Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20maxima_20[genbank_20GCA_5F002006925.1_202017-03-07] 1,504 sequences; 345,757,338 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq1 116 4e-21 seq6 96.9 3e-15 seq2 89.7 5e-13 >seq1 Length=32082701 Score = 116 bits (128), Expect = 4e-21 Identities = 343/518 (66%), Gaps = 18/518 (3%) Strand=Plus/Plus Query 46758 GTGCCATGCGTTCGCAAAAAGGCCCAGTGGGCCATGAAGTGGATCGAGAGCGAGACCGCC 46817 ||||| |||||| |||||||||| | |||||| | || |||||||| || | | Sbjct 31016461 GTGCCGTGCGTTGCCAAAAAGGCCGATTGGGCCCTAAATTGGATCGACGGCTCG---GAG 31016517 Query 46818 ACGCTGGCCGAGCGCATGGTGGCATTCGCGATAGTCGAAGGCGTGtttttttCGGGCAGT 46877 || | || ||| | || | || || || || ||||| | || || ||||||||| Sbjct 31016518 ACATTCGCGGAGAGACTGATAGCGTTTGCTTGCGTGGAAGGGATATTCTTCTCGGGCAGT 31016577 Query 46878 TTTGCCGCCATTTTTTACATTAAAACCAAAGGCATAATGCCGGGCCTGACGTTCAGTAAC 46937 || ||| || |||| | |||| || ||||||||||||| || ||| ||| Sbjct 31016578 TTCTGCGCGATATTTTGGTTGAAAAAGCGCGGGTTAATGCCGGGCCTAACCTTCTCGAAC 31016637 Query 46938 GAGTTGATCTCGCGCGACGAAGGACTACACACGGACTTTGCGTGTCTCTATTACAAGACG 46997 ||| | |||||||| || |||||||| ||| || || ||||| | | |||| | Sbjct 31016638 GAGCTAATCTCGCGAGATGAAGGACTCCACTGCGATTTCGCGTGCTTGTTGTACAGCTTG 31016697 Query 46998 CGCGTGAATGAGAAATTAAACTCGGA-CACGATCCTGAGCATGTTTAGGGAGGCGGTGAG 47056 | ||| | ||||||| | ||| | || | | | || | | |||||||||| Sbjct 31016698 C---TGAGGAACAAATTAAGCGAGGAGCGCG-TGAAGGGGATAGTGAAGGAGGCGGTGGA 31016753 Query 47057 CATCGAAAAGGAGTTTTTTACTGCG--GCGCTGCCCGTCGCCTTGCTGGGCATGAACGCA 47114 || || | |||||| | |||| |||||||| ||| ||| |||| ||||||| Sbjct 31016754 GATAGAGAGGGAGTTCGT--GTGCGACGCGCTGCCGTGCGCATTGGTGGGGATGAACGGG 31016811 Query 47115 CAGTCTATGTGCGAATATATTGAGTTTGTGGCGGATCGTCTGTT-GGTGCAGCTCGGACA 47173 || ||| | | || || ||||||||||| ||| | |||| ||||| |||||| Sbjct 31016812 GCGTTGATGAGTCAGTACATAGAGTTTGTGGCAGATAGGTTGTTGGGTGC-GCTCGG--G 31016868 Query 47174 ACCGAAATATTTTAATGCTCG--TAATCCGTTTGAGTTTATGAACAACATTTCGCTCGAG 47231 || | | || || | ||||||||||| | ||| | |||||||| | Sbjct 31016869 TGCGGGAAGGTGTACGGCGTGACGAATCCGTTTGATTGGATGGAGTTGATTTCGCTGCAA 31016928 Query 47232 GGCAAAACCAATTTTTTCGAGAAACGAGTCGGAGAGTA 47269 || || || ||||| || ||||| ||||||| || || Sbjct 31016929 GGGAAGACGAATTTCTTTGAGAAGAGAGTCGGGGAATA 31016966 >seq6 Length=23636167 Score = 96.9 bits (106), Expect = 3e-15 Identities = 139/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987 ||||||| || || |||||||| ||| || ||| || ||||||||| || || |||| Sbjct 4416549 TTGACTCCTTCTGGATGTTGTAATCGGCCAAGGTGCGGCCATCTTCGAGTTGCTTTCCGG 4416490 Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047 | |||| |||||||| ||||| ||||| || || || || || || || |||| Sbjct 4416489 CAAAGATCAGACGCTGCTGATCCGGAGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTCA 4416430 Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107 | || | || || | ||||||||||| || | |||||| || || || |||| Sbjct 4416429 CGTTGTCGATGGTGTCAGAGCTCTCCACTTCGAGAGTGATCGTTTTGCCGGTTAGGGTTT 4416370 Query 132108 TTATGAAAATCTGCAT 132123 | | ||| |||||||| Sbjct 4416369 TCACGAAGATCTGCAT 4416354 >seq2 Length=53008150 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 |||||||| | | |||| || || || ||||||||||| | || || ||| || Sbjct 27084291 ACCAAATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCTGCAAGTGTGCGTCCATCCTCT 27084350 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 || |||||||||| | |||| || | || || ||||| || || ||||| || || | Sbjct 27084351 AGTTGTTTACCGGCAAAGATGAGCCTTTGCTGGTCTGGTGGGATCCCTTCCTTGTCCTGA 27084410 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 ||||| ||| | | || | || |||| ||| ||||| | || | |||||| Sbjct 27084411 ATTTTGGCTTTGACATTGTCAATGGTGTCGGAGCTCTCAACTTCCAAGGTGATAGTTTTA 27084470 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 |||||||| ||||| | || |||||||| Sbjct 27084471 CCAGTCAGGGTTTTCACAAATATCTGCAT 27084499 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 |||||||| | | ||||||| || || ||||||||||| | ||||| ||||||| Sbjct 27127326 ACCAAATGAAGGGTTGACTCCTTCTGGATGTTGTAGTCAGCAAGAGTACGACCATCTTCG 27127385 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 || ||||| |||| | |||||| | ||||||||| || || ||||| || || || Sbjct 27127386 AGTTGTTTGCCGGCAAAGATTAACCTCTGTTGATCAGGTGGGATGCCCTCCTTGTCCTGG 27127445 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 || || || | | || | || || | || || || | || | || ||| Sbjct 27127446 ATCTTGGCCTTGACATTGTCGATCGTGTCAGAGCTTTCAACCTCCAAAGTTATAGTCTTA 27127505 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 |||||||| ||||| | |||||||||||| Sbjct 27127506 CCAGTCAGGGTTTTCACAAAAATCTGCATG 27127535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476602239709440