Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20maxima_20[genbank_20GCA_5F002006925.1_202017-03-07] 1,504 sequences; 345,757,338 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq6 105 8e-18 seq2 104 3e-17 seq1 95.1 2e-14 seq7 93.3 5e-14 seq3 86.0 8e-12 >seq6 Length=23636167 Score = 105 bits (116), Expect = 8e-18 Identities = 170/241 (71%), Gaps = 4/241 (2%) Strand=Plus/Minus Query 111930 AACTGGACAT--CTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAAT 111987 |||| |||| ||| || ||||| || |||||||| || || || || | ||| || | Sbjct 11060876 AACTAAACATGCCTGGGGCCTTGGAGTTCCAGCATTAAAAAGTGTAGGAGATGCATGGGT 11060817 Query 111988 GAACATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTG 112047 |||| | |||||||||| | | |||||| | | |||||||||| || ||| ||| Sbjct 11060816 GAACCATCTTTGGGACATCATATGGTATGTTTTAATAGCAGAATCAATATCATCCTTGTG 11060757 Query 112048 GATGCCGATTGCGACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAG 112107 || || || | |||| ||| ||||| | ||| || |||| | | | || | || Sbjct 11060756 AATTCCAATAGAAACCCTCATCAACATATGCTGAGGTCTTTCTACAACCTTCCCTTGGA- 11060698 Query 112108 CCGTTGA-AGATAGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCC 112166 || || | || ||| | ||||||||||||||| ||||||||| || | ||| | |||| Sbjct 11060697 CCTTTAAGAGGTAGGACCTCTCAAGGGTTTTGAAGCCAAAGTAATCATAGTCAAAATCCC 11060638 Query 112167 G 112167 | Sbjct 11060637 G 11060637 >seq2 Length=53008150 Score = 104 bits (114), Expect = 3e-17 Identities = 252/380 (66%), Gaps = 4/380 (1%) Strand=Plus/Plus Query 11452 ATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGC 11511 ||||||||| || || | | | ||| |||||| || ||| | | ||||| || || Sbjct 8162395 ATCAAAACGTCCAGGCCTCAATAAGGCAGAATCAAGAATGTCCGCCCTGTTAGTTGCAGC 8162454 Query 11512 AATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTAAT 11571 ||| || | || ||||| | | ||||| |||||||| || || | | || |||| Sbjct 8162455 AATCACAATGATACCAGTATTACCCTCAAAACCATCCATTTCTGTCAAAAGCTGGTTAAG 8162514 Query 11572 TGTTTGTTCTCTCTCATCATTTGCTGGCATACCA--CCAGCACTGCGTTGCTTGCCCACC 11629 || || ||||| |||||||| || | | | | |||| | | ||| | || || Sbjct 8162515 GGTCTGCTCTCTTTCATCATTCCCT--CCTCCAATTCCAGTTCCTCTTTGTCTTCCAACG 8162572 Query 11630 GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGA 11689 |||||||| ||||| | || ||||| || || ||| || ||| | | || ||| Sbjct 8162573 GCATCAATTTCATCCACAAATACAATGCAAGGAGCATTCTCTTTGGCCTTCTTGAAAAGA 8162632 Query 11690 TCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCAC 11749 || || || || ||||| ||||||||||||||||| ||||| | | | || Sbjct 8162633 TCTCGGACTCTAGATGCACCGACACCAACAAACATCTCAACAAACTCAGAACCTGATATG 8162692 Query 11750 TGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTA 11809 || ||||| ||| | |||||| || || || ||| || || ||||| || || Sbjct 8162693 GAGAAAAATGGAACACCGGCTTCACCAGCAATTGCCTTGGCAAGAAGAGTCTTCCCAGTT 8162752 Query 11810 CCTGGCTTACCCGCGAGAAG 11829 ||||| ||| ||||||| Sbjct 8162753 CCTGGAGGACCAACGAGAAG 8162772 >seq1 Length=32082701 Score = 95.1 bits (104), Expect = 2e-14 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 111940 CTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG 111999 ||| | ||||||||| |||||||| || || || || | ||| || | ||| | ||| Sbjct 28519580 CTGGGCTCTTGGTGTTCCAGCATTAAAAAGTGTGGGAGATGCATGGGTAAACCATCGTTG 28519521 Query 112000 GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGC 112059 |||||| | | |||||| | | | ||||||||||||| ||| ||| || || | || Sbjct 28519520 AGACATCATATGGTATGTTTTGATGGCAGAATCAATGTCATCCTTGTGAATCCCAACAGC 28519461 Query 112060 GACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGA-- 112117 |||| ||| ||||| | || || |||| | | | || | || | || |||| Sbjct 28519460 AACCCTCATCAACATATGTTGGGGTCTTTCTACAACTTTTCCTTGGA--CCTTCAAGAGG 28519403 Query 112118 TAGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 112167 ||| | |||| |||||||||| ||||| ||| || | ||| | ||||| Sbjct 28519402 TAGGACCTCTCCAGGGTTTTGAAGCCAAAATAATCATAGTCAAAATCCCG 28519353 >seq7 Length=22269817 Score = 93.3 bits (102), Expect = 5e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 |||||||||||||||||| || || | || |||||||| || || ||||| | || Sbjct 8165169 GTGGAGACCCTCATCTCGAGAGATCAACTCGTTTGAGAATGTTAATCCCGGCATTAACCC 8165228 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 ||||| || | |||| | || ||||| || ||| |||||||| || |||||||| || Sbjct 8165229 GCGCTTTTTGAGCCAAAATATCGCGCAAAAACTCCCTGAGAAGAAAATCCCCTCCACGCA 8165288 Query 122790 CGCAAACGC 122798 |||||||| Sbjct 8165289 AGCAAACGC 8165297 >seq3 Length=30666748 Score = 86.0 bits (94), Expect = 8e-12 Identities = 145/208 (70%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 |||||||||||| || || | | |||||||| || || ||||| ||||| ||| || Sbjct 29776319 AAAGCCATCCATTTCAGTCAAAAGCTGATTAATAGTCTGCTCTCTTTCATCGTTTCCT-- 29776262 Query 11599 CATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATA 11656 | | | | || || | | || | ||||| |||||||| |||||||| || |||||| Sbjct 29776261 CCTCCAAGCCCTGCTCCTCTCTGTCTCCCCACAGCATCAATTTCATCAATAAACACAATA 29776202 Query 11657 CATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCA 11716 || ||| || ||| | ||||| | ||| | || || || || |||||| Sbjct 29776201 CACGGTGCCTTCGATTTGGCCTTCTCAAACAAATCCCTCACTCTGGATGCGCCAACACCA 29776142 Query 11717 ACAAACATCTCCACAAAGTTTGCGGCAG 11744 ||||||| ||| ||||| | || ||||| Sbjct 29776141 ACAAACAACTCAACAAACTCTGAGGCAG 29776114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628020192998400