Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20maxima_20[genbank_20GCA_5F002006925.1_202017-03-07] 1,504 sequences; 345,757,338 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq2 100 4e-16 seq1288 96.9 5e-15 seq6 87.8 3e-12 >seq2 Length=53008150 Score = 100 bits (110), Expect = 4e-16 Identities = 147/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | ||||| | |||||||||||||| ||| |||| |||||| | Sbjct 27087667 TGCAGATTTTTGTGAAAACCCTGACAGGAAAAACAATCACTCTTGAGGTAGAAAGCTCTG 27087608 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || | ||||| ||| ||||| ||| || || || || ||||| ||||| | Sbjct 27087607 ACACCGTTGACAATGTGAAAGCCAAAATTCAAGACAAGGAGGGTATCCCACCAGATCAGC 27087548 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || ||||||||||| || || || | || ||| || || | |||| ||||| | Sbjct 27087547 AGAGGCTCATTTTTGCTGGAAAGCAGCTTGAAGATGGAAGGACTCTTGCAGACTATAACA 27087488 Query 146212 TACAAAAAGAATCGACTATCCATTTAGT 146239 | || |||||||| ||| |||| || || Sbjct 27087487 TCCAGAAAGAATCCACTCTCCACTTGGT 27087460 Score = 91.5 bits (100), Expect = 2e-13 Identities = 145/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | ||||| | || ||||||||||||||| |||| || ||| | | Sbjct 27127305 TGCAGATCTTTGTGAAAACGCTCACCGGAAAAACAATTACTCTTGAGGTTGAAAGTTCTG 27127246 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || | || || ||| ||||| ||| || || || || ||||| ||||| | Sbjct 27127245 ACACCATCGACAACGTGAAAGCAAAAATTCAAGACAAGGAGGGTATCCCACCAGATCAGC 27127186 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || ||||||||||| || || || | || ||| || || | |||| ||||| | Sbjct 27127185 AGAGGCTCATTTTTGCTGGAAAGCAGCTTGAAGATGGAAGGACTCTTGCAGACTATAACA 27127126 Query 146212 TACAAAAAGAATCGACTATCCATTTAGT 146239 | || |||||||| ||| | || || || Sbjct 27127125 TCCAGAAAGAATCCACTCTTCACTTGGT 27127098 Score = 84.2 bits (92), Expect = 3e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | || || | || ||||||||||| ||| | || ||||| | | Sbjct 27083586 TGCAAATTTTTGTGAAGACTCTCACTGGAAAAACAATCACTCTGGAGGTAGAGAGTTCGG 27083527 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| | ||||| || || || ||| ||| || ||||||||||| || || | Sbjct 27083526 ACACGATTGATAATGTGAAGGCCAAGATCCAAGATAAGGAGGGCATTCCACCAGACCAGC 27083467 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || | ||||||||||| || || | || ||| || || | ||||||| || | Sbjct 27083466 AGAGGTTGATTTTTGCAGGCAAGCAGCTTGAAGATGGGAGGACCCTTGCAGATTACAACA 27083407 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATT 146242 | || || ||||| || | ||||| || || Sbjct 27083406 TTCAGAAGGAATCCACATTGCATTTGGTGTT 27083376 >seq1288 Length=1199740 Score = 96.9 bits (106), Expect = 5e-15 Identities = 82/101 (81%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 146127 AAAGAAGGCATTCCACCCGATCAACAAAGACTCATTTTTGCAGGTAAACAATTAGATGAT 146186 || ||||||||||| || ||||| || ||||| |||||||| ||||||||||| || ||| Sbjct 1162946 AAGGAAGGCATTCCTCCGGATCAGCAGAGACTGATTTTTGCTGGTAAACAATTGGAAGAT 1162887 Query 146187 AATAGAACGTTAACAGATTATAATATACAAAAAGAATCGAC 146227 |||||| | |||||||||| || ||||| || ||||| Sbjct 1162886 GGCAGAACGCTTGCAGATTATAACATTCAAAAGGAGTCGAC 1162846 >seq6 Length=23636167 Score = 87.8 bits (96), Expect = 3e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| | || || | || || ||||||||||| | || || || | | Sbjct 4424463 TGCAGATTTTCGTCAAGACTCTTACTGGGAAAACAATTACCCTGGAGGTGGAGAGTTCTG 4424522 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| | ||||| || ||| || || ||| ||||| |||||||| ||||| | Sbjct 4424523 ATACCATTGACAATGTCAAGGCTAAGATTCAGGATAAGGAAGGGATTCCACCTGATCAGC 4424582 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || ||||| ||||| || || || | || ||| | || ||| | |||||||| | Sbjct 4424583 AGAGGCTCATCTTTGCTGGGAAGCAGCTTGAGGATGGCCGTACTTTAGCTGATTATAACA 4424642 Query 146212 TACAAAAAGAATCGACTATCCAT 146234 | ||||| || || || ||||| Sbjct 4424643 TTCAAAAGGAGTCCACCCTCCAT 4424665 Score = 86.0 bits (94), Expect = 1e-11 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| | ||||| |||| || || || || ||| | || || || | | Sbjct 4366274 TGCAGATCTTCGTCAAAACCCTAACTGGGAAGACGATCACTCTCGAGGTGGAGAGTTCAG 4366333 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| | ||||| || || || ||| || || || || ||||| ||||||| Sbjct 4366334 ATACGATTGATAATGTCAAGGCCAAGATCCAAGACAAGGAGGGGATCCCACCAGATCAAC 4366393 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||| | || ||||| || |||||||| || || | ||||| | || ||||||| Sbjct 4366394 AAAGATTGATCTTTGCTGGAAAACAATTGGAAGACGGCCGTACGTTGGCTGACTATAATA 4366453 Query 146212 TACAAAAAGAATCGACT 146228 | || ||||| || ||| Sbjct 4366454 TCCAGAAAGAGTCAACT 4366470 Score = 86.0 bits (94), Expect = 1e-11 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| | ||||| |||| || || || || ||| | || || || | | Sbjct 4416811 TGCAGATCTTCGTCAAAACCCTAACTGGGAAGACGATCACTCTCGAGGTGGAGAGTTCAG 4416870 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| | ||||| || || || ||| || ||||| || ||||| ||||||| Sbjct 4416871 ATACGATTGATAATGTCAAGGCCAAGATCCAAGACAAGGAAGGGATCCCACCAGATCAAC 4416930 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||| | || ||||| || |||||||| || || | ||||| | || ||||| | Sbjct 4416931 AAAGATTGATCTTTGCCGGAAAACAATTGGAAGACGGCCGCACGTTGGCTGACTATAACA 4416990 Query 146212 TACAAAAAGAATCGACT 146228 | || ||||| || ||| Sbjct 4416991 TCCAGAAAGAGTCAACT 4417007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786151620071680