Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20maxima_20[genbank_20GCA_5F002006925.1_202017-03-07]
1,504 sequences; 345,757,338 total letters
Query= NC_023426.1
Length=245717
Score E
Sequences producing significant alignments: (Bits) Value
seq2 100 4e-16
seq1288 96.9 5e-15
seq6 87.8 3e-12
>seq2
Length=53008150
Score = 100 bits (110), Expect = 4e-16
Identities = 147/208 (71%), Gaps = 0/208 (0%)
Strand=Plus/Minus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
|||| || || | ||||| | |||||||||||||| ||| |||| |||||| |
Sbjct 27087667 TGCAGATTTTTGTGAAAACCCTGACAGGAAAAACAATCACTCTTGAGGTAGAAAGCTCTG 27087608
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
| || || | ||||| ||| ||||| ||| || || || || ||||| ||||| |
Sbjct 27087607 ACACCGTTGACAATGTGAAAGCCAAAATTCAAGACAAGGAGGGTATCCCACCAGATCAGC 27087548
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
| || ||||||||||| || || || | || ||| || || | |||| ||||| |
Sbjct 27087547 AGAGGCTCATTTTTGCTGGAAAGCAGCTTGAAGATGGAAGGACTCTTGCAGACTATAACA 27087488
Query 146212 TACAAAAAGAATCGACTATCCATTTAGT 146239
| || |||||||| ||| |||| || ||
Sbjct 27087487 TCCAGAAAGAATCCACTCTCCACTTGGT 27087460
Score = 91.5 bits (100), Expect = 2e-13
Identities = 145/208 (70%), Gaps = 0/208 (0%)
Strand=Plus/Minus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
|||| || || | ||||| | || ||||||||||||||| |||| || ||| | |
Sbjct 27127305 TGCAGATCTTTGTGAAAACGCTCACCGGAAAAACAATTACTCTTGAGGTTGAAAGTTCTG 27127246
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
| || || | || || ||| ||||| ||| || || || || ||||| ||||| |
Sbjct 27127245 ACACCATCGACAACGTGAAAGCAAAAATTCAAGACAAGGAGGGTATCCCACCAGATCAGC 27127186
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
| || ||||||||||| || || || | || ||| || || | |||| ||||| |
Sbjct 27127185 AGAGGCTCATTTTTGCTGGAAAGCAGCTTGAAGATGGAAGGACTCTTGCAGACTATAACA 27127126
Query 146212 TACAAAAAGAATCGACTATCCATTTAGT 146239
| || |||||||| ||| | || || ||
Sbjct 27127125 TCCAGAAAGAATCCACTCTTCACTTGGT 27127098
Score = 84.2 bits (92), Expect = 3e-11
Identities = 145/211 (69%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
||||||| || | || || | || ||||||||||| ||| | || ||||| | |
Sbjct 27083586 TGCAAATTTTTGTGAAGACTCTCACTGGAAAAACAATCACTCTGGAGGTAGAGAGTTCGG 27083527
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
| || ||| | ||||| || || || ||| ||| || ||||||||||| || || |
Sbjct 27083526 ACACGATTGATAATGTGAAGGCCAAGATCCAAGATAAGGAGGGCATTCCACCAGACCAGC 27083467
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
| || | ||||||||||| || || | || ||| || || | ||||||| || |
Sbjct 27083466 AGAGGTTGATTTTTGCAGGCAAGCAGCTTGAAGATGGGAGGACCCTTGCAGATTACAACA 27083407
Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATT 146242
| || || ||||| || | ||||| || ||
Sbjct 27083406 TTCAGAAGGAATCCACATTGCATTTGGTGTT 27083376
>seq1288
Length=1199740
Score = 96.9 bits (106), Expect = 5e-15
Identities = 82/101 (81%), Gaps = 0/101 (0%)
Strand=Plus/Minus
Query 146127 AAAGAAGGCATTCCACCCGATCAACAAAGACTCATTTTTGCAGGTAAACAATTAGATGAT 146186
|| ||||||||||| || ||||| || ||||| |||||||| ||||||||||| || |||
Sbjct 1162946 AAGGAAGGCATTCCTCCGGATCAGCAGAGACTGATTTTTGCTGGTAAACAATTGGAAGAT 1162887
Query 146187 AATAGAACGTTAACAGATTATAATATACAAAAAGAATCGAC 146227
|||||| | |||||||||| || ||||| || |||||
Sbjct 1162886 GGCAGAACGCTTGCAGATTATAACATTCAAAAGGAGTCGAC 1162846
>seq6
Length=23636167
Score = 87.8 bits (96), Expect = 3e-12
Identities = 141/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
|||| || ||| | || || | || || ||||||||||| | || || || | |
Sbjct 4424463 TGCAGATTTTCGTCAAGACTCTTACTGGGAAAACAATTACCCTGGAGGTGGAGAGTTCTG 4424522
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
|||| ||| | ||||| || ||| || || ||| ||||| |||||||| ||||| |
Sbjct 4424523 ATACCATTGACAATGTCAAGGCTAAGATTCAGGATAAGGAAGGGATTCCACCTGATCAGC 4424582
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
| || ||||| ||||| || || || | || ||| | || ||| | |||||||| |
Sbjct 4424583 AGAGGCTCATCTTTGCTGGGAAGCAGCTTGAGGATGGCCGTACTTTAGCTGATTATAACA 4424642
Query 146212 TACAAAAAGAATCGACTATCCAT 146234
| ||||| || || || |||||
Sbjct 4424643 TTCAAAAGGAGTCCACCCTCCAT 4424665
Score = 86.0 bits (94), Expect = 1e-11
Identities = 137/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
|||| || ||| | ||||| |||| || || || || ||| | || || || | |
Sbjct 4366274 TGCAGATCTTCGTCAAAACCCTAACTGGGAAGACGATCACTCTCGAGGTGGAGAGTTCAG 4366333
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
|||| ||| | ||||| || || || ||| || || || || ||||| |||||||
Sbjct 4366334 ATACGATTGATAATGTCAAGGCCAAGATCCAAGACAAGGAGGGGATCCCACCAGATCAAC 4366393
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
||||| | || ||||| || |||||||| || || | ||||| | || |||||||
Sbjct 4366394 AAAGATTGATCTTTGCTGGAAAACAATTGGAAGACGGCCGTACGTTGGCTGACTATAATA 4366453
Query 146212 TACAAAAAGAATCGACT 146228
| || ||||| || |||
Sbjct 4366454 TCCAGAAAGAGTCAACT 4366470
Score = 86.0 bits (94), Expect = 1e-11
Identities = 137/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
|||| || ||| | ||||| |||| || || || || ||| | || || || | |
Sbjct 4416811 TGCAGATCTTCGTCAAAACCCTAACTGGGAAGACGATCACTCTCGAGGTGGAGAGTTCAG 4416870
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
|||| ||| | ||||| || || || ||| || ||||| || ||||| |||||||
Sbjct 4416871 ATACGATTGATAATGTCAAGGCCAAGATCCAAGACAAGGAAGGGATCCCACCAGATCAAC 4416930
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
||||| | || ||||| || |||||||| || || | ||||| | || ||||| |
Sbjct 4416931 AAAGATTGATCTTTGCCGGAAAACAATTGGAAGACGGCCGCACGTTGGCTGACTATAACA 4416990
Query 146212 TACAAAAAGAATCGACT 146228
| || ||||| || |||
Sbjct 4416991 TCCAGAAAGAGTCAACT 4417007
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 786151620071680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |