Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20maxima_20[genbank_20GCA_5F002006925.1_202017-03-07]
1,504 sequences; 345,757,338 total letters
Query= NC_023588.1
Length=33525
Score E
Sequences producing significant alignments: (Bits) Value
seq1504 178 3e-40
>seq1504
Length=2444
Score = 178 bits (196), Expect = 3e-40
Identities = 755/1151 (66%), Gaps = 69/1151 (6%)
Strand=Plus/Minus
Query 15883 CACGGCGTACGC-GTCATCGAAATCAACGGCGGCGTGCGTCCGATCCGCACTGTGGCCAC 15941
|||||||| ||| || | ||| | |||| |||| || | ||| || ||| |||
Sbjct 2377 CACGGCGTGCGCTGTTGTAGAAGTTAACGACGGCACCCGCTCTATCACGACGGTGAGCAC 2318
Query 15942 CGCTATCGTCGGCGTCGTCTGCACCGCGCAGGACGCAGACGCCACGCTGTTCCCCCTCGA 16001
|| || || ||| | || ||||||| | || || || ||| | ||||||| ||| |
Sbjct 2317 GGCGATTGTGGGCATGGTGTGCACCGGCGATGATGCCGATGCCTCCATGTTCCCGCTCAA 2258
Query 16002 CCGACC-GGTGCTGCTGACCGACGTGCTGGGCGCCGTCGGCAAGGCCGGCACCAGCGGCA 16060
|| ||| ||||| ||||| || ||| |||| ||| || || ||| ||| |
Sbjct 2257 TAAGCCTGGTACTGCTTACCGATGTACTGACCGCCAGCGGTAAAGCGGGCGAGTCCGGTA 2198
Query 16061 CGCTGCGCGCCACGCTGCAGGCCATTGCCGACCAGGCCAACGCCATT-ACCGTGGTGGTG 16119
||||| | | | ||| | || || || |||||||| || || | ||||| ||||||
Sbjct 2197 CGCTGGCCCGCTCACTGGACGCGATCGCAGACCAGGCAAAAACCCGTCACCGTAGTGGTG 2138
Query 16120 CGCGTCACCGAAGGTTCCGA---CGACAGCGCCA-CCACCGCCAACGTGATCGGCAA--- 16172
||||| || | || ||| ||| |||| | ||||| | || | ||||||
Sbjct 2137 CGCGTTGCCCAGGG---CGAAACCGA-AGCGGAAACCACCTCAAATATTATCGGCGGCGT 2082
Query 16173 GAAGGACGGCGCCACCTTCACCGGCATGCAGGCGCTGCTGGTGGCTGAGGCGCAGGTAGG 16232
|| | || || | ||||||||| ||||||| || || || ||||| | ||
Sbjct 2081 GACTGCCGACGGTAAGAAAACCGGCATGAAGGCGCTACTTTCCGCGCAGTCGCAGCT-GG 2023
Query 16233 CGTGCGTCCGCGCATCCT-CGGCGCACCCGGTCTGGACACCCAGCCGGTTTCGGCCGCAC 16291
|||| |||||||| || ||||| || || | || || ||| | || || |||
Sbjct 2022 CGTGAAACCGCGCATTCTTCGGCGTGCCGGGGCATGATACGCAGGCCGTATC-----CAC 1968
Query 16292 TG-GCGGTCATCG---CCAAGAAGCTGCGCGCGATGGCCTACGTG--AGCTGTGCCGCCA 16345
|| || || | || | ||| ||||| || | || || || |||| || |
Sbjct 1967 TGAGCTGTGAGCGTGGCGCAGAGCCTGCGGGCCTTTGCGTATATGTCAGCTTA--CGGCT 1910
Query 16346 GTGCCTCGGTCAGCGAG-GCCATCGCCTATCGCGAGCAGTTCAGCCAGCGCGAGCTGATG 16404
|| | || || || || ||| | || ||||| | ||||||||||| || |||
Sbjct 1909 GTAAAACCGTG-GCAAGAGCGATCACTTACCGCGACAACTTCAGCCAGCGTGAAGGAATG 1851
Query 16405 CTGATCTATCCCGACTTCGTCGCGTTCAACAC--TGCCGACGCCACCACCAGCATGGCGT 16462
| |||| || |||||| | || |||| ||| | | | | ||| ||
Sbjct 1850 ATTATCTGGCCTGACTTCATAAACTTTGACACGGTGCTGCAGGC-------GGATG-CGA 1799
Query 16463 TCGCGAC----CGCCCGCGCCCTGGGCCTGCGCGCGATGA-TCGATGAGCAGCAGGGCTG 16517
||| || |||||||||||| ||| ||||||| | | |||| ||||| |||||
Sbjct 1798 CCGCTACGCTACGCCCGCGCCCTTGGC-TGCGCGCTAAAAATCGACGAGCAAACCGGCTG 1740
Query 16518 GCACAAATCGATCTCCAATGTGGCCGTCGCCGGCGTGACCGGCATCAGCCGCG-ACGTGC 16576
||||||| | | || || ||||| ||| |||||| |||||| | | ||| | |||
Sbjct 1739 GCACAAAACCCTGTCTAACGTGGC-GTCAACGGCGTAACCGGCTTGT-CTGCGGATGTGT 1682
Query 16577 ACTGGGACCTGCAAGATCCGGCGACCGACGCTGGCCTGCTGAACGCCGCCGACATCACCA 16636
|||||| ||||| || ||||| || || || || ||||||||| |||| ||||||
Sbjct 1681 TCTGGGATCTGCAGGACCCGGCAACTGATGCCGGACTGCTGAACCAGAACGACGTCACCA 1622
Query 16637 CCCTCATCAACTCCAACGGTTACAAGTTCTGGGGTTCGCG-GACCTGCAGCGACG-ACCC 16694
|| | |||| | |||| | ||||||||||| || |||| || || | | ||
Sbjct 1621 CCTTGATCAGGAAGGATGGTTTCCGCTTCTGGGGTTCCCGCTGCCTG-AGTGATGAATCC 1563
Query 16695 GCTGTTCGCCTTCGAGACGGCCACGCGCACCGCGCAGATCCTGGCCGACACCATTGCCGA 16754
||||||| || || | ||| |||||||||||| | ||||| |||||||| || ||
Sbjct 1562 GCTGTTCCAGTTTGAAAACTACACCCGCACCGCGCAGGTACTGGCTGACACCATGGCAGA 1503
Query 16755 GGCGCAGATGGTGTACATCGACAAGCCCGAGCATCCGTCGCTCATCCGCGACATGCTGGA 16814
|| || ||| | | || | ||| | |||||||| |||||| || | ||
Sbjct 1502 GGGCCATATGTGGGCGGTGGATATGCCGCTTAACCCGTCGCTGGCCCGCGATATTATCGA 1443
Query 16815 GAGCATCAATGCCAAGTTCCGCGAGCTGGTGAACGCCGGCTACGT----GGCTGGTGCAT 16870
| ||| ||||| | ||| ||||| || |||||| | ||| |||| ||
Sbjct 1442 AGGTATCCGCGCCAAAATGCGCAGCCTGGT-AATCAGGGCTACCTCATCGGC-GGTG-AT 1386
Query 16871 CGCTGTA-CGACGAGCG-GCCAACGAGCCCAGCCAG--CTG-AGGCTGGG---GTGACAA 16922
|||| | || || | | ||||| | || ||| ||| | || ||| | |
Sbjct 1385 TGCTGGATTGATGACAGCGTTAACGA-CAAAGACAGCCCTGAAAGCCGGGAAACTCTGGA 1327
Query 16923 TCGACTACGACTACACGCCGGTACGCCCGCTGGAGAACCTGGTCCTGAACCAGCGCATCA 16982
||||||||||||| ||||| || | |||||||| |||||| | ||| |||||||||||
Sbjct 1326 TCGACTACGACTATACGCCAGTGCCGCCGCTGGAAAACCTGATGCTGCGCCAGCGCATCA 1267
Query 16983 CCGACCGCTAC 16993
| ||||| |||
Sbjct 1266 CTGACCGTTAC 1256
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 107156486150976
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |