Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20maxima_20[genbank_20GCA_5F002006925.1_202017-03-07] 1,504 sequences; 345,757,338 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq1 291 1e-72 seq7 280 2e-69 seq6 95.1 2e-13 >seq1 Length=32082701 Score = 291 bits (322), Expect = 1e-72 Identities = 407/563 (72%), Gaps = 12/563 (2%) Strand=Plus/Plus Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG 1455775 ||||||||||| | ||||| |||| || | |||| || |||| |||| | Sbjct 31016071 GAGCCGCTGCTAACCCCGAACCCAGACCGATTCTGCATGTTTCCAATCCAGTACCCGGAA 31016130 Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCT 1455835 || |||||||||||| | |||| |||| || || |||||||| || |||||||| ||||| Sbjct 31016131 ATCTGGGAAATGTACAAGAAAG-CCGAAGCTTCATTTTGGACGGCGGAGGAGGTTGACCT 31016189 Query 1455836 CGGCGCCG-ACACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGC 1455894 | ||| | ||| ||| |||| || || | | ||||||| || ||||||| || Sbjct 31016190 -GTCGCAGGACATCCGCCAGTGGGAATCCCTAACGGCCGACGAGAAACACTTCATCACGC 31016248 Query 1455895 ACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGC 1455954 |||| |||||||| || ||||||| ||||| ||||| ||| ||||| |||| | | Sbjct 31016249 ACGTGCTCGCCTTCTT-CGCCGCCTCGGATGGAATCGTCCTCGAAAACCTCGCCGCCAGG 31016307 Query 1455955 TTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATC 1456014 || |||||||| ||||| | | ||||| ||| || ||||| ||||| ||||||||| Sbjct 31016308 TTCATGAAAGAAATCCAAGTCTCCGAGGCGCGTGCCTTCTACGGCTTCCAAATCGCCATC 31016367 Query 1456015 GAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTC 1456074 || ||||||||||| |||| ||||||||||| | || || ||| | || || | | | Sbjct 31016368 GAGAACATCCACTCCGAAATGTACTCGCTCCTTCTAGAAACGTACATAAAAAACTCCGAC 31016427 Query 1456075 GAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGAC 1456134 || ||| || | | ||||||||| | || || ||||||| || ||||||||||| Sbjct 31016428 GAAAAGAGCCGCTTATTTCGCGCCTTTGAAACTGTGCCGTGCGTTGCCAAAAAGGCCGAT 31016487 Query 1456135 TGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACAC-TTTGCCGAGCGGCTCGTCGGC 1456193 ||||| | || |||||| || ||| || || || || ||| | || | | Sbjct 31016488 TGGGCCCTAAATTGGATC------GACGGCTCGGAGACATTCGCGGAGAGACTGATAGCG 31016541 Query 1456194 TTTGC-CGCGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAG 1456252 ||||| |||| || || || || |||||||||||||||||||| || |||||| | || Sbjct 31016542 TTTGCTTGCGTGGAAGGGATATTCTTCTCGGGCAGTTTCTGCGCGATATTTTGGTTGAAA 31016601 Query 1456253 AAGCGCGGCCTCATGCCCGGTCT 1456275 |||||||| | ||||| || || Sbjct 31016602 AAGCGCGGGTTAATGCCGGGCCT 31016624 >seq7 Length=22269817 Score = 280 bits (310), Expect = 2e-69 Identities = 407/562 (72%), Gaps = 16/562 (3%) Strand=Plus/Minus Query 1455716 GAGCCGCTGCT-GCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCG 1455774 |||||||| || || | | | ||||| | |||| | ||||||| || | |||| | Sbjct 8165765 GAGCCGCTTCTAGCCCCAAATCCCGATCGATTTTG-CATGTTCCCGATTCAGTACCCACA 8165707 Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 || |||||||||||| | |||| |||| || || ||||||||||| ||||| || || | Sbjct 8165706 AATTTGGGAAATGTACAAGAAAG-CCGAAGCGTCGTTTTGGACCGCTGAGGAAGTTGATC 8165648 Query 1455835 TCGGCGCC-GA-CACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAA 1455892 | ||| || | | | |||||||| | | || | || |||||| || ||| ||| Sbjct 8165647 TTT-CGCAAGATCTCCG-CCACTGGGAGGCCCTAACCGCTGACGAGAAGCACTTCGTCAC 8165590 Query 1455893 GCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCC 1455952 |||||| |||||||| || ||| ||| ||| |||||||| ||||||||| ||||| Sbjct 8165589 GCACGTGCTCGCCTTCTT-CGCAGCCTCCGACGGCATCGTCCTCGAGAACCTCGCCGGAA 8165531 Query 1455953 GCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCA 1456012 | || |||| |||||||| | | ||||| ||| || ||||| ||||| ||||||| Sbjct 8165530 GGTTCATGACGGAGGTCCAGGTCGCCGAGGCGCGTGCCTTCTACGGCTTCCAAATCGCCA 8165471 Query 1456013 TCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGG 1456072 |||| ||||||||||| |||| |||||||| || | || || ||| |||| ||| | | Sbjct 8165470 TCGAGAACATCCACTCCGAAATGTACTCGCTGCTTCTAGAAACTTACATCAAAGACTCCG 8165411 Query 1456073 TCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCG 1456132 ||| ||| ||| ||||||| ||||||||| ||||| || | || || || ||| Sbjct 8165410 ACGAAAAGAACCGTCTCTTTCACGCCATCGAGACGGTTCCCTGCGTCGCAAAGAAAGCCA 8165351 Query 1456133 ACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTT-GCCGAGCGGCTCGTCG 1456191 |||||| | || |||||| || ||| || ||||| || ||| | | ||| Sbjct 8165350 CGTGGGCGTTAAATTGGATC------GACGGCTCGGAGACTTTCGCGGAGAGATTAATCG 8165297 Query 1456192 GCTTTGC-CGCGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCA 1456250 ||||| |||| ||||| || || ||||| || ||||| ||||| || |||||||||| Sbjct 8165296 CGTTTGCTTGCGTGGAGGGGATTTTCTTCTCAGGGAGTTTTTGCGCGATATTTTGGCTCA 8165237 Query 1456251 AGAAGCGCGGCCTCATGCCCGG 1456272 | |||||||| | ||||| || Sbjct 8165236 AAAAGCGCGGGTTAATGCCGGG 8165215 >seq6 Length=23636167 Score = 95.1 bits (104), Expect = 2e-13 Identities = 134/186 (72%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 724958 CTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGG 725017 ||||| |||| ||||| ||||||||| || |||||||||| |||| || || Sbjct 6523937 CTCCAGCAAGGCCATGGGTATCATGAACAGTTTCATCAACGACATCTTCGAGAA-ATTGG 6523995 Query 725018 CACC-GAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGA 725076 | | ||||| ||| || ||| | | ||||||| |||||| || | |||| Sbjct 6523996 CCCAAGAGGCGTCTCGTCTCGCGAGGTACAACAAGAAGCCGACGATCACGTCGAGGGAGA 6524055 Query 725077 TCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGG 725136 |||||||||||||| | || || ||| ||| ||| |||||| ||||||||| || |||| Sbjct 6524056 TCCAGACCGCCGTGAGATTGGTCTTGCCCGGTGAATTGGCCAAGCACGCCGTGTCGGAGG 6524115 Query 725137 GCACCA 725142 | |||| Sbjct 6524116 GGACCA 6524121 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177666136435648