Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20maxima_20[genbank_20GCA_5F002006925.1_202017-03-07] 1,504 sequences; 345,757,338 total letters Query= NC_023588.1 Length=33525 Score E Sequences producing significant alignments: (Bits) Value seq1504 178 3e-40 >seq1504 Length=2444 Score = 178 bits (196), Expect = 3e-40 Identities = 755/1151 (66%), Gaps = 69/1151 (6%) Strand=Plus/Minus Query 15883 CACGGCGTACGC-GTCATCGAAATCAACGGCGGCGTGCGTCCGATCCGCACTGTGGCCAC 15941 |||||||| ||| || | ||| | |||| |||| || | ||| || ||| ||| Sbjct 2377 CACGGCGTGCGCTGTTGTAGAAGTTAACGACGGCACCCGCTCTATCACGACGGTGAGCAC 2318 Query 15942 CGCTATCGTCGGCGTCGTCTGCACCGCGCAGGACGCAGACGCCACGCTGTTCCCCCTCGA 16001 || || || ||| | || ||||||| | || || || ||| | ||||||| ||| | Sbjct 2317 GGCGATTGTGGGCATGGTGTGCACCGGCGATGATGCCGATGCCTCCATGTTCCCGCTCAA 2258 Query 16002 CCGACC-GGTGCTGCTGACCGACGTGCTGGGCGCCGTCGGCAAGGCCGGCACCAGCGGCA 16060 || ||| ||||| ||||| || ||| |||| ||| || || ||| ||| | Sbjct 2257 TAAGCCTGGTACTGCTTACCGATGTACTGACCGCCAGCGGTAAAGCGGGCGAGTCCGGTA 2198 Query 16061 CGCTGCGCGCCACGCTGCAGGCCATTGCCGACCAGGCCAACGCCATT-ACCGTGGTGGTG 16119 ||||| | | | ||| | || || || |||||||| || || | ||||| |||||| Sbjct 2197 CGCTGGCCCGCTCACTGGACGCGATCGCAGACCAGGCAAAAACCCGTCACCGTAGTGGTG 2138 Query 16120 CGCGTCACCGAAGGTTCCGA---CGACAGCGCCA-CCACCGCCAACGTGATCGGCAA--- 16172 ||||| || | || ||| ||| |||| | ||||| | || | |||||| Sbjct 2137 CGCGTTGCCCAGGG---CGAAACCGA-AGCGGAAACCACCTCAAATATTATCGGCGGCGT 2082 Query 16173 GAAGGACGGCGCCACCTTCACCGGCATGCAGGCGCTGCTGGTGGCTGAGGCGCAGGTAGG 16232 || | || || | ||||||||| ||||||| || || || ||||| | || Sbjct 2081 GACTGCCGACGGTAAGAAAACCGGCATGAAGGCGCTACTTTCCGCGCAGTCGCAGCT-GG 2023 Query 16233 CGTGCGTCCGCGCATCCT-CGGCGCACCCGGTCTGGACACCCAGCCGGTTTCGGCCGCAC 16291 |||| |||||||| || ||||| || || | || || ||| | || || ||| Sbjct 2022 CGTGAAACCGCGCATTCTTCGGCGTGCCGGGGCATGATACGCAGGCCGTATC-----CAC 1968 Query 16292 TG-GCGGTCATCG---CCAAGAAGCTGCGCGCGATGGCCTACGTG--AGCTGTGCCGCCA 16345 || || || | || | ||| ||||| || | || || || |||| || | Sbjct 1967 TGAGCTGTGAGCGTGGCGCAGAGCCTGCGGGCCTTTGCGTATATGTCAGCTTA--CGGCT 1910 Query 16346 GTGCCTCGGTCAGCGAG-GCCATCGCCTATCGCGAGCAGTTCAGCCAGCGCGAGCTGATG 16404 || | || || || || ||| | || ||||| | ||||||||||| || ||| Sbjct 1909 GTAAAACCGTG-GCAAGAGCGATCACTTACCGCGACAACTTCAGCCAGCGTGAAGGAATG 1851 Query 16405 CTGATCTATCCCGACTTCGTCGCGTTCAACAC--TGCCGACGCCACCACCAGCATGGCGT 16462 | |||| || |||||| | || |||| ||| | | | | ||| || Sbjct 1850 ATTATCTGGCCTGACTTCATAAACTTTGACACGGTGCTGCAGGC-------GGATG-CGA 1799 Query 16463 TCGCGAC----CGCCCGCGCCCTGGGCCTGCGCGCGATGA-TCGATGAGCAGCAGGGCTG 16517 ||| || |||||||||||| ||| ||||||| | | |||| ||||| ||||| Sbjct 1798 CCGCTACGCTACGCCCGCGCCCTTGGC-TGCGCGCTAAAAATCGACGAGCAAACCGGCTG 1740 Query 16518 GCACAAATCGATCTCCAATGTGGCCGTCGCCGGCGTGACCGGCATCAGCCGCG-ACGTGC 16576 ||||||| | | || || ||||| ||| |||||| |||||| | | ||| | ||| Sbjct 1739 GCACAAAACCCTGTCTAACGTGGC-GTCAACGGCGTAACCGGCTTGT-CTGCGGATGTGT 1682 Query 16577 ACTGGGACCTGCAAGATCCGGCGACCGACGCTGGCCTGCTGAACGCCGCCGACATCACCA 16636 |||||| ||||| || ||||| || || || || ||||||||| |||| |||||| Sbjct 1681 TCTGGGATCTGCAGGACCCGGCAACTGATGCCGGACTGCTGAACCAGAACGACGTCACCA 1622 Query 16637 CCCTCATCAACTCCAACGGTTACAAGTTCTGGGGTTCGCG-GACCTGCAGCGACG-ACCC 16694 || | |||| | |||| | ||||||||||| || |||| || || | | || Sbjct 1621 CCTTGATCAGGAAGGATGGTTTCCGCTTCTGGGGTTCCCGCTGCCTG-AGTGATGAATCC 1563 Query 16695 GCTGTTCGCCTTCGAGACGGCCACGCGCACCGCGCAGATCCTGGCCGACACCATTGCCGA 16754 ||||||| || || | ||| |||||||||||| | ||||| |||||||| || || Sbjct 1562 GCTGTTCCAGTTTGAAAACTACACCCGCACCGCGCAGGTACTGGCTGACACCATGGCAGA 1503 Query 16755 GGCGCAGATGGTGTACATCGACAAGCCCGAGCATCCGTCGCTCATCCGCGACATGCTGGA 16814 || || ||| | | || | ||| | |||||||| |||||| || | || Sbjct 1502 GGGCCATATGTGGGCGGTGGATATGCCGCTTAACCCGTCGCTGGCCCGCGATATTATCGA 1443 Query 16815 GAGCATCAATGCCAAGTTCCGCGAGCTGGTGAACGCCGGCTACGT----GGCTGGTGCAT 16870 | ||| ||||| | ||| ||||| || |||||| | ||| |||| || Sbjct 1442 AGGTATCCGCGCCAAAATGCGCAGCCTGGT-AATCAGGGCTACCTCATCGGC-GGTG-AT 1386 Query 16871 CGCTGTA-CGACGAGCG-GCCAACGAGCCCAGCCAG--CTG-AGGCTGGG---GTGACAA 16922 |||| | || || | | ||||| | || ||| ||| | || ||| | | Sbjct 1385 TGCTGGATTGATGACAGCGTTAACGA-CAAAGACAGCCCTGAAAGCCGGGAAACTCTGGA 1327 Query 16923 TCGACTACGACTACACGCCGGTACGCCCGCTGGAGAACCTGGTCCTGAACCAGCGCATCA 16982 ||||||||||||| ||||| || | |||||||| |||||| | ||| ||||||||||| Sbjct 1326 TCGACTACGACTATACGCCAGTGCCGCCGCTGGAAAACCTGATGCTGCGCCAGCGCATCA 1267 Query 16983 CCGACCGCTAC 16993 | ||||| ||| Sbjct 1266 CTGACCGTTAC 1256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 107156486150976