Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20maxima_20[genbank_20GCA_5F002006925.1_202017-03-07] 1,504 sequences; 345,757,338 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq6 120 3e-22 seq8 114 1e-20 seq7 113 4e-20 seq5 107 2e-18 seq2 102 7e-17 >seq6 Length=23636167 Score = 120 bits (132), Expect = 3e-22 Identities = 176/248 (71%), Gaps = 2/248 (1%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 ||||||| || | || | || | ||| | ||| || || ||||| |||||||| ||| Sbjct 5506612 TGCCTCCACGGAGACGAAGCACAAGATGAAGCGTCGATTCCTTTTGGATATTGTAATCGG 5506553 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 || | |||| | |||||||||||||| || ||| | || |||||||| || ||||| | Sbjct 5506552 CCAAGGTGCGGCCATCTTCGAGCTGTTTTCCAGCGAAGATCAGACGCTGCTGGTCCGGAG 5506493 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | || || || || ||||||| || | | | || | ||||| | | || | Sbjct 5506492 GGATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCGA 5506433 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGCTAAAA 27258 |||| ||||| || | ||||| || || |||||||| ||||| ||||| | | ||||| Sbjct 5506432 CTTCGAGAGTAATGGTCTTGCCGGTTAGGGTTTTCACGAAGATCTGCATCGTT--TAAAA 5506375 Query 27259 ATTTATTA 27266 ||| ||| Sbjct 5506374 GTTTCTTA 5506367 Score = 116 bits (128), Expect = 3e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 27044 ATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTG 27103 ||| || || || ||||||||||| ||||| ||| || |||| |||||||||| || Sbjct 4424209 ATGCAAAGTGGATTCTTTTTGAATGTTGTAATCGGCCAAAGTGCGGCCGTCTTCGAGTTG 4424150 Query 27104 TTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTT 27163 || ||||| | ||||||||||| || |||||||| | ||||| || || |||||| Sbjct 4424149 CTTCCCGGCAAAGATGAGACGCTGCTGGTCCGGCGGAATTCCCTCCTTGTCCTGGATCTT 4424090 Query 27164 GTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGT 27223 | || | | | || | ||||| | | || ||||| || || || | ||||| || Sbjct 4424089 GGCCTTGACGTTGTCGATTGTGTCGGAGCTCTCCACTTCGAGGGTGATTGTCTTGCCGGT 4424030 Query 27224 CAGAGTTTTCACAAAGATTTGCAT 27247 || ||||||||||| || ||||| Sbjct 4424029 GAGGGTTTTCACAAATATCTGCAT 4424006 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||| || || | ||||| |||| |||||||| || ||| Sbjct 3889296 GTCGACTCCTTCTGGATGTTGTAATCCGCCAAGGTGCGCCCGTCCTCGAGCTGCTTTCCG 3889237 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | || || ||||| || ||||| || | || || || || ||||||| || Sbjct 3889236 GCGAAGATCAGCCGCTGCTGGTCCGGTGGAATCCCTTCCTTGTCCTGGATCTTGGCCTTG 3889177 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | | || || || ||||| || | ||||| |||| |||| Sbjct 3889176 ACGTTGTCGATCGTGTCGGAGCTCTCCACCTCGAGAGTGATGGTCTTGCCGGTCAAAGTT 3889117 Query 27231 TTCACAAAGATTTGCAT 27247 ||||||||||| ||||| Sbjct 3889116 TTCACAAAGATCTGCAT 3889100 >seq8 Length=21028080 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || ||||| || ||||||||| | | | | | |||| |||||||| || ||| Sbjct 17551074 GTTGACTCCTTTTGGATGTTGTAGTCGGCTAGGGTTCTCCCGTCCTCGAGCTGCTTTCCG 17551015 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||||||||| || ||||| || | ||||| || || ||||||| || Sbjct 17551014 GCGAAGATGAGACGCTGCTGGTCCGGTGGAATCCCCTCCTTGTCCTGGATCTTGGCCTTG 17550955 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | ||||| | | ||| || ||||| ||||| | || ||||| || ||| Sbjct 17550954 ACATTGTCGATGGTGTCCGATGATTCGACCTCTAGGGTTATGGTCTTTCCCGTTAGGGTT 17550895 Query 27231 TTCACAAAGATTTGCATAGCTGC 27253 ||||| ||||| ||||| ||||| Sbjct 17550894 TTCACGAAGATCTGCATGGCTGC 17550872 >seq7 Length=22269817 Score = 113 bits (124), Expect = 4e-20 Identities = 149/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCG-CTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 || || || ||||| || ||||||||| || ||| || |||| |||||||| || || Sbjct 17754901 GTTGACTCCTTTTGGATGTTGTAGTCGGCTAGGGTTCTGC-CGTCCTCGAGCTGCTTTCC 17754959 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 |||| | ||||||||||| || ||||| || | ||||| || || ||||||| || Sbjct 17754960 GGCGAAGATGAGACGCTGCTGGTCCGGTGGAATCCCCTCCTTGTCCTGGATCTTGGCCTT 17755019 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 | | || | ||||| | | ||| || ||||| ||||| | || ||||| || || Sbjct 17755020 GACATTGTCGATGGTGTCCGATGATTCGACCTCTAGGGTTATGGTCTTTCCCGTTAGGGT 17755079 Query 27230 TTTCACAAAGATTTGCATAGCTGC 27253 |||||| ||||| ||||| ||||| Sbjct 17755080 TTTCACGAAGATCTGCATGGCTGC 17755103 >seq5 Length=49531769 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || |||||||||||| || | | ||| ||||||||||||| || ||| Sbjct 45288692 GTCGACTCCTTCTGGATATTGTAGTCGGCCAAGGTTCGCCCGTCTTCGAGCTGCTTGCCG 45288633 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||| ||||| || ||||| || | ||||| || || |||||| || Sbjct 45288632 GCGAAGATGAGGCGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTG 45288573 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | || || || || | ||||| | || ||||| || ||| Sbjct 45288572 ACGTTGTCGATTGTGTCGGAGGACTCCACCTCCAACGTTATGGTCTTACCCGTTAGGGTT 45288513 Query 27231 TTCACAAAGATTTGCAT 27247 ||||| ||||| ||||| Sbjct 45288512 TTCACGAAGATCTGCAT 45288496 >seq2 Length=53008150 Score = 102 bits (112), Expect = 7e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGT-TGCGCTCGTCTTC 27097 ||||| || | || || || || || ||||| ||||| || || |||| | || || Sbjct 27128010 ACCAAGTGGAGGGTTGATTCCTTCTGGATATTATAGTCAG-CAAGTGTGCGACCATCCTC 27128068 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 |||||||||||| || | || || | ||| ||||| || || | || || || || Sbjct 27128069 GAGCTGTTTACCAGCAAAGATAAGCCTCTGCTGATCTGGTGGGATCCCTTCCTTGTCCTG 27128128 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 ||||||| ||| | | || | ||||| | | |||||| || || ||||| | || Sbjct 27128129 GATCTTGGCTTTTACATTATCAATGGTGTCGGAGCTTTCAACCTCAAGGGTTATTGTCTT 27128188 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||| || ||||||||||||||||||||||| Sbjct 27128189 GCCGGTGAGAGTTTTCACAAAGATTTGCAT 27128218 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | ||||| || || ||||| |||||||| | | | || | ||||| Sbjct 27084063 ACCAAGTGAAGGGTAGATTCCTTCTGAATGTTGTAGTCAGCAAGGGTACGGCCATCTTCT 27084122 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| || || || |||| || | ||||||||| || || | ||||| || || | Sbjct 27084123 AGCTGCTTTCCAGCAAAAATCAGTCTCTGTTGATCAGGTGGGATGCCCTCCTTGTCCTGG 27084182 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| || | | || | ||||| | | |||||| || | |||||||| || Sbjct 27084183 ATCTTGGCCTTGACATTGTCGATCGTGTCAGAGCTTTCAACCTCCAAAGTTATAGTCTTA 27084242 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || ||||| ||||||||||| || ||||| Sbjct 27084243 CCAGTCAGGGTTTTCACAAAAATCTGCAT 27084271 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 |||||||| | || || || || || || |||||||| | | || | |||||| Sbjct 27127326 ACCAAATGAAGGGTTGACTCCTTCTGGATGTTGTAGTCAGCAAGAGTACGACCATCTTCG 27127385 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 || ||||| ||||| | || | | ||||||||| || || | ||||| || || | Sbjct 27127386 AGTTGTTTGCCGGCAAAGATTAACCTCTGTTGATCAGGTGGGATGCCCTCCTTGTCCTGG 27127445 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| || | | || | ||||| | | |||||| || | |||||||| || Sbjct 27127446 ATCTTGGCCTTGACATTGTCGATCGTGTCAGAGCTTTCAACCTCCAAAGTTATAGTCTTA 27127505 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || ||||| ||||||||||| || ||||| Sbjct 27127506 CCAGTCAGGGTTTTCACAAAAATCTGCAT 27127534 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| ||||| || || || ||||||| | ||| ||||| || || | |||||| || Sbjct 27087514 TCTTCAAGCTGCTTTCCAGCAAAAATGAGCCTCTGCTGATCTGGTGGGATACCCTCCTTG 27087573 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || || ||| ||||| | || || ||||| | | ||| || || ||||| || Sbjct 27087574 TCTTGAATTTTGGCTTTCACATTGTCAACGGTGTCAGAGCTTTCTACCTCAAGAGTGATT 27087633 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | ||| || ||||| ||||||||||| || |||||| Sbjct 27087634 GTTTTTCCTGTCAGGGTTTTCACAAAAATCTGCATA 27087669 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| ||||| || || || ||||||| | ||| ||||| || || | |||||| || Sbjct 27127152 TCTTCAAGCTGCTTTCCAGCAAAAATGAGCCTCTGCTGATCTGGTGGGATACCCTCCTTG 27127211 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || || || ||||| | | || | ||||| | |||||| || ||||| || Sbjct 27127212 TCTTGAATTTTTGCTTTCACGTTGTCGATGGTGTCAGAACTTTCAACCTCAAGAGTAATT 27127271 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | ||| || || || |||||||||||||| |||||| Sbjct 27127272 GTTTTTCCGGTGAGCGTTTTCACAAAGATCTGCATA 27127307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424926610952448