATTGCTGAATCCGTCACCCTGCCGAAATTTTCCCGCAAGCTTGAGAACTAT 1100 Query 17296 CGCGGTGCGG 17305 ||||| |||| Sbjct 1099 CGCGGGGCGG 1090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 107486080264320