Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20maxima_20[genbank_20GCA_5F002006925.1_202017-03-07] 1,504 sequences; 345,757,338 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq6 111 2e-19 seq2 87.8 2e-12 >seq6 Length=23636167 Score = 111 bits (122), Expect = 2e-19 Identities = 165/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 |||||| || | ||| | || | ||||| || ||||| ||||| || ||||||||| Sbjct 5506611 GCCTCCACGGAGACGAAGCACAAGATGAAGCGTCGATTCCTTTTGGATATTGTAATCGGC 5506552 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 || |||| |||||||| ||||| ||||| |||||||||| ||||| || ||||| Sbjct 5506551 CAAGGTGCGGCCATCTTCGAGCTGTTTTCCAGCGAAGATCAGACGCTGCTGGTCCGGAGG 5506492 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 || ||||| ||||| || || || | | || | ||||| | | || || Sbjct 5506491 GATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCGAC 5506432 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCTTA 137417 ||| | ||| | ||||||||||| | ||||| ||||| || ||||| | ||| Sbjct 5506431 TTCGAGAGTAATGGTCTTGCCGGTTAGGGTTTTCACGAAGATCTGCATCGTTTA 5506378 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274 || || || || || |||||||||||| || |||| ||||||||||| || || Sbjct 4416550 GTTGACTCCTTCTGGATGTTGTAATCGGCCAAGGTGCGGCCATCTTCGAGTTGCTTTCCG 4416491 Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 137334 ||| |||||||||| |||||||| ||||| || || || ||||| || || || Sbjct 4416490 GCAAAGATCAGACGCTGCTGATCCGGAGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTC 4416431 Query 137335 AGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 137394 | | || | ||||| | | || ||||| | ||| | ||| |||||||| | ||| Sbjct 4416430 ACGTTGTCGATGGTGTCAGAGCTCTCCACTTCGAGAGTGATCGTTTTGCCGGTTAGGGTT 4416371 Query 137395 TTTACGAATATTTGCATA 137412 || ||||| || |||||| Sbjct 4416370 TTCACGAAGATCTGCATA 4416353 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 137196 ACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGA 137255 |||||| || | ||||| || || || || || ||||||||||| | || || Sbjct 4424449 ACGCAACACCAGATGAAGAGTCGACTCCTTCTGAATGTTGTAATCCGCAAGCGTCCTTCC 4424390 Query 137256 GTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 137315 || || || || || |||||| ||||||| || |||||||| || ||||| ||||| || Sbjct 4424389 ATCCTCCAGCTGCTTCCCAGCAAAGATCAGGCGCTGCTGATCAGGTGGTATCCCTTCCTT 4424330 Query 137316 GTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCAC 137375 ||| |||||| || | | || | ||||| | | || ||||| | ||| | Sbjct 4424329 GTCCTGGATTTTTGCCTTGACGTTGTCAATGGTGTCAGAGCTCTCGACTTCCAGAGTGAT 4424270 Query 137376 CGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||||| || |||| ||||| ||||| || ||||| Sbjct 4424269 CGTCTTTCCCGTCAGGGTTTTGACGAAGATCTGCAT 4424234 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274 || ||||||||||| |||||||||||| || || | |||||||||||| || || Sbjct 4416778 GTGGATTCTTTTTGGATGTTGTAATCGGCCAAGGTCCGGCCGTCTTCGAGTTGCTTTCCG 4416719 Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 137334 || ||||||| | ||||| |||||||| || || || ||||| || || || Sbjct 4416718 GCGAAGATCAGCCTCTGCTGGTCGGGAGGGATTCCCTCCTTGTCTTGGATCTTGGCCTTC 4416659 Query 137335 AGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 137394 | | || | |||||| | | || || || | || | |||||| ||||||| ||| Sbjct 4416658 ACGTTATCGATCGTGTCGGAGCTCTCGACCTCGAGGGTAATCGTCTTCCCGGTCAGGGTT 4416599 Query 137395 TTTACGAATATTTGCAT 137411 || ||||| || ||||| Sbjct 4416598 TTGACGAAGATCTGCAT 4416582 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274 || ||||||||||| |||||||||||| || |||| |||||||||||| || || Sbjct 4424202 GTGGATTCTTTTTGAATGTTGTAATCGGCCAAAGTGCGGCCGTCTTCGAGTTGCTTCCCG 4424143 Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 137334 ||| |||| ||||| ||||| || || || || || || ||||| || || || Sbjct 4424142 GCAAAGATGAGACGCTGCTGGTCCGGCGGAATTCCCTCCTTGTCCTGGATCTTGGCCTTG 4424083 Query 137335 AGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 137394 | | || | ||||| | | || ||||| | || | ||||||||||| | ||| Sbjct 4424082 ACGTTGTCGATTGTGTCGGAGCTCTCCACTTCGAGGGTGATTGTCTTGCCGGTGAGGGTT 4424023 Query 137395 TTTACGAATATTTGCAT 137411 || || ||||| ||||| Sbjct 4424022 TTCACAAATATCTGCAT 4424006 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 |||||| || | ||| | || | ||||| || || || || || |||||||||||| Sbjct 4325956 GCCTCCGCGGAGACGAAGGACAAGATGAAGGGTTGACTCCTTCTGGATGTTGTAATCGGC 4325897 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 || |||| ||| ||||| || || |||||| |||| || | ||||| || || || Sbjct 4325896 CAAGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCAAAGATAAGCCTCTGCTGGTCCGGCGG 4325837 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 || || || ||||| || || |||| | || | ||||| | | || || Sbjct 4325836 AATTCCCTCCTTGTCTTGGATCTTGGCCTTTACGTTGTCGATGGTGTCCGAGCTCTCGAC 4325777 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 ||| | ||| | || ||||||||||| ||||| ||||| || |||||| Sbjct 4325776 TTCGAGAGTAATAGTTTTGCCGGTCAAGGTTTTCACGAAGATCTGCATA 4325728 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274 || || || || || |||||||||||| || |||| ||||||||||| || || Sbjct 4366013 GTTGACTCCTTCTGGATGTTGTAATCGGCCAAGGTGCGGCCATCTTCGAGTTGCTTTCCG 4365954 Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 137334 || |||||||||| |||||||| ||||| || || || ||||| || || || Sbjct 4365953 GCGAAGATCAGACGCTGCTGATCCGGAGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTG 4365894 Query 137335 AGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 137394 | | || | ||||| | | || ||||| | ||| | ||| |||||||| | ||| Sbjct 4365893 ACGTTGTCGATTGTGTCAGAGCTCTCCACTTCGAGAGTGATCGTTTTGCCGGTTAGGGTT 4365834 Query 137395 TTTACGAATATTTGCATA 137412 || ||||| || |||||| Sbjct 4365833 TTCACGAAGATCTGCATA 4365816 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274 || ||||||||||| |||||||||||| || |||| |||||| | ||| || || Sbjct 4366241 GTGGATTCTTTTTGGATGTTGTAATCGGCCAAGGTGCGGCCGTCTTCCAATTGCTTTCCG 4366182 Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 137334 || ||||||| | ||||| |||||||| || || || ||||| || || || Sbjct 4366181 GCGAAGATCAGCCTCTGCTGGTCGGGAGGGATTCCCTCCTTGTCTTGGATCTTGGCCTTC 4366122 Query 137335 AGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 137394 | | || | |||||| | | || || || | || | |||||| ||||| | ||| Sbjct 4366121 ACGTTATCGATCGTGTCGGAGCTCTCGACCTCGAGGGTAATCGTCTTCCCGGTTAGGGTT 4366062 Query 137395 TTTACGAATATTTGCAT 137411 || ||||| || ||||| Sbjct 4366061 TTGACGAAGATCTGCAT 4366045 Score = 82.4 bits (90), Expect = 7e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 |||||| || | ||| | || | ||| | || || || || ||||||||||||||| Sbjct 4326184 GCCTCCGCGGAGACGAAGGACAAGATGGAGGGTTGACTCCTTCTGTATGTTGTAATCGGC 4326125 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 || |||| ||| ||||| || || ||||| |||| || | ||||| || || || Sbjct 4326124 CAAGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATAAGCCTCTGCTGGTCCGGGGG 4326065 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 ||| || || ||||| ||| || || | | || | ||||| | | || || Sbjct 4326064 TATTCCCTCCTTGTCTTGAATCTTCGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCGAC 4326005 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 ||| | ||| | || ||||| |||| ||||| ||||| || ||||| Sbjct 4326004 TTCGAGAGTAATAGTTTTGCCAGTCAGGGTTTTCACGAAGATCTGCAT 4325957 >seq2 Length=53008150 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 137203 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGTCTTC 137261 || ||||||| || ||||| || || |||||||| || | ||||| || | || || Sbjct 27084291 ACCAAATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCTGCAAGTGTGCGTCCA-TCCTC 27084349 Query 137262 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 137321 ||||||||||| ||| |||| || | |||||| || || || || ||||| ||||| Sbjct 27084350 TAGTTGTTTACCGGCAAAGATGAGCCTTTGCTGGTCTGGTGGGATCCCTTCCTTGTCCTG 27084409 Query 137322 AATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTT 137381 |||||| ||| | | || | ||||| | | || ||||| | || | || || Sbjct 27084410 AATTTTGGCTTTGACATTGTCAATGGTGTCGGAGCTCTCAACTTCCAAGGTGATAGTTTT 27084469 Query 137382 GCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || |||| ||||| || ||||| ||||| Sbjct 27084470 ACCAGTCAGGGTTTTCACAAATATCTGCAT 27084499 Score = 86.0 bits (94), Expect = 6e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 137203 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGTCTTC 137261 || ||||||| || ||||| || || |||||||| || | ||||| || | || || Sbjct 27127554 ACCAAATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCTGCAAGTGTGCGTCCA-TCCTC 27127612 Query 137262 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 137321 ||||||||||| ||| |||| || | |||||| || || || || ||||| || || Sbjct 27127613 TAGTTGTTTACCGGCAAAGATGAGCCTTTGCTGGTCTGGTGGGATCCCTTCCTTATCCTG 27127672 Query 137322 AATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTT 137381 |||||| ||| | | || | ||||| | | ||| || || | || | ||||| Sbjct 27127673 AATTTTGGCTTTGACATTGTCAATGGTGTCGGAGCTTTCCACCTCCAGGGTGATAGTCTT 27127732 Query 137382 GCCGGTCAATGTTTTTACGAATATTTGCATA 137412 || || | |||||||| || || |||||| Sbjct 27127733 TCCAGTGAGGGTTTTTACAAAGATCTGCATA 27127763 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 137257 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 137316 || ||||| |||||||||||| |||| || | |||||||| || || || ||||| ||| Sbjct 27128064 TCCTCGAGCTGTTTACCAGCAAAGATAAGCCTCTGCTGATCTGGTGGGATCCCTTCCTTG 27128123 Query 137317 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACC 137376 || || || ||||| | || | ||||| | | ||| || |||| || | Sbjct 27128124 TCCTGGATCTTGGCTTTTACATTATCAATGGTGTCGGAGCTTTCAACCTCAAGGGTTATT 27128183 Query 137377 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 ||||||||||| | ||||| || || |||||||| Sbjct 27128184 GTCTTGCCGGTGAGAGTTTTCACAAAGATTTGCAT 27128218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488534815372800