Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20maxima_20[genbank_20GCA_5F002006925.1_202017-03-07] 1,504 sequences; 345,757,338 total letters Query= NC_025115.1 Length=40002 Score E Sequences producing significant alignments: (Bits) Value seq1504 385 1e-102 >seq1504 Length=2444 Score = 385 bits (426), Expect = 1e-102 Identities = 747/1068 (70%), Gaps = 35/1068 (3%) Strand=Plus/Minus Query 24441 CGATGATGCCGACGCGGCCACCTTCCCGCTCGACACCCCCG-TCCTGCTGACCAACCCGC 24499 |||||||||||| || ||| ||||||||| | | || | | ||||| ||| | | Sbjct 2290 CGATGATGCCGATGCCTCCATGTTCCCGCTCAATAAGCCTGGTACTGCTTACCGATGTAC 2231 Query 24500 AGGCCTACATCGGCAAGGCCGGCAACAAAGGCACGCTCGCCCGCACGCTCGATGCCATCA 24559 | || || ||| || || ||| | || ||||| |||||| | || || || ||| Sbjct 2230 TGACCGCCAGCGGTAAAGCGGGCGAGTCCGGTACGCTGGCCCGCTCACTGGACGCGATCG 2171 Query 24560 CCGACCAGACCAA--CCCGCTCACGGTCGTGGTGCGCGTCGCCGGCGGTGCTTCCGAGGC 24617 | |||||| | || |||| |||| || ||||||||||| ||| || | |||| || Sbjct 2170 CAGACCAGGCAAAAACCCG-TCACCGTAGTGGTGCGCGTTGCCCAGGGCGAAACCGAAGC 2112 Query 24618 CGAGACCACGTCCAACCTGATCGGCGCCACCAACGCGGCCGGCCGGTACACCGGCATGAA 24677 || ||||| || || | ||||||| | | || | ||| | | ||||||||||| Sbjct 2111 GGAAACCACCTCAAATATTATCGGCGGCGTGACTGCCGACGGTAAGAAAACCGGCATGAA 2052 Query 24678 GGCGTTGCTGGCCGCCCGCAACCG-TTTTGGCGTCGCGCCGCGCATCCT--GGCTGTGCC 24734 |||| | || ||| |||| || |||||| |||||||| || ||| ||||| Sbjct 2051 GGCGCTACTTTCCG--CGCAGTCGCAGCTGGCGTGAAACCGCGCATTCTTCGGC-GTGCC 1995 Query 24735 GGGGCTCGACAGCCTGCCAGTCGGGACCGAGCTGGTCACCATCGCGCAGAAGCTGCGCGC 24794 ||||| || | | | | || || ||||| || | | | ||||||| ||||| || Sbjct 1994 GGGGCATGATACGCAGGCCGTATCCACTGAGCT-GTGAGCGTGGCGCAGAGCCTGCGGGC 1936 Query 24795 CTTCGCCTACCTGTCGGCGTACGGCTGCCAGACTAAGG-AAGAGGCCGTCGCCTATCGCA 24853 ||| || || |||| || |||||||| | || || |||| || || | || ||| Sbjct 1935 CTTTGCGTATATGTCAGCTTACGGCTGTAAAACCGTGGCAAGA-GCGATCACTTACCGCG 1877 Query 24854 GTAACTTCGGCCAGCGCGAAGCGATGGTGATGTGGCCGGATTTCGTCGGCTGGGACAC-- 24911 |||||| ||||||| |||| ||| | || ||||| || ||| | || ||||| Sbjct 1876 ACAACTTCAGCCAGCGTGAAGGAATGATTATCTGGCCTGACTTCATAAACTTTGACACGG 1817 Query 24912 CGCCGCCAACGCCGAGACCACGCTGTGGGCCACGGCCCGCGCGGTTGGCTTGCGCGC-CA 24970 || || | || || | || | | || || |||||||| ||||| ||||||| | Sbjct 1816 TGCTGC--AGGCGGATGCGAC-CGCTACGCTAC-GCCCGCGCCCTTGGC-TGCGCGCTAA 1762 Query 24971 AGATCGACAACGACACCGGCTGGCACAAGACGCTTTCCAACGTGGCTGTGGGTGGCGTGA 25030 | |||||| | | |||||||||||||| || || || |||||||| || ||||| | Sbjct 1761 AAATCGACGAGCAAACCGGCTGGCACAAAACCCTGTCTAACGTGGC-GTCAACGGCGTAA 1703 Query 25031 CTGGCCTGTC-GCGCGACGTTTTCTGGGACCTCCAGGACCCGGCGACCGACGCGGGCTAC 25089 | ||| |||| ||| || || |||||||| || ||||||||||| || || || || Sbjct 1702 CCGGCTTGTCTGCG-GATGTGTTCTGGGATCTGCAGGACCCGGCAACTGATGCCGGACTG 1644 Query 25090 CTGAACGCCAACGAGGTGACCACGCTGGTTCA-CCGCGACGGCTACCGCTTCTGGGGCTC 25148 |||||| ||||| || ||||| || | ||| || || | |||||||||||| || Sbjct 1643 CTGAACCAGAACGACGTCACCAC-CTTGATCAGGAAGGATGGTTTCCGCTTCTGGGGTTC 1585 Query 25149 GCGC-ACGTGCAGCG-CGGATCCGCTGTTCGCCTTCGAGAACTACACCCGCACCGCCCAG 25206 ||| | || || | | ||||||||||| || || ||||||||||||||||| ||| Sbjct 1584 CCGCTGCCTG-AGTGATGAATCCGCTGTTCCAGTTTGAAAACTACACCCGCACCGCGCAG 1526 Query 25207 GTGCTGGCCGACACCATGGCGGAAGCCCACATGTGGGCAAACGATCTGCCGATGACGCCG 25266 || ||||| ||||||||||| || | ||| |||||||| ||| ||||| | | ||| Sbjct 1525 GTACTGGCTGACACCATGGCAGAGGGCCATATGTGGGCGGTGGATATGCCGCTTAACCCG 1466 Query 25267 ACGCTGGTCCGCGATCTGCTGGAGGGCATCAACGCCAAGCTGCGCATGCTGACCCGCAAC 25326 |||||| ||||||| | | || || ||| |||||| |||||| ||| | | Sbjct 1465 TCGCTGGCCCGCGATATTATCGAAGGTATCCGCGCCAAAATGCGCAGCCTGGTAATC-AG 1407 Query 25327 GGCTACCTGCTGGGCGGCGCCGCGTGGTTCGACCCGGAAGC--CAACACCAAGGACA-CG 25383 |||||||| | ||||| | ||| | || | ||| ||| ||| |||| | Sbjct 1406 GGCTACCTCATCGGCGGTGATTGCTGGATTGA--TGACAGCGTTAACGACAAAGACAGCC 1349 Query 25384 CTGAAGGCCGGCCAGCTCGCCATCGACTACGACTACACGCCCGTCCCGCCGCTGGAAGAC 25443 ||||| ||||| | ||| |||||||||||||| ||||| || |||||||||||| || Sbjct 1348 CTGAAAGCCGGGAAACTCTGGATCGACTACGACTATACGCCAGTGCCGCCGCTGGAAAAC 1289 Query 25444 CTCACGTTCCGCCAGCGCATCACCGACCGCTACCTGATGCAGTTCGCC 25491 || | | | |||||||||||||| ||||| |||||| || | ||| || Sbjct 1288 CTGATGCTGCGCCAGCGCATCACTGACCGTTACCTGGTGGATTTCACC 1241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127882515977472