Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20maxima_20[genbank_20GCA_5F002006925.1_202017-03-07] 1,504 sequences; 345,757,338 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq2 109 4e-19 seq6 96.9 2e-15 >seq2 Length=53008150 Score = 109 bits (120), Expect = 4e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||| | ||| | |||| || || ||| ||| || || ||||| || |||| Sbjct 27084501 CCACCTCTTAGACGGAGGACCAGGTGGAGTGTGGACTCCTTCTGAATGTTATAGTCGGCA 27084560 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || || | |||||| || |||||||| | | ||||| ||| | || Sbjct 27084561 AGGGTGCGGCCATCCTCAAGTTGTTTGCCAGCAAAAATAAGCCTTTGCTGGTCTGGTGGG 27084620 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCAC 33701 | ||||| ||||| |||||| ||| | ||| |||| ||||||| |||||| Sbjct 27084621 ATCCCTTCCTTGTCCTGAATTTTGGCTTTGA-CATTGTCAATGGTGTCGGAGCTTTCCAC 27084679 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 |||| ||||| || || || || | || |||||||||||||||||| Sbjct 27084680 CTCAAGGGTGATAGTCTTTCCAGTGAGGGTCTTTACAAAGATCTGCATA 27084728 Score = 109 bits (120), Expect = 4e-19 Identities = 171/241 (71%), Gaps = 4/241 (2%) Strand=Plus/Plus Query 33513 AAAATCGTCA--CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATG 33570 |||||| || ||||| || | ||| | |||||||| || || || || || ||| Sbjct 27127524 AAAATCTGCATGCCACCCCTGAGACGGAGGACCAAATGAAGGGTTGATTCCTTCTGGATG 27127583 Query 33571 TTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGC 33630 ||||| || | ||||||||| | || || | |||||| |||||||| || | | ||| Sbjct 27127584 TTGTAGTCTGCAAGTGTGCGTCCATCCTCTAGTTGTTTACCGGCAAAGATGAGCCTTTGC 27127643 Query 33631 TGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTC 33689 || ||| | || | ||||| || || |||||| ||| | ||| |||| |||||| Sbjct 27127644 TGGTCTGGTGGGATCCCTTCCTTATCCTGAATTTTGGCTTTGA-CATTGTCAATGGTGTC 27127702 Query 33690 GCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | |||||| || | ||||| || || || || | |||||||||||||||||||| Sbjct 27127703 GGAGCTTTCCACCTCCAGGGTGATAGTCTTTCCAGTGAGGGTTTTTACAAAGATCTGCAT 27127762 Query 33750 A 33750 | Sbjct 27127763 A 27127763 Score = 105 bits (116), Expect = 4e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | ||||| || || || ||| || || ||||| ||||| | Sbjct 27127763 ACCACCACGGAGACGGAGGACCAAGTGGAGGGTTGACTCCTTCTGGATGTTATAATCAGC 27127822 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 |||||||| | || || | ||||| |||||||| || | | |||||| ||| | || Sbjct 27127823 AAGTGTGCGACCATCCTCGAGCTGTTTACCGGCAAAGATAAGCCTCTGCTGGTCTGGTGG 27127882 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCA 33700 | ||||| ||||| ||| || ||||| ||| |||| ||||||| ||||| Sbjct 27127883 GATCCCTTCCTTGTCCTGAATCTTGGCTTTCA-CATTGTCAATGGTGTCGGAGCTTTCCA 27127941 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | |||| || ||||| || || || | || |||||||||||||||||| Sbjct 27127942 CCTCAAGAGTAATCGTCTTGCCAGTGAGGGTCTTTACAAAGATCTGCATA 27127991 Score = 98.7 bits (108), Expect = 7e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 ||||| || |||||| ||||| || ||||| || || | || || | | | || || Sbjct 27127098 ACCAAGTGAAGAGTGGATTCTTTCTGGATGTTATAGTCTGCAAGAGTCCTTCCATCTTCA 27127157 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | || ||||| |||||||| | | |||||||||| | || | ||| || ||||| | Sbjct 27127158 AGCTGCTTTCCAGCAAAAATGAGCCTCTGCTGATCTGGTGGGATACCCTCCTTGTCTTGA 27127217 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 ||||| ||||| | | ||| | |||||| ||| || |||| || || ||||| Sbjct 27127218 ATTTTTGCTTTCA-CGTTGTCGATGGTGTCAGAACTTTCAACCTCAAGAGTAATTGTTTT 27127276 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || || | |||||| ||||||||||||||| Sbjct 27127277 TCCGGTGAGCGTTTTCACAAAGATCTGCATA 27127307 Score = 93.3 bits (102), Expect = 3e-14 Identities = 162/232 (70%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| || | ||| | |||||||| || || || || || |||||||| || | Sbjct 27087897 ACCACCCCTGAGACGAAGTACCAAATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCTGC 27087956 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||||||||| | || || | |||||| || ||||| || | | ||||| ||| | || Sbjct 27087957 AAGTGTGCGTCCATCCTCAAGTTGTTTGCCAGCAAAGATGAGCCTTTGCTGGTCTGGTGG 27088016 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTC---GCTTGATT 33697 | ||||| || || |||||| ||| | ||| |||| |||||| |||| | Sbjct 27088017 GATCCCTTCCTTATCCTGAATTTTGGCTTTGA-CATTGTCAATGGTGTCCGAGCTT---T 27088072 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| |||| || || || || || || | || ||||||||||| ||||| Sbjct 27088073 CCACCTCAAGGGTAATGGTCTTTCCAGTGAGGGTCTTTACAAAGATTTGCAT 27088124 >seq6 Length=23636167 Score = 96.9 bits (106), Expect = 2e-15 Identities = 142/197 (72%), Gaps = 8/197 (4%) Strand=Plus/Minus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 ||| || || ||||||||||||| | ||||| | || || | ||| ||||||||||| Sbjct 4416545 CTCCTTCTGGATGTTGTAATCGGCCAAGGTGCGGCCATCTTCGAGTTGCTTTCCGGCAAA 4416486 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 |||| |||||||||||| | || | || || ||||| || || ||| || | Sbjct 4416485 GATCAGACGCTGCTGATCCGGAGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTC-ACGT 4416427 Query 33678 AGTC-ACGGTGTC---GCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTT 33733 ||| | |||||| ||| ||||| || | ||||||||||| || |||| |||| Sbjct 4416426 TGTCGATGGTGTCAGAGCT---CTCCACTTCGAGAGTGATCGTTTTGCCGGTTAGGGTTT 4416370 Query 33734 TTACAAAGATCTGCATA 33750 | || |||||||||||| Sbjct 4416369 TCACGAAGATCTGCATA 4416353 Score = 96.9 bits (106), Expect = 2e-15 Identities = 163/232 (70%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| || |||| ||| ||||||| ||| ||||| ||| || || ||||||||||| | Sbjct 4424461 ACCGCCCCTCAGACGCAACACCAGATGAAGAGTCGACTCCTTCTGAATGTTGTAATCCGC 4424402 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || | | | || |||| || || || ||||| |||| ||||||||||| | || Sbjct 4424401 AAGCGTCCTTCCATCCTCCAGCTGCTTCCCAGCAAAGATCAGGCGCTGCTGATCAGGTGG 4424342 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATT 33697 | ||||| ||||| ||||| || | || | ||| | |||||| ||| | Sbjct 4424341 TATCCCTTCCTTGTCCTGGATTTT-TGCCTTGACGTTGTCAATGGTGTCAGAGCT---CT 4424286 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || | |||||||| || || || | ||||| || ||||||||||| Sbjct 4424285 CGACTTCCAGAGTGATCGTCTTTCCCGTCAGGGTTTTGACGAAGATCTGCAT 4424234 Score = 89.7 bits (98), Expect = 3e-13 Identities = 108/146 (74%), Gaps = 2/146 (1%) Strand=Plus/Minus Query 33513 AAAATCGTCA--CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATG 33570 |||||| || ||||| |||| ||| ||||||| ||| ||||| || || || ||| Sbjct 5507306 AAAATCTGCATGCCACCCCTCAGACGCAACACCAGATGAAGAGTTGATTCCTTCTGAATG 5507247 Query 33571 TTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGC 33630 |||||||| | ||| || | | | || |||| || || || || || |||||||||||| Sbjct 5507246 TTGTAATCCGCGAGCGTCCTTCCATCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGC 5507187 Query 33631 TGATCTTGCGGCACACCTTCTTTGTC 33656 || || |||| | ||||| ||||| Sbjct 5507186 TGGTCCGGCGGAATCCCTTCCTTGTC 5507161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328697974855680