Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20maxima_20[genbank_20GCA_5F002006925.1_202017-03-07] 1,504 sequences; 345,757,338 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1 134 2e-26 seq6 129 8e-25 seq7 122 1e-22 seq3 113 6e-20 >seq1 Length=32082701 Score = 134 bits (148), Expect = 2e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 ||||| ||||| | || | |||||| | |||| | || | |||||| || | ||| ||| Sbjct 28519932 CCTCCTTGATCAACATAACGGGCAGTATCATTAAACACCCGCAGCATTGGCACAATGCCA 28519873 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870 |||||| | |||||||||||| ||||||||||||| |||| ||||| || || || Sbjct 28519872 TTAGATGTCCCATTTGTTCCACGAATATAACTTCCTGTTGCACGAATGTTGTGAACTGAG 28519813 Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 | ||| || ||||| || ||| ||| | |||||| ||||| || |||||||| Sbjct 28519812 ACACCAATACCTCCAGCTGATTTGCTGATAATAGCACACTCCTTCAAAGTATCATATATT 28519753 Query 69931 CCCTCTATGCTATCATCTATCATG 69954 || || || ||||||||| ||||| Sbjct 28519752 CCTTCAATACTATCATCTTTCATG 28519729 Score = 107 bits (118), Expect = 3e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 ||||| |||||||| | ||| |||||||| || || |||||| || ||| | || || | Sbjct 28519567 GTTCCAGCATTAAAAAGTGTGGGAGATGCATGGGTAAACCATCGTTGAGACATCATATGG 28519508 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 ||||||| || || || || || || || ||||| || | || || | ||||||| Sbjct 28519507 TATGTTTTGATGGCAGAATCAATGTCATCCTTGTGAATCCCAACAGCAACCCTCATCAAC 28519448 Query 70111 ATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGA 70170 ||||| || |||| |||||| ||| | | ||||| ||||| || | ||||| Sbjct 28519447 ATATGTTGGGGTCTTTCTACAACTTTTCCTTGGACCTTCAAGAGGTAGGACCTCTCCAGG 28519388 Query 70171 GTTTTAAACCCAAAATA 70187 ||||| || |||||||| Sbjct 28519387 GTTTTGAAGCCAAAATA 28519371 >seq6 Length=23636167 Score = 129 bits (142), Expect = 8e-25 Identities = 113/141 (80%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 69990 AGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATT 70049 |||||| |||||||| | |||||||||||| || ||||||||| ||| || | || || Sbjct 11060852 AGTTCCAGCATTAAAAAGTGTAGGAGATGCATGGGTGAACCATCTTTGGGACATCATATG 11060793 Query 70050 GTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAA 70109 |||||||| |||||| || || ||||| || |||||||| || | || | |||||| Sbjct 11060792 GTATGTTTTAATAGCAGAATCAATATCATCCTTGTGAATTCCAATAGAAACCCTCATCAA 11060733 Query 70110 CATATGCTGAGGTCGTTCTAC 70130 |||||||||||||| |||||| Sbjct 11060732 CATATGCTGAGGTCTTTCTAC 11060712 Score = 118 bits (130), Expect = 1e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 ||||||||||| | || | |||||| | |||| | || | |||||| || | ||| ||| Sbjct 11061181 CCTCCCTGATCCACATAACGGGCAGTATCATTAAACACCCGCAGCATTGGGACAATGCCA 11061122 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870 || ||| | || ||||||||| |||||||||||| |||| ||||| || || || Sbjct 11061121 TTGGATGTCCCGTTTGTTCCACGAATATAACTTCCAGTTGCACGAATGTTGTGAACTGAG 11061062 Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 | ||| || ||||| || ||| ||| | |||||| ||||| || ||||| || Sbjct 11061061 ACACCAATACCTCCAGCTGATTTGCTGATAACAGCACACTCCTTCAAAGTTTCATAGATT 11061002 Query 69931 CCCTCTATGCTATCATCTATCAT 69953 || || || ||||||||| |||| Sbjct 11061001 CCTTCAATACTATCATCTTTCAT 11060979 >seq7 Length=22269817 Score = 122 bits (134), Expect = 1e-22 Identities = 495/773 (64%), Gaps = 14/773 (2%) Strand=Plus/Plus Query 39445 CAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAG 39504 ||||||||| || ||||| |||||||| |||||| ||| | |||||| || | | Sbjct 8164983 CAATCTATCCGCGACAAACTCTATGTACTGACTCATCAATTCTCCATTCATCCCCACCAA 8165042 Query 39505 TTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTAT 39564 || || || || | ||||||| | || || || || ||||| | | || Sbjct 8165043 CGCGCACGGCAGCGCATCGCACACAAACTCTCTCTCTATCTCCACCGCCTCCTTCACTAA 8165102 Query 39565 CGATGTTACTACCTCATCACTCGGT---GGATGCAATAAA-TGTTTAAACATTAAGCAGG 39620 || | ||| ||| || || | | ||||||| ||| ||| | ||| | Sbjct 8165103 CGCCTTCACTCTCTCCTCGCTTAGCTTCGTCCTCAATAAACTGT----ACAACAGGCACG 8165158 Query 39621 CGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAG 39680 |||| || || || || |||||||||| | || || ||||| || ||||| | ||| | Sbjct 8165159 CGAAATCGCAGTGGAGACCCTCATCTCGAGAGATCAACTCGTTTGAGAATGTTAATCCCG 8165218 Query 39681 GCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT-CCAGAAAAGAAGATG 39739 |||||| || |||||||||||||||||||| || |||||| | || || ||||| || Sbjct 8165219 GCATTAACCCGCGCTTTTTGAGCCAAAATATCGC-GCAAAAACTCCCTGAGAAGAAAATC 8165277 Query 39740 CCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAA--CTTGTATCATTATGTATCC 39797 || || || ||||| || | | |||||| || || || | | | |||| Sbjct 8165278 CCCTCCACGCAAGCAAACGCGATTAATCTCTCCGCGAAAGTCTCCGAGC--CGTCGATCC 8165335 Query 39798 ACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGA 39857 | || ||||| |||||||| || || || | || || || || | ||||| Sbjct 8165336 AATTTAACGCCCACGTGGCTTTCTTTGCGACGCAGGGAACCGTCTCGATGGCGTGAAAGA 8165395 Query 39858 GATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTG 39917 || | ||||| || ||||| | || || |||| | ||| |||||||| | Sbjct 8165396 GACGGTTCTTTTCGTCGGAGTCTTTGATGTAAGTTTCTAGAAGCAGCGAGTACATTTCGG 8165455 Query 39918 AATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTA 39977 | |||||||| || || || || || || ||||| || | || || | | || | Sbjct 8165456 AGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCACGCGCCTCGGCGACCTGGA 8165515 Query 39978 CCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAA 40037 |||| | || ||| | || | || || || || || || || || || | Sbjct 8165516 CCTCCGTCATGAACCTTCCGGCGAGGTTCTCGAGGACGATGCCGTCGGAGGCTGCGAAGA 8165575 Query 40038 ATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGA 40097 | || | || || | | || | || || || | || | | ||||| || Sbjct 8165576 AGGCGAGCACGTGCGTGACGAAGTGCTTCTCGTCAGCGGTTAGGGCCTCCCAGTGGCGGA 8165635 Query 40098 TATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACA 40157 ||||| || | ||| ||||| ||||| |||||||||||||| || || || ||||||| Sbjct 8165636 GATCTTGCGAAAGATCAACTTCCTCAGCGGTCCAAAACGACGCTTCGGCTTTCTTGTACA 8165695 Query 40158 TGTTCCATATATCACGATATTGTATTGGAAAAATAACAAATCTATTTGGATTT 40210 | | ||| || | | || || || || || || ||||| || |||||| Sbjct 8165696 TTTCCCAAATTTGTGGGTACTGAATCGGGAACATGCAAAATCGATCGGGATTT 8165748 >seq3 Length=30666748 Score = 113 bits (124), Expect = 6e-20 Identities = 149/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 69766 TATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTT 69825 |||| ||||||| |||| | ||| |||||||| | ||| ||||| || |||||| Sbjct 26155574 TATCGAGCAGTGTCATTAAACACTTGGAGCATCGGGACAATGCCATTGGAAGATCCATTT 26155515 Query 69826 GTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCT 69885 |||||| || ||||| ||| || || |||||| ||| || ||||| |||||||| Sbjct 26155514 GTTCCATGGATGTAACTGCCTGAGGCACGGATATTATGAATGGAGAGACCAATTCCTCCA 26155455 Query 69886 GCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCA 69945 || ||| || | |||||| |||| || |||||||| || || ||||| ||| Sbjct 26155454 GCTGATTTGCTTATGATAGCACACTTCTTCAGGGTATCATATATGCCTTCAATGCTGTCA 26155395 Query 69946 TCTATCATGTTAAGAAGAAAACAGCTA 69972 ||| ||||| | |||||| |||||| Sbjct 26155394 TCTTTCATGCACAAAAGAAAGCAGCTA 26155368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686895886114560